Diff of the two buildlogs: -- --- b1/build.log 2024-01-10 22:34:46.543042043 +0000 +++ b2/build.log 2024-01-10 23:44:38.674622324 +0000 @@ -1,6 +1,7 @@ +W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Tue Feb 11 16:21:52 -12 2025 -I: pbuilder-time-stamp: 1739334112 +I: Current time: Thu Jan 11 12:34:54 +14 2024 +I: pbuilder-time-stamp: 1704926094 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -19,7 +20,7 @@ I: copying [./gromacs_2020.6-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.cVXyDWPY/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.RsceAC0j/trustedkeys.kbx': General error gpgv: Signature made Mon Mar 29 05:23:05 2021 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" @@ -40,51 +41,81 @@ dpkg-source: info: applying mpi-tests-localhost.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/57970/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 10 22:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='f38eb3bab20a488b99815c090a6b58ae' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='57970' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=8498 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WzsD8nY5/pbuilderrc_U25O --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WzsD8nY5/b1 --logfile b1/build.log gromacs_2020.6-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WzsD8nY5/pbuilderrc_R7a1 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WzsD8nY5/b2 --logfile b2/build.log gromacs_2020.6-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash @@ -144,7 +175,7 @@ -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 10 22:35 sh -> /bin/bash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su @@ -170,7 +201,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/57970/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -532,7 +563,7 @@ Get: 276 http://deb.debian.org/debian bullseye/main i386 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 277 http://deb.debian.org/debian bullseye/main i386 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 278 http://deb.debian.org/debian bullseye/main i386 texlive-latex-extra all 2020.20210202-3 [13.7 MB] -Fetched 257 MB in 5s (55.3 MB/s) +Fetched 257 MB in 4s (63.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) @@ -1428,8 +1459,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Feb 12 04:22:55 UTC 2025. -Universal Time is now: Wed Feb 12 04:22:55 UTC 2025. +Local time is now: Wed Jan 10 22:35:58 UTC 2024. +Universal Time is now: Wed Jan 10 22:35:58 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgts-0.7-5:i386 (0.7.6+darcs121130-4+b1) ... @@ -1746,7 +1777,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gromacs-2020.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gromacs_2020.6-2_source.changes +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gromacs-2020.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gromacs_2020.6-2_source.changes dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2020.6-2 dpkg-buildpackage: info: source distribution unstable @@ -1894,12 +1929,12 @@ -- Looking for zlibVersion in /usr/lib/i386-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -2124,12 +2159,12 @@ -- Looking for zlibVersion in /usr/lib/i386-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -2347,12 +2382,12 @@ -- Looking for zlibVersion in /usr/lib/i386-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -2569,12 +2604,12 @@ -- Looking for zlibVersion in /usr/lib/i386-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -2784,12 +2819,12 @@ -- Looking for zlibVersion in /usr/lib/i386-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -3002,12 +3037,12 @@ -- Looking for zlibVersion in /usr/lib/i386-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -3094,7 +3129,7 @@ -- Build files have been written to: /build/reproducible-path/gromacs-2020.6/build/openmpi-dp touch configure-stamp dh_testdir -/usr/bin/make -j16 -C build/basic +/usr/bin/make -j7 -C build/basic make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic//CMakeFiles/progress.marks @@ -3105,183 +3140,183 @@ /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target vmddlopen -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -Scanning dependencies of target linearalgebra Scanning dependencies of target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +Scanning dependencies of target linearalgebra /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -[ 0%] Built target release-version-info -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp Scanning dependencies of target thread_mpi +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -Scanning dependencies of target view_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/3dview.cpp +[ 0%] Built target release-version-info +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend Scanning dependencies of target modularsimulator +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +Scanning dependencies of target vmddlopen +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 0%] Built target vmddlopen -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/buttons.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 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'/build/reproducible-path/gromacs-2020.6/build/basic' +[ 6%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xmb.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 3%] Built target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 3%] Built target scanner -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 5%] Built target view_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 8%] Built target thread_mpi +[ 8%] Built target view_objlib +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 10%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' @@ -4059,25 +4094,25 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/share/template /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/share/template /build/reproducible-path/gromacs-2020.6/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/share/template /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/share/template /build/reproducible-path/gromacs-2020.6/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= Scanning dependencies of target gmx -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build Scanning dependencies of target template make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -std=c++14 -o CMakeFiles/template.dir/template.cpp.o -c /build/reproducible-path/gromacs-2020.6/share/template/template.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp Scanning dependencies of target gmxapi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build @@ -4091,17 +4126,17 @@ cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/session.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/session.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/status.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. 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CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.5.0.0 /usr/lib/i386-linux-gnu/libX11.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so -cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so 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/build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target lmfit_objlib /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -Scanning dependencies of target vmddlopen -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +Scanning dependencies of target lmfit_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target scanner -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Scanning dependencies of target linearalgebra -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +Scanning dependencies of target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -Scanning dependencies of target tng_io_obj +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build Scanning dependencies of target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -Scanning dependencies of target view_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +Scanning dependencies of target tng_io_obj [ 0%] Built target release-version-info -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/3dview.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 0%] Built target vmddlopen cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/buttons.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/alltoall.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/p2p_protocol.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 0%] Built target lmfit_objlib -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +Scanning dependencies of target vmddlopen +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/p2p_protocol.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 0%] Built target vmddlopen +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/p2p_send_recv.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/bcast.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xdlgitem.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xmb.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 0%] Built target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target view_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 3%] Built target scanner -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 6%] Built target thread_mpi +[ 6%] Built target view_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 8%] Built target tng_io_obj +[ 8%] Built target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 10%] Built target modularsimulator +[ 10%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake @@ -5081,14 +5116,14 @@ make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= Scanning dependencies of target gmx -Scanning dependencies of target gmxapi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp +Scanning dependencies of target gmxapi +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/context.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/context.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/exceptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/exceptions.cpp @@ -5101,11 +5136,11 @@ cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/system.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/version.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tpr.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d ../../lib/libgromacs_d.so.5.0.0 /usr/lib/i386-linux-gnu/libX11.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 98%] Built target gmx +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tpr.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgmxapi_d.so.0 -o ../../../lib/libgmxapi_d.so.0.1.0 CMakeFiles/gmxapi.dir/context.cpp.o CMakeFiles/gmxapi.dir/exceptions.cpp.o CMakeFiles/gmxapi.dir/gmxapi.cpp.o CMakeFiles/gmxapi.dir/md.cpp.o CMakeFiles/gmxapi.dir/mdmodule.cpp.o CMakeFiles/gmxapi.dir/mdsignals.cpp.o CMakeFiles/gmxapi.dir/session.cpp.o CMakeFiles/gmxapi.dir/status.cpp.o CMakeFiles/gmxapi.dir/system.cpp.o CMakeFiles/gmxapi.dir/version.cpp.o CMakeFiles/gmxapi.dir/workflow.cpp.o CMakeFiles/gmxapi.dir/tpr.cpp.o ../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libgmxapi_d.so.0.1.0 ../../../lib/libgmxapi_d.so.0 ../../../lib/libgmxapi_d.so @@ -5114,7 +5149,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -j16 -C build/basic tests +/usr/bin/make -j7 -C build/basic tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -5127,87 +5162,87 @@ /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +[ 0%] Built target lmfit_objlib +[ 0%] Built target scanner make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +[ 1%] Built target linearalgebra +[ 2%] Built target tng_io_obj +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +[ 4%] Built target thread_mpi +[ 5%] Built target modularsimulator +[ 5%] Built target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 1%] Built target linearalgebra -[ 1%] Built target scanner -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 2%] Built target tng_io_obj -[ 2%] Built target vmddlopen -[ 4%] Built target thread_mpi -[ 4%] Built target lmfit_objlib -[ 5%] Built target mdrun_objlib -[ 7%] Built target modularsimulator -[ 7%] Built target release-version-info +[ 5%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 7%] Built target mdrun_objlib Scanning dependencies of target gtest make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build @@ -5289,139 +5324,248 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +Scanning dependencies of target utility-mpi-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +Scanning dependencies of target applied_forces-test +Scanning dependencies of target testutils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +Scanning dependencies of target mdrun_test_infrastructure +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +Scanning dependencies of target utility-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -Scanning dependencies of target utility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -Scanning dependencies of target testutils-mpi-test +[ 69%] Built target testutils-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared -Scanning dependencies of target fft-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -Scanning dependencies of target domdec-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +[ 69%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -Scanning dependencies of target mdrunutility-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build +[ 69%] Built target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -Scanning dependencies of target hardware-test +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -Scanning dependencies of target testutils-test +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -Scanning dependencies of target applied_forces-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +[ 69%] Built target domdec-test +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -Scanning dependencies of target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +Scanning dependencies of target fft-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -Scanning dependencies of target mdrun_test_infrastructure +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 69%] Built target fft-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build -Scanning dependencies of target mdspan-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 70%] Built target applied_forces-test +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +Scanning dependencies of target hardware-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -Scanning dependencies of target ewald-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +[ 70%] Built target mdrun_test_infrastructure +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -Scanning dependencies of target utility-test -Scanning dependencies of target mdlib-test +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 71%] Built target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 72%] Built target hardware-test +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdspan-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target testutils-mpi-test +[ 72%] Built target mdrunutility-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp 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CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 72%] Built target ewald-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 72%] Built target mdspan-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 72%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -5430,8 +5574,16 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target utility-mpi-test +[ 72%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= @@ -5440,16 +5592,8 @@ /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target onlinehelp-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -5458,15 +5602,10 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target mdrunutility-test-shared +[ 72%] Built target pbcutil-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -5475,11 +5614,7 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target hardware-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -5488,11 +5623,13 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 70%] Built target fft-test +[ 72%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -5501,26 +5638,31 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target pbcutil-test +[ 72%] Built target taskassignment-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target topology-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target domdec-test +[ 74%] Built target mdlib-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -5529,10 +5671,25 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 74%] Built target pull-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target restraintpotential-test +[ 74%] Built target table-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -5541,19 +5698,12 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target pull-test +[ 75%] Built target topology-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -5562,21 +5712,29 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c 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CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 76%] Built target math-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target taskassignment-test +[ 77%] Built target random-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -5585,48 +5743,47 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target topology-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp Scanning dependencies of target gmxana-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/entropy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 72%] Built target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp Scanning dependencies of target pdb2gmx3-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 77%] Built target awh-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target applied_forces-test +[ 78%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= @@ -5635,14 +5792,11 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target mdrun_test_infrastructure +[ 78%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= @@ -5651,15 +5805,18 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target awh-test +[ 80%] Built target pdb2gmx2-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= @@ -5668,30 +5825,25 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/editconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target table-test +[ 80%] Built target pdb2gmx1-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp Scanning dependencies of target correlations-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -[ 74%] Built target mdspan-test +[ 81%] Built target options-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= @@ -5700,27 +5852,28 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/datatest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target gpu_utils-test +[ 81%] Built target correlations-test /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp Scanning dependencies of target coordinateio-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/builder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target pdb2gmx3-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -5729,29 +5882,28 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target pdb2gmx2-test +[ 82%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target tool-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/dump.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 76%] Built target gmxana-test +[ 82%] Built target compat-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -5760,11 +5912,19 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 76%] Built target pdb2gmx1-test +[ 84%] Built target utility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= @@ -5773,14 +5933,18 @@ /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o +/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 84%] Built target analysisdata-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target energyanalysis-test +[ 84%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake --color= @@ -5789,48 +5953,39 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/densityfittingmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target correlations-test +[ 85%] Built target simd-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp -cd 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CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/domain_decomposition.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp -cd 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CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target tool-test +[ 87%] Built target gmxpreprocess-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= @@ -5839,18 +5994,12 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/periodicactions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target analysisdata-test-shared +[ 87%] Built target mdrun-modules-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake --color= @@ -5859,19 +6008,45 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/exactcontinuation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target ewald-test +[ 88%] Built target fileio-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target mdrun-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build -[ 78%] Built target random-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/dispersion_correction.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 88%] Built target mdrun-mpi-coordination-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 89%] Built target coordinateio-test +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-output-test @@ -5879,18 +6054,14 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build make[4]: Entering directory 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && 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/build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target mdrun-modules-test +[ 90%] Built target selection-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= @@ -5899,41 +6070,30 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target compat-test +[ 91%] Built target mdrun-mpi-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tpitest.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target mdrun-mpi-coordination-test +[ 91%] Built target mdrun-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= @@ -5942,37 +6102,30 @@ /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp -cd 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CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 80%] Built target gmxpreprocess-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 +[ 91%] Built target mdrun-tpi-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target gmxapi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 80%] Built target mdrun-tpi-test +[ 92%] Built target mdrun-io-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= @@ -5981,75 +6134,50 @@ /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 81%] Built target fileio-test +[ 94%] Built target mdrun-output-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp Scanning dependencies of target workflow-details-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -Scanning dependencies of target commandline-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 82%] Built target workflow-details-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= +Scanning dependencies of target commandline-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target mdrunutility-mpi-test +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 83%] Built target workflow-details-test +[ 95%] Built target workflow-details-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -6058,181 +6186,88 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target mdrun-mpi-test -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -Scanning dependencies of target onlinehelp-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 85%] Built target mdrun-io-test +[ 95%] Built target gmxapi-mpi-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 85%] Built target mdrun-test +[ 95%] Built target mdrun-non-integrator-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= -[ 87%] Built target options-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 88%] Built target coordinateio-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 88%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp +[ 95%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" 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-I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd 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CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd 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CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 89%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +[ 96%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 90%] Built target mdlib-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 91%] Built target gmxapi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 91%] Built target onlinehelp-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 97%] Built target gmxapi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 91%] Built target mdrun-non-integrator-test +[ 97%] Built target analysisdata-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 91%] Built target analysisdata-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 92%] Built target simd-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/select.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 94%] Built target commandline-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 95%] Built target selection-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 96%] Built target math-test +[ 98%] Built target commandline-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 97%] Built target trajectoryanalysis-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[100%] Built target utility-test +[100%] Built target trajectoryanalysis-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -6280,14 +6315,14 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (5 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -6299,33 +6334,33 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys -1: [ OK ] ReferenceDataTest.HandlesAnys (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile @@ -6333,15 +6368,15 @@ 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace -1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds @@ -6349,16 +6384,16 @@ 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (6 ms total) +1: [----------] 34 tests from ReferenceDataTest (10 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -6375,7 +6410,7 @@ 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) -1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total) +1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance @@ -6390,19 +6425,19 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (0 ms) +1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (0 ms) +1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (11 ms total) +1: [==========] 59 tests from 5 test cases ran. (18 ms total) 1: [ PASSED ] 59 tests. - 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.03 sec + 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -6416,9 +6451,9 @@ 2: [----------] 1 test from MpiSelfTest (2 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (2 ms total) +2: [==========] 1 test from 1 test case ran. (3 ms total) 2: [ PASSED ] 1 test. - 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.01 sec + 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.02 sec test 3 Start 3: UtilityUnitTests @@ -6430,27 +6465,27 @@ 3: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.Move 3: [ OK ] AllocatorTest/0.Move (0 ms) 3: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/0 (0 ms total) +3: [----------] 5 tests from AllocatorTest/0 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.Move 3: [ OK ] AllocatorTest/1.Move (0 ms) 3: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/1 (1 ms total) +3: [----------] 5 tests from AllocatorTest/1 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -6489,7 +6524,7 @@ 3: [ OK ] AllocatorTest/4.Move (0 ms) 3: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/4 (0 ms total) +3: [----------] 5 tests from AllocatorTest/4 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -6874,7 +6909,7 @@ 3: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/16 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks @@ -7002,31 +7037,31 @@ 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) 3: [ RUN ] KeyValueTreeSerializerTest.SimpleObject -3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) +3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (1 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) +3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (2 ms total) +3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +3: [----------] 4 tests from KeyValueTreeSerializerTest (3 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms 3: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive -3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (1 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString -3: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (1 ms total) +3: [----------] 6 tests from TreeValueTransformTest (2 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError -3: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) +3: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) 3: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 3: 3: [----------] 7 tests from LoggerTest @@ -7035,7 +7070,7 @@ 3: [ RUN ] LoggerTest.LogsToStream 3: [ OK ] LoggerTest.LogsToStream (0 ms) 3: [ RUN ] LoggerTest.LogsToFile -3: [ OK ] LoggerTest.LogsToFile (0 ms) +3: [ OK ] LoggerTest.LogsToFile (1 ms) 3: [ RUN ] LoggerTest.LevelFilteringWorks 3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams @@ -7043,8 +7078,8 @@ 3: [ RUN ] LoggerTest.LogsToMultipleFiles 3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile -3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (1 ms total) +3: [ OK ] LoggerTest.LogsToStreamAndFile (1 ms) +3: [----------] 7 tests from LoggerTest (3 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -7070,8 +7105,8 @@ 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (0 ms) -3: [----------] 2 tests from PathTest (0 ms total) +3: [ OK ] PathTest.SearchOperationsWork (1 ms) +3: [----------] 2 tests from PathTest (1 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -7094,7 +7129,7 @@ 3: [ RUN ] StringUtilityTest.SplitDelimitedString 3: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -3: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) +3: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitive 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength @@ -7148,18 +7183,18 @@ 3: [ RUN ] TextLineWrapperTest.WrapsCorrectly 3: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks -3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) +3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (1 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndent 3: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines -3: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) +3: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (1 ms) 3: [ RUN ] TextLineWrapperTest.HandlesHangingIndent -3: [ OK ] TextLineWrapperTest.HandlesHangingIndent (1 ms) +3: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace -3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (1 ms total) +3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (1 ms) +3: [----------] 10 tests from TextLineWrapperTest (3 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -7167,14 +7202,14 @@ 3: [ RUN ] TextWriterTest.WritesLinesInParts 3: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 3: [ RUN ] TextWriterTest.WritesWrappedLines -3: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) +3: [ OK ] TextWriterTest.WritesWrappedLines (1 ms) 3: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper -3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (1 ms) +3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 3: [ RUN ] TextWriterTest.TracksNewlines 3: [ OK ] TextWriterTest.TracksNewlines (0 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -3: [----------] 6 tests from TextWriterTest (1 ms total) +3: [----------] 6 tests from TextWriterTest (2 ms total) 3: 3: [----------] 1 test from TypeTraitsTest 3: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -7260,7 +7295,7 @@ 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 @@ -7289,9 +7324,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (12 ms total) +3: [==========] 347 tests from 56 test cases ran. (22 ms total) 3: [ PASSED ] 347 tests. - 3/54 Test #3: UtilityUnitTests .................... Passed 0.03 sec + 3/54 Test #3: UtilityUnitTests .................... Passed 0.05 sec test 4 Start 4: UtilityMpiUnitTests @@ -7301,15 +7336,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (2 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (4 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier 4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (2 ms total) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (4 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (2 ms total) +4: [==========] 2 tests from 1 test case ran. (4 ms total) 4: [ PASSED ] 2 tests. - 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.01 sec + 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec test 5 Start 5: MdlibUnitTest @@ -7364,15 +7399,15 @@ 5: 5: [----------] 9 tests from UpdateGroups 5: [ RUN ] UpdateGroups.ethaneUA -5: [ OK ] UpdateGroups.ethaneUA (1 ms) +5: [ OK ] UpdateGroups.ethaneUA (0 ms) 5: [ RUN ] UpdateGroups.methane 5: [ OK ] UpdateGroups.methane (0 ms) 5: [ RUN ] UpdateGroups.ethane -5: [ OK ] UpdateGroups.ethane (1 ms) +5: [ OK ] UpdateGroups.ethane (0 ms) 5: [ RUN ] UpdateGroups.butaneUA 5: [ OK ] UpdateGroups.butaneUA (0 ms) 5: [ RUN ] UpdateGroups.waterThreeSite -5: [ OK ] UpdateGroups.waterThreeSite (0 ms) +5: [ OK ] UpdateGroups.waterThreeSite (1 ms) 5: [ RUN ] UpdateGroups.waterFourSite 5: [ OK ] UpdateGroups.waterFourSite (0 ms) 5: [ RUN ] UpdateGroups.fourAtomsWithSettle @@ -7381,18 +7416,18 @@ 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (2 ms total) +5: [----------] 9 tests from UpdateGroups (1 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) 5: [----------] 1 test from UpdateGroupsCog (1 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/3 @@ -7440,7 +7475,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/0 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/1 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/1 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/1 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/2 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/3 @@ -7452,7 +7487,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/9 @@ -7498,7 +7533,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/13 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/13 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/14 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/14 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/14 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/15 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/15 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/16 @@ -7526,7 +7561,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/7 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 @@ -7557,7 +7592,7 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (3 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (2 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 @@ -7570,29 +7605,29 @@ 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 -5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) +5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (6 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (10 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (27 ms total) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (3 ms) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (38 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -7678,27 +7713,27 @@ 5: 5: [----------] 16 tests from WithParameters/LeapFrogTest 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/0 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/0 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/1 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (4 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 @@ -7706,16 +7741,16 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (3 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (2 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (21 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (3 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (30 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 @@ -7723,27 +7758,27 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (2 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (2 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (9 ms total) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (2 ms) +5: [----------] 13 tests from WithParameters/SettleTest (13 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (66 ms total) +5: [==========] 187 tests from 13 test cases ran. (88 ms total) 5: [ PASSED ] 187 tests. - 5/54 Test #5: MdlibUnitTest ....................... Passed 0.08 sec + 5/54 Test #5: MdlibUnitTest ....................... Passed 0.11 sec test 6 Start 6: AppliedForcesUnitTest @@ -7753,20 +7788,20 @@ 6: [----------] Global test environment set-up. 6: [----------] 2 tests from DensityFittingTest 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows -6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) +6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (0 ms) +6: [ OK ] DensityFittingTest.SingleAtom (1 ms) 6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters 6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive -6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (1 ms) +6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive -6: [ OK ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive (0 ms) +6: [ OK ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive (1 ms) 6: [ RUN ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup 6: [ OK ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup (0 ms) 6: [ RUN ] DensityFittingOptionsTest.InternalsToKvt @@ -7796,17 +7831,17 @@ 6: 6: [----------] 3 tests from ElectricFieldTest 6: [ RUN ] ElectricFieldTest.Static -6: [ OK ] ElectricFieldTest.Static (1 ms) +6: [ OK ] ElectricFieldTest.Static (2 ms) 6: [ RUN ] ElectricFieldTest.Oscillating 6: [ OK ] ElectricFieldTest.Oscillating (0 ms) 6: [ RUN ] ElectricFieldTest.Pulsed 6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (1 ms total) +6: [----------] 3 tests from ElectricFieldTest (2 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (3 ms total) +6: [==========] 20 tests from 4 test cases ran. (4 ms total) 6: [ PASSED ] 20 tests. - 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.01 sec + 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.02 sec test 7 Start 7: CommandLineUnitTests @@ -7818,27 +7853,27 @@ 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) +7: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues -7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (2 ms total) +7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (1 ms) +7: [----------] 7 tests from CommandLineHelpWriterTest (4 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -7848,12 +7883,12 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -7863,7 +7898,7 @@ 7: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 7: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 7: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument -7: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) +7: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) 7: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 7: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 7: [ RUN ] CommandLineParserTest.HandlesString @@ -7882,7 +7917,7 @@ 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -7: [----------] 13 tests from CommandLineParserTest (0 ms total) +7: [----------] 13 tests from CommandLineParserTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -7897,7 +7932,7 @@ 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -7: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) +7: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 7: 7: [----------] 3 tests from OutputNamesTest 7: [ RUN ] OutputNamesTest.CanBeSuffixed @@ -7926,7 +7961,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 7: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs -7: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) +7: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (1 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 7: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults @@ -7948,15 +7983,15 @@ 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (3 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (8 ms total) +7: [==========] 59 tests from 7 test cases ran. (12 ms total) 7: [ PASSED ] 59 tests. - 7/54 Test #7: CommandLineUnitTests ................ Passed 0.02 sec + 7/54 Test #7: CommandLineUnitTests ................ Passed 0.03 sec test 8 Start 8: DomDecTests @@ -7983,13 +8018,13 @@ 8: 8: [----------] 2 tests from LocalAtomSetManager 8: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet -8: [ OK ] LocalAtomSetManager.CanAddEmptyLocalAtomSet (1 ms) +8: [ OK ] LocalAtomSetManager.CanAddEmptyLocalAtomSet (0 ms) 8: [ RUN ] LocalAtomSetManager.CanAddandReadLocalAtomSetIndices 8: [ OK ] LocalAtomSetManager.CanAddandReadLocalAtomSetIndices (0 ms) -8: [----------] 2 tests from LocalAtomSetManager (1 ms total) +8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (1 ms total) +8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. 8/54 Test #8: DomDecTests ......................... Passed 0.01 sec test 9 @@ -8003,83 +8038,83 @@ 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (1 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (7 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (13 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (8 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (14 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (51 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (4 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (91 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 @@ -8087,7 +8122,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 @@ -8095,181 +8130,181 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (2 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 @@ -8277,55 +8312,55 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 @@ -8333,161 +8368,161 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (63 ms total) +9: [----------] 144 tests from SaneInput/PmeGatherTest (110 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (15 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (25 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (3 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (6 ms total) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (13 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (8 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (14 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (15 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (26 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (14 ms total) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (23 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -8497,56 +8532,56 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (19 ms total) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (28 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (7 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (6 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (49 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (79 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (282 ms total) +9: [==========] 257 tests from 10 test cases ran. (451 ms total) 9: [ PASSED ] 257 tests. - 9/54 Test #9: EwaldUnitTests ...................... Passed 0.31 sec + 9/54 Test #9: EwaldUnitTests ...................... Passed 0.50 sec test 10 Start 10: FFTUnitTests @@ -8556,20 +8591,20 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (12 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (19 ms) -10: [----------] 2 tests from ManyFFTTest (27 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (30 ms) +10: [----------] 2 tests from ManyFFTTest (44 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (5 ms) -10: [----------] 1 test from FFTTest (5 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (7 ms) +10: [----------] 1 test from FFTTest (8 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (3 ms) +10: [----------] 1 test from FFFTest3D (4 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 @@ -8577,27 +8612,27 @@ 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (3 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (4 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (6 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (11 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (20 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (15 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (37 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (26 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (64 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (71 ms total) +10: [==========] 14 tests from 4 test cases ran. (120 ms total) 10: [ PASSED ] 14 tests. -10/54 Test #10: FFTUnitTests ........................ Passed 0.08 sec +10/54 Test #10: FFTUnitTests ........................ Passed 0.14 sec test 11 Start 11: GpuUtilsUnitTests @@ -8717,7 +8752,7 @@ 11: [ OK ] HostAllocatorTestNoMem/3.Swap (0 ms) 11: [ RUN ] HostAllocatorTestNoMem/3.Comparison 11: [ OK ] HostAllocatorTestNoMem/3.Comparison (0 ms) -11: [----------] 5 tests from HostAllocatorTestNoMem/3 (0 ms total) +11: [----------] 5 tests from HostAllocatorTestNoMem/3 (1 ms total) 11: 11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0, where TypeParam = int 11: [ RUN ] HostAllocatorTestNoMemCopyable/0.CopyAssignment @@ -8749,12 +8784,12 @@ 11: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 11: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) +11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 11: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.Move 11: [ OK ] AllocatorTest/0.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/0 (1 ms total) +11: [----------] 4 tests from AllocatorTest/0 (0 ms total) 11: 11: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -8792,7 +8827,7 @@ 11: [----------] Global test environment tear-down 11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.01 sec +11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.02 sec test 12 Start 12: HardwareUnitTests @@ -8802,17 +8837,17 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (17 ms) +12: [ OK ] HardwareTopologyTest.Execute (18 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute 12: [ OK ] HardwareTopologyTest.HwlocExecute (19 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (17 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (19 ms) -12: [----------] 4 tests from HardwareTopologyTest (72 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (14 ms) +12: [----------] 4 tests from HardwareTopologyTest (68 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (72 ms total) +12: [==========] 4 tests from 1 test case ran. (68 ms total) 12: [ PASSED ] 4 tests. 12/54 Test #12: HardwareUnitTests ................... Passed 0.08 sec test 13 @@ -8863,14 +8898,14 @@ 13: [ RUN ] TranslateAndScaleTest.translationAndScalingNonTrivial 13: [ OK ] TranslateAndScaleTest.translationAndScalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingIdentity -13: [ OK ] TranslateAndScaleTest.scalingIdentity (0 ms) +13: [ OK ] TranslateAndScaleTest.scalingIdentity (1 ms) 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial 13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseNoZero 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect @@ -8888,16 +8923,16 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect -13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) +13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (1 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (15 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (42 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (14 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (43 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (16 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (25 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (46 ms total) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (1 ms) +13: [----------] 12 tests from DensitySimilarityTest (112 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -8935,7 +8970,7 @@ 13: 13: [----------] 21 tests from FunctionTest 13: [ RUN ] FunctionTest.StaticLog2 -13: [ OK ] FunctionTest.StaticLog2 (0 ms) +13: [ OK ] FunctionTest.StaticLog2 (1 ms) 13: [ RUN ] FunctionTest.Log2I32Bit 13: [ OK ] FunctionTest.Log2I32Bit (0 ms) 13: [ RUN ] FunctionTest.Log2I64Bit @@ -8943,15 +8978,15 @@ 13: [ RUN ] FunctionTest.GreatestCommonDivisor 13: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 13: [ RUN ] FunctionTest.InvsqrtFloat -13: [ OK ] FunctionTest.InvsqrtFloat (1 ms) +13: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 13: [ RUN ] FunctionTest.InvsqrtDouble 13: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvsqrtInteger -13: [ OK ] FunctionTest.InvsqrtInteger (0 ms) +13: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 13: [ RUN ] FunctionTest.InvcbrtFloat 13: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 13: [ RUN ] FunctionTest.InvcbrtDouble -13: [ OK ] FunctionTest.InvcbrtDouble (0 ms) +13: [ OK ] FunctionTest.InvcbrtDouble (1 ms) 13: [ RUN ] FunctionTest.InvcbrtInteger 13: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 13: [ RUN ] FunctionTest.SixthrootFloat @@ -8959,35 +8994,35 @@ 13: [ RUN ] FunctionTest.SixthrootDouble 13: [ OK ] FunctionTest.SixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.SixthrootInteger -13: [ OK ] FunctionTest.SixthrootInteger (1 ms) +13: [ OK ] FunctionTest.SixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootFloat 13: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootDouble 13: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootInteger -13: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) +13: [ OK ] FunctionTest.InvsixthrootInteger (1 ms) 13: [ RUN ] FunctionTest.Powers 13: [ OK ] FunctionTest.Powers (0 ms) 13: [ RUN ] FunctionTest.ErfInvFloat -13: [ OK ] FunctionTest.ErfInvFloat (1 ms) +13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble -13: [ OK ] FunctionTest.ErfInvDouble (0 ms) +13: [ OK ] FunctionTest.ErfInvDouble (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (4 ms total) +13: [----------] 21 tests from FunctionTest (7 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne -13: [ OK ] GaussianOn1DLattice.sumsCloseToOne (0 ms) +13: [ OK ] GaussianOn1DLattice.sumsCloseToOne (1 ms) 13: [ RUN ] GaussianOn1DLattice.isCorrect 13: [ OK ] GaussianOn1DLattice.isCorrect (0 ms) 13: [ RUN ] GaussianOn1DLattice.complementaryAmplitudesSumToZero 13: [ OK ] GaussianOn1DLattice.complementaryAmplitudesSumToZero (0 ms) 13: [ RUN ] GaussianOn1DLattice.doesNotOverflowForLargeRange 13: [ OK ] GaussianOn1DLattice.doesNotOverflowForLargeRange (0 ms) -13: [----------] 4 tests from GaussianOn1DLattice (0 ms total) +13: [----------] 4 tests from GaussianOn1DLattice (1 ms total) 13: 13: [----------] 9 tests from GaussTransformTest 13: [ RUN ] GaussTransformTest.isZeroUponConstruction @@ -9318,9 +9353,9 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (52 ms total) +13: [==========] 204 tests from 29 test cases ran. (123 ms total) 13: [ PASSED ] 204 tests. -13/54 Test #13: MathUnitTests ....................... Passed 0.06 sec +13/54 Test #13: MathUnitTests ....................... Passed 0.14 sec test 14 Start 14: MdrunUtilityUnitTests @@ -9336,9 +9371,9 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads @@ -9352,7 +9387,7 @@ 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) @@ -9361,16 +9396,16 @@ 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -14: [----------] 17 tests from ThreadAffinityTest (3 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +14: [----------] 17 tests from ThreadAffinityTest (4 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (3 ms total) +14: [==========] 17 tests from 1 test case ran. (4 ms total) 14: [ PASSED ] 17 tests. -14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.01 sec +14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.02 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -9380,40 +9415,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (2 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (7 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (5 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (15 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (6 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (2 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (2 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (10 ms total) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (11 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (15 ms total) +15: [==========] 13 tests from 2 test cases ran. (26 ms total) 15: [ PASSED ] 13 tests. -15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.02 sec +15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.04 sec test 16 Start 16: MDSpanTests @@ -9507,7 +9542,7 @@ 16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (1 ms total) +16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. 16/54 Test #16: MDSpanTests ......................... Passed 0.01 sec test 17 @@ -9521,7 +9556,7 @@ 17: [ RUN ] TextTableFormatterTest.HandlesBasicCase 17: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles -17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) +17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (1 ms) 17: [ RUN ] TextTableFormatterTest.HandlesIndentation 17: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines @@ -9529,8 +9564,8 @@ 17: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns -17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (2 ms total) +17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (1 ms) +17: [----------] 6 tests from TextTableFormatterTest (4 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -9543,14 +9578,14 @@ 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) +17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 17: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) +17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) 17: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) 17: 17: [----------] 11 tests from HelpWriterContextTest 17: [ RUN ] HelpWriterContextTest.FormatsParagraphs -17: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace @@ -9566,17 +9601,17 @@ 17: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable -17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles 17: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms) -17: [----------] 11 tests from HelpWriterContextTest (3 ms total) +17: [----------] 11 tests from HelpWriterContextTest (6 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (6 ms total) +17: [==========] 22 tests from 4 test cases ran. (11 ms total) 17: [ PASSED ] 22 tests. -17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.01 sec +17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.03 sec test 18 Start 18: OptionsUnitTests @@ -9647,12 +9682,12 @@ 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage -18: [ OK ] OptionsTest.FailsOnNonsafeStorage (1 ms) -18: [----------] 1 test from OptionsTest (1 ms total) +18: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) +18: [----------] 1 test from OptionsTest (0 ms total) 18: 18: [----------] 9 tests from OptionsAssignerTest 18: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter @@ -9721,12 +9756,12 @@ 18: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 18: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 18: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue -18: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) +18: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (1 ms) 18: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 18: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 18: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 18: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) -18: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) +18: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) 18: 18: [----------] 9 tests from OptionsAssignerStringTest 18: [ RUN ] OptionsAssignerStringTest.StoresSingleValue @@ -9821,14 +9856,14 @@ 18: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 18: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue -18: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (1 ms) -18: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) +18: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) +18: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 18: 18: [----------] 6 tests from TreeValueSupportAdjustTest 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (1 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues @@ -9837,31 +9872,31 @@ 18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (3 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption -18: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsIntegerOption -18: [ OK ] TreeValueSupportTest.SupportsIntegerOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsInt64Option -18: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsStringOption 18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption -18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption -18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption -18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (2 ms total) +18: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms) +18: [----------] 8 tests from TreeValueSupportTest (4 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (6 ms total) +18: [==========] 110 tests from 18 test cases ran. (10 ms total) 18: [ PASSED ] 110 tests. -18/54 Test #18: OptionsUnitTests .................... Passed 0.02 sec +18/54 Test #18: OptionsUnitTests .................... Passed 0.03 sec test 19 Start 19: PbcutilUnitTest @@ -9884,7 +9919,7 @@ 19: [----------] Global test environment tear-down 19: [==========] 3 tests from 2 test cases ran. (1 ms total) 19: [ PASSED ] 3 tests. -19/54 Test #19: PbcutilUnitTest ..................... Passed 0.01 sec +19/54 Test #19: PbcutilUnitTest ..................... Passed 0.02 sec test 20 Start 20: RandomUnitTests @@ -9894,14 +9929,14 @@ 20: [----------] Global test environment set-up. 20: [----------] 4 tests from ExponentialDistributionTest 20: [ RUN ] ExponentialDistributionTest.Output -20: [ OK ] ExponentialDistributionTest.Output (0 ms) +20: [ OK ] ExponentialDistributionTest.Output (1 ms) 20: [ RUN ] ExponentialDistributionTest.Logical 20: [ OK ] ExponentialDistributionTest.Logical (0 ms) 20: [ RUN ] ExponentialDistributionTest.Reset 20: [ OK ] ExponentialDistributionTest.Reset (0 ms) 20: [ RUN ] ExponentialDistributionTest.AltParam 20: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from ExponentialDistributionTest (0 ms total) +20: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output @@ -9932,7 +9967,7 @@ 20: 20: [----------] 6 tests from TabulatedNormalDistributionTest 20: [ RUN ] TabulatedNormalDistributionTest.Output14 -20: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) +20: [ OK ] TabulatedNormalDistributionTest.Output14 (1 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Output16 20: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 @@ -9943,12 +9978,12 @@ 20: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.AltParam 20: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -20: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) +20: [----------] 6 tests from TabulatedNormalDistributionTest (2 ms total) 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -9974,32 +10009,32 @@ 20: [ OK ] UniformIntDistributionTest.Reset (0 ms) 20: [ RUN ] UniformIntDistributionTest.AltParam 20: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from UniformIntDistributionTest (0 ms total) +20: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 20: 20: [----------] 5 tests from UniformRealDistributionTest 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical 20: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Output -20: [ OK ] UniformRealDistributionTest.Output (1 ms) +20: [ OK ] UniformRealDistributionTest.Output (0 ms) 20: [ RUN ] UniformRealDistributionTest.Logical 20: [ OK ] UniformRealDistributionTest.Logical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Reset 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (1 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (1 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 @@ -10008,12 +10043,12 @@ 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (3 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (6 ms total) +20: [==========] 44 tests from 10 test cases ran. (11 ms total) 20: [ PASSED ] 44 tests. -20/54 Test #20: RandomUnitTests ..................... Passed 0.02 sec +20/54 Test #20: RandomUnitTests ..................... Passed 0.04 sec test 21 Start 21: RestraintTests @@ -10027,7 +10062,7 @@ 21: [----------] 1 test from RestraintManager (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 1 test from 1 test case ran. (1 ms total) +21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. 21/54 Test #21: RestraintTests ...................... Passed 0.01 sec test 22 @@ -10039,54 +10074,54 @@ 22: [----------] Global test environment set-up. 22: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (0 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) 22: [ RUN ] SplineTableTest/0.Sinc 22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (9 ms) +22: [ OK ] SplineTableTest/0.LJ12 (15 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (3 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (17 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (28 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (20 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (35 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (4 ms) +22: [ OK ] SplineTableTest/0.Simd (7 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (16 ms) -22: [----------] 10 tests from SplineTableTest/0 (70 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (28 ms) +22: [----------] 10 tests from SplineTableTest/0 (122 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (0 ms) +22: [ OK ] SplineTableTest/1.Sinc (1 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (1 ms) +22: [ OK ] SplineTableTest/1.LJ12 (2 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (3 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (2 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (3 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (2 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (5 ms) 22: [ RUN ] SplineTableTest/1.Simd 22: [ OK ] SplineTableTest/1.Simd (1 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (2 ms) -22: [----------] 10 tests from SplineTableTest/1 (14 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (4 ms) +22: [----------] 10 tests from SplineTableTest/1 (23 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (85 ms total) +22: [==========] 20 tests from 2 test cases ran. (145 ms total) 22: [ PASSED ] 20 tests. -22/54 Test #22: TableUnitTests ...................... Passed 0.09 sec +22/54 Test #22: TableUnitTests ...................... Passed 0.16 sec test 23 Start 23: TaskAssignmentUnitTests @@ -10135,7 +10170,7 @@ 24: 24: [----------] 6 tests from SymtabTest 24: [ RUN ] SymtabTest.EmptyOnOpen -24: [ OK ] SymtabTest.EmptyOnOpen (0 ms) +24: [ OK ] SymtabTest.EmptyOnOpen (1 ms) 24: [ RUN ] SymtabTest.AddSingleEntry 24: [ OK ] SymtabTest.AddSingleEntry (0 ms) 24: [ RUN ] SymtabTest.AddTwoDistinctEntries @@ -10143,13 +10178,13 @@ 24: [ RUN ] SymtabTest.TryToAddDuplicates 24: [ OK ] SymtabTest.TryToAddDuplicates (0 ms) 24: [ RUN ] SymtabTest.AddLargeNumberOfEntries -24: [ OK ] SymtabTest.AddLargeNumberOfEntries (1 ms) +24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable -24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (1 ms total) +24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (1 ms) +24: [----------] 6 tests from SymtabTest (2 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (1 ms total) +24: [==========] 11 tests from 3 test cases ran. (2 ms total) 24: [ PASSED ] 11 tests. 24/54 Test #24: TopologyTest ........................ Passed 0.01 sec test 25 @@ -10173,7 +10208,7 @@ 25: [----------] 5 tests from PullTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 5 tests from 1 test case ran. (0 ms total) +25: [==========] 5 tests from 1 test case ran. (1 ms total) 25: [ PASSED ] 5 tests. 25/54 Test #25: PullTest ............................ Passed 0.01 sec test 26 @@ -10190,39 +10225,39 @@ 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (1 ms) -26: [----------] 1 test from gridTest (1 ms total) +26: [ OK ] gridTest.neighborhood (2 ms) +26: [----------] 1 test from gridTest (2 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +26: [----------] 8 tests from WithParameters/BiasTest (8 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) 26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (7 ms total) +26: [==========] 12 tests from 4 test cases ran. (12 ms total) 26: [ PASSED ] 12 tests. -26/54 Test #26: AwhTest ............................. Passed 0.02 sec +26/54 Test #26: AwhTest ............................. Passed 0.03 sec test 27 Start 27: SimdUnitTests @@ -10347,7 +10382,7 @@ 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 27: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 -27: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) +27: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (1 ms) 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 27: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 @@ -10376,7 +10411,7 @@ 27: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 27: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) -27: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) +27: [----------] 16 tests from SimdFloatingpointUtilTest (1 ms total) 27: 27: [----------] 3 tests from SimdVectorOperationsTest 27: [ RUN ] SimdVectorOperationsTest.iprod @@ -10393,114 +10428,114 @@ 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt -27: [ OK ] SimdMathTest.invsqrt (0 ms) +27: [ OK ] SimdMathTest.invsqrt (1 ms) 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair 27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (0 ms) +27: [ OK ] SimdMathTest.sqrt (1 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe 27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (3 ms) +27: [ OK ] SimdMathTest.inv (2 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt 27: [ OK ] SimdMathTest.cbrt (0 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (1 ms) +27: [ OK ] SimdMathTest.invcbrt (2 ms) 27: [ RUN ] SimdMathTest.log2 27: [ OK ] SimdMathTest.log2 (1 ms) 27: [ RUN ] SimdMathTest.log 27: [ OK ] SimdMathTest.log (0 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (7 ms) +27: [ OK ] SimdMathTest.exp2 (2 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe -27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) +27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (6 ms) +27: [ OK ] SimdMathTest.exp (2 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (1 ms) +27: [ OK ] SimdMathTest.expUnsafe (0 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (0 ms) +27: [ OK ] SimdMathTest.erf (2 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (1 ms) +27: [ OK ] SimdMathTest.erfc (2 ms) 27: [ RUN ] SimdMathTest.sin 27: [ OK ] SimdMathTest.sin (1 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (1 ms) +27: [ OK ] SimdMathTest.cos (2 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (1 ms) +27: [ OK ] SimdMathTest.tan (2 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (1 ms) +27: [ OK ] SimdMathTest.asin (3 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (1 ms) +27: [ OK ] SimdMathTest.acos (2 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (2 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection 27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (3 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy 27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy 27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (6 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (6 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.powSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erfSingleAccuracy -27: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy 27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy -27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -27: [----------] 56 tests from SimdMathTest (58 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) +27: [----------] 56 tests from SimdMathTest (65 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -10529,10 +10564,10 @@ 27: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 27: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 27: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks -27: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (1 ms) +27: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 27: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 27: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) -27: [----------] 3 tests from ArrayRefTest/2 (1 ms total) +27: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 27: 27: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 27: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks @@ -10677,7 +10712,7 @@ 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose 27: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -27: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) +27: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 27: 27: [----------] 1 test from Simd4VectorOperationsTest 27: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -10873,9 +10908,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (59 ms total) +27: [==========] 288 tests from 22 test cases ran. (67 ms total) 27: [ PASSED ] 288 tests. -27/54 Test #27: SimdUnitTests ....................... Passed 0.07 sec +27/54 Test #27: SimdUnitTests ....................... Passed 0.09 sec test 28 Start 28: CompatibilityHelpersTests @@ -10991,7 +11026,7 @@ 28: sizeof( optional ): 16 (12) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (0 ms total) +28: [----------] 45 tests from OptionalTest (1 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -11060,7 +11095,7 @@ 28: [ RUN ] OptionalIntValueTest.CanObtainMovedFromValueForRValuesViaValueOrMethod 28: [ OK ] OptionalIntValueTest.CanObtainMovedFromValueForRValuesViaValueOrMethod (0 ms) 28: [ RUN ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForLValues -28: [ OK ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForLValues (0 ms) +28: [ OK ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForLValues (1 ms) 28: [ RUN ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForRValues 28: [ OK ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForRValues (0 ms) 28: [ RUN ] OptionalIntValueTest.ThrowsBadOptionalAccessWithNonEmptyWhatMethod @@ -11073,7 +11108,7 @@ 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapDisengagnedWithEngaged (0 ms) 28: [ RUN ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged (0 ms) -28: [----------] 20 tests from OptionalIntValueTest (0 ms total) +28: [----------] 20 tests from OptionalIntValueTest (1 ms total) 28: 28: [----------] 1 test from NotNullConstruction 28: [ RUN ] NotNullConstruction.Works @@ -11092,8 +11127,8 @@ 28: 28: [----------] 1 test from MakeNotNull 28: [ RUN ] MakeNotNull.Works -28: [ OK ] MakeNotNull.Works (1 ms) -28: [----------] 1 test from MakeNotNull (1 ms total) +28: [ OK ] MakeNotNull.Works (0 ms) +28: [----------] 1 test from MakeNotNull (0 ms total) 28: 28: [----------] 1 test from NotNull 28: [ RUN ] NotNull.WorksInContainers @@ -11261,7 +11296,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (0 ms total) +28: [----------] 80 tests from StringViewTest (1 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -11277,9 +11312,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (1 ms total) +28: [==========] 170 tests from 12 test cases ran. (3 ms total) 28: [ PASSED ] 170 tests. -28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.01 sec +28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.02 sec test 29 Start 29: GmxAnaTest @@ -11289,16 +11324,16 @@ 29: [----------] Global test environment set-up. 29: [----------] 5 tests from Entropy 29: [ RUN ] Entropy.Schlitter_300_NoLinear -29: [ OK ] Entropy.Schlitter_300_NoLinear (0 ms) +29: [ OK ] Entropy.Schlitter_300_NoLinear (1 ms) 29: [ RUN ] Entropy.Schlitter_300_Linear 29: [ OK ] Entropy.Schlitter_300_Linear (0 ms) 29: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear -29: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (1 ms) +29: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (0 ms) 29: [ RUN ] Entropy.QuasiHarmonic_200_NoLinear -29: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (0 ms) +29: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (1 ms) 29: [ RUN ] Entropy.QuasiHarmonic_200_Linear 29: [ OK ] Entropy.QuasiHarmonic_200_Linear (0 ms) -29: [----------] 5 tests from Entropy (1 ms total) +29: [----------] 5 tests from Entropy (2 ms total) 29: 29: [----------] 10 tests from MindistTest 29: [ RUN ] MindistTest.mindistWorksWithSingleAtoms @@ -11336,7 +11371,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistDoesNotPickUpContacts (1 ms) +29: [ OK ] MindistTest.mindistDoesNotPickUpContacts (2 ms) 29: [ RUN ] MindistTest.mindistPicksUpContacts 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11348,7 +11383,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistPicksUpContacts (0 ms) +29: [ OK ] MindistTest.mindistPicksUpContacts (1 ms) 29: [ RUN ] MindistTest.ngWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11361,7 +11396,7 @@ 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.ngWorks (1 ms) +29: [ OK ] MindistTest.ngWorks (2 ms) 29: [ RUN ] MindistTest.groupWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11409,7 +11444,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.resPerTimeWorks (0 ms) +29: [ OK ] MindistTest.resPerTimeWorks (1 ms) 29: [ RUN ] MindistTest.matrixWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11422,7 +11457,7 @@ 29: Selected 5: 'atoms123' 29: Special case: making distance matrix between all atoms in group atoms123 29: [ OK ] MindistTest.matrixWorks (1 ms) -29: [----------] 10 tests from MindistTest (9 ms total) +29: [----------] 10 tests from MindistTest (13 ms total) 29: 29: [----------] 3 tests from MsdTest 29: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -11463,8 +11498,8 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.oneDimensionalDiffusion (0 ms) -29: [----------] 3 tests from MsdTest (3 ms total) +29: [ OK ] MsdTest.oneDimensionalDiffusion (1 ms) +29: [----------] 3 tests from MsdTest (4 ms total) 29: 29: [----------] 3 tests from MsdMolTest 29: [ RUN ] MsdMolTest.diffMolMassWeighted @@ -11473,7 +11508,7 @@ 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -347374082 +29: Setting the LD random seed to -605029891 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11510,14 +11545,14 @@ 29: Fitting from 0.012 to 0.092 ps 29: 29: D[ water] 6.6830 (+/- 0.1079) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolMassWeighted (331 ms) +29: [ OK ] MsdMolTest.diffMolMassWeighted (538 ms) 29: [ RUN ] MsdMolTest.diffMolNonMassWeighted 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolNonMassWeighted.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -411044101 +29: Setting the LD random seed to 1543503167 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11554,14 +11589,14 @@ 29: Fitting from 0.012 to 0.092 ps 29: 29: D[ water] 6.6830 (+/- 0.1079) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolNonMassWeighted (321 ms) +29: [ OK ] MsdMolTest.diffMolNonMassWeighted (521 ms) 29: [ RUN ] MsdMolTest.diffMolSelected 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolSelected.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -605227011 +29: Setting the LD random seed to 2136986597 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11598,8 +11633,8 @@ 29: Fitting from 0.012 to 0.092 ps 29: 29: D[ mol] 7.7624 (+/- 2.9088) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolSelected (316 ms) -29: [----------] 3 tests from MsdMolTest (968 ms total) +29: [ OK ] MsdMolTest.diffMolSelected (514 ms) +29: [----------] 3 tests from MsdMolTest (1573 ms total) 29: 29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -11631,7 +11666,7 @@ 29: Select a group: Reading frames from gro file '', 6 atoms. 29: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (1 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (2 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -11646,13 +11681,13 @@ 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) -29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) +29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (11 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 27 tests from 5 test cases ran. (991 ms total) +29: [==========] 27 tests from 5 test cases ran. (1603 ms total) 29: [ PASSED ] 27 tests. -29/54 Test #29: GmxAnaTest .......................... Passed 1.00 sec +29/54 Test #29: GmxAnaTest .......................... Passed 1.62 sec test 30 Start 30: GmxPreprocessTests @@ -11681,7 +11716,7 @@ 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 30: [ OK ] GenconfTest.nbox_rot_Works (1 ms) -30: [----------] 4 tests from GenconfTest (4 ms total) +30: [----------] 4 tests from GenconfTest (6 ms total) 30: 30: [----------] 2 tests from GenionTest 30: [ RUN ] GenionTest.HighConcentrationIonPlacement @@ -11696,7 +11731,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -1143736353 +30: Setting the LD random seed to -18956293 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -11738,7 +11773,7 @@ 30: Will try to add 4 NA ions and 4 CL ions. 30: Select a continuous group of solvent molecules 30: Selected 1: 'Water' -30: [ OK ] GenionTest.HighConcentrationIonPlacement (331 ms) +30: [ OK ] GenionTest.HighConcentrationIonPlacement (546 ms) 30: [ RUN ] GenionTest.NoIonPlacement 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GenionTest_NoIonPlacement_input.mdp]: @@ -11751,7 +11786,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -274729105 +30: Setting the LD random seed to -36716553 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -11774,8 +11809,8 @@ 30: There are: 1 Other residues 30: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 30: This run will generate roughly 0 Mb of data -30: [ OK ] GenionTest.NoIonPlacement (328 ms) -30: [----------] 2 tests from GenionTest (659 ms total) +30: [ OK ] GenionTest.NoIonPlacement (536 ms) +30: [----------] 2 tests from GenionTest (1082 ms total) 30: 30: [----------] 1 test from GenRestrTest 30: [ RUN ] GenRestrTest.SimpleRestraintsGenerated @@ -11793,8 +11828,8 @@ 30: Group 9 ( SideChain-H) has 35 elements 30: Select a group: Select group to position restrain 30: Selected 3: 'C-alpha' -30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (2 ms) -30: [----------] 1 test from GenRestrTest (2 ms total) +30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (3 ms) +30: [----------] 1 test from GenRestrTest (3 ms total) 30: 30: [----------] 9 tests from PreprocessingAtomTypesTest 30: [ RUN ] PreprocessingAtomTypesTest.EmptyOnCreate @@ -11869,7 +11904,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 30: 30: Output configuration contains 8 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (2 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 30: Initialising inter-atomic distances... 30: @@ -11931,7 +11966,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 30: 30: Output configuration contains 10 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (1 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (2 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -11964,7 +11999,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 30: 30: Output configuration contains 632 atoms in 212 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (8 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (11 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 30: Initialising inter-atomic distances... 30: @@ -11997,8 +12032,8 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 30: 30: Output configuration contains 6 atoms in 3 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (1 ms) -30: [----------] 5 tests from InsertMoleculesTest (15 ms total) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (3 ms) +30: [----------] 5 tests from InsertMoleculesTest (20 ms total) 30: 30: [----------] 14 tests from GetIrTest 30: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -12011,18 +12046,18 @@ 30: 30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (3 ms) 30: [ RUN ] GetIrTest.RejectsNonCommentLineWithNoEquals -30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (4 ms) +30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (7 ms) 30: [ RUN ] GetIrTest.AcceptsKeyWithoutValue 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsKeyWithoutValue_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (2 ms) +30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (4 ms) 30: [ RUN ] GetIrTest.RejectsValueWithoutKey -30: [ OK ] GetIrTest.RejectsValueWithoutKey (4 ms) +30: [ OK ] GetIrTest.RejectsValueWithoutKey (7 ms) 30: [ RUN ] GetIrTest.RejectsEmptyKeyAndEmptyValue -30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (3 ms) +30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (8 ms) 30: [ RUN ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsDefineParametersWithValuesIncludingAssignment_input.mdp]: @@ -12036,47 +12071,47 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsEmptyLines (2 ms) +30: [ OK ] GetIrTest.AcceptsEmptyLines (3 ms) 30: [ RUN ] GetIrTest.AcceptsElectricField 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricField_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricField (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricField (3 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldPulsed 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldPulsed_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (3 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (4 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldOscillating 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldOscillating_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (3 ms) 30: [ RUN ] GetIrTest.RejectsDuplicateOldAndNewKeys -30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (1 ms) +30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (4 ms) 30: [ RUN ] GetIrTest.AcceptsImplicitSolventNo 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsImplicitSolventNo_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (3 ms) +30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (4 ms) 30: [ RUN ] GetIrTest.RejectsImplicitSolventYes -30: [ OK ] GetIrTest.RejectsImplicitSolventYes (3 ms) +30: [ OK ] GetIrTest.RejectsImplicitSolventYes (5 ms) 30: [ RUN ] GetIrTest.AcceptsMimic 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsMimic_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsMimic (3 ms) -30: [----------] 14 tests from GetIrTest (38 ms total) +30: [ OK ] GetIrTest.AcceptsMimic (4 ms) +30: [----------] 14 tests from GetIrTest (63 ms total) 30: 30: [----------] 5 tests from SolvateTest 30: [ RUN ] SolvateTest.cs_box_Works @@ -12116,7 +12151,7 @@ 30: Density : 1056.36 (g/l) 30: Number of solvent molecules: 47 30: -30: [ OK ] SolvateTest.cs_box_Works (8 ms) +30: [ OK ] SolvateTest.cs_box_Works (12 ms) 30: [ RUN ] SolvateTest.cs_cp_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12156,7 +12191,7 @@ 30: Density : 974.777 (g/l) 30: Number of solvent molecules: 886 30: -30: [ OK ] SolvateTest.cs_cp_Works (40 ms) +30: [ OK ] SolvateTest.cs_cp_Works (67 ms) 30: [ RUN ] SolvateTest.cs_cp_p_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12198,7 +12233,7 @@ 30: 30: Processing topology 30: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_spc-and-methanol.top) -30: [ OK ] SolvateTest.cs_cp_p_Works (42 ms) +30: [ OK ] SolvateTest.cs_cp_p_Works (69 ms) 30: [ RUN ] SolvateTest.shell_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12239,7 +12274,7 @@ 30: Density : 279.3 (g/l) 30: Number of solvent molecules: 252 30: -30: [ OK ] SolvateTest.shell_Works (22 ms) +30: [ OK ] SolvateTest.shell_Works (36 ms) 30: [ RUN ] SolvateTest.update_Topology_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12283,8 +12318,8 @@ 30: Processing topology 30: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -30: [ OK ] SolvateTest.update_Topology_Works (168 ms) -30: [----------] 5 tests from SolvateTest (280 ms total) +30: [ OK ] SolvateTest.update_Topology_Works (368 ms) +30: [----------] 5 tests from SolvateTest (552 ms total) 30: 30: [----------] 1 test from TopDirTests 30: [ RUN ] TopDirTests.NamesArrayHasCorrectSize @@ -12297,55 +12332,55 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/0 (6 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/0 (10 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/1 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/1 (4 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/1 (7 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/2 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/2 (5 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/2 (8 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 (3 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 (4 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/5 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/5 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/5 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 (3 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 (5 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/7 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/7 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/7 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/8 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/8 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/8 (4 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 30: 30: Select a group for output: @@ -12355,7 +12390,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 (5 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 (7 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/1 30: 30: Select a group for output: @@ -12365,7 +12400,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/1 (4 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/1 (7 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/2 30: 30: Select a group for output: @@ -12375,7 +12410,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/2 (4 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/2 (6 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/3 30: 30: Select a group for output: @@ -12385,7 +12420,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/3 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/3 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/4 30: 30: Select a group for output: @@ -12395,7 +12430,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/4 (1 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/4 (2 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/5 30: 30: Select a group for output: @@ -12415,7 +12450,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/6 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/6 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/7 30: 30: Select a group for output: @@ -12425,7 +12460,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/7 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/7 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 30: 30: Select a group for output: @@ -12435,13 +12470,13 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 (1 ms) -30: [----------] 18 tests from SinglePeptideFragments/EditconfTest (52 ms total) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 (2 ms) +30: [----------] 18 tests from SinglePeptideFragments/EditconfTest (82 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 69 tests from 10 test cases ran. (1050 ms total) +30: [==========] 69 tests from 10 test cases ran. (1809 ms total) 30: [ PASSED ] 69 tests. -30/54 Test #30: GmxPreprocessTests .................. Passed 1.06 sec +30/54 Test #30: GmxPreprocessTests .................. Passed 1.83 sec test 31 Start 31: Pdb2gmx1Test @@ -12508,7 +12543,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (57 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (104 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12568,7 +12603,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (58 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (114 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12626,7 +12661,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (53 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (98 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12684,7 +12719,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (49 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (89 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12746,7 +12781,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (56 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (103 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12809,7 +12844,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (62 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (114 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12870,7 +12905,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (58 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (106 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12931,7 +12966,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (96 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12990,7 +13025,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (96 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13050,7 +13085,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (59 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (109 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13108,7 +13143,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (53 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (97 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13166,7 +13201,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (48 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13228,7 +13263,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (56 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (102 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13291,7 +13326,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (61 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (113 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13352,7 +13387,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (58 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (107 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13413,7 +13448,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (95 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13472,7 +13507,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (53 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (112 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13532,7 +13567,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (59 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (109 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13590,7 +13625,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (54 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (98 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13648,7 +13683,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (50 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13710,7 +13745,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (56 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (102 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13773,7 +13808,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (62 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (114 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13834,7 +13869,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (58 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (106 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13895,13 +13930,13 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (52 ms) -31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (1332 ms total) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (96 ms) +31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (2456 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 24 tests from 1 test case ran. (1332 ms total) +31: [==========] 24 tests from 1 test case ran. (2456 ms total) 31: [ PASSED ] 24 tests. -31/54 Test #31: Pdb2gmx1Test ........................ Passed 1.34 sec +31/54 Test #31: Pdb2gmx1Test ........................ Passed 2.47 sec test 32 Start 32: Pdb2gmx2Test @@ -13983,7 +14018,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (37 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (61 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14058,7 +14093,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (38 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (66 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14131,7 +14166,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (34 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14204,7 +14239,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (30 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (53 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14281,7 +14316,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (35 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (58 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14359,7 +14394,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (39 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (69 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14435,7 +14470,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (35 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (59 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14511,7 +14546,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (32 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (54 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14585,7 +14620,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (34 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (56 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14660,7 +14695,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (38 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (66 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14733,7 +14768,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (33 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14806,7 +14841,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (31 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (53 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14883,7 +14918,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (33 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14961,7 +14996,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (40 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (69 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15037,7 +15072,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (34 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (59 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15113,8 +15148,8 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (32 ms) -32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (555 ms total) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (54 ms) +32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (949 ms total) 32: 32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15194,7 +15229,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (38 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (63 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15273,7 +15308,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (41 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (72 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15350,7 +15385,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (37 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (61 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15427,7 +15462,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (33 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (57 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15508,7 +15543,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (38 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (62 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15590,7 +15625,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (44 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (75 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15670,7 +15705,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (38 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (65 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15750,7 +15785,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (35 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (60 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15828,7 +15863,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (36 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (60 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15907,7 +15942,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (42 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (72 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15984,7 +16019,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (36 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (62 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16061,7 +16096,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (34 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (57 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16142,7 +16177,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (37 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (64 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16224,7 +16259,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (42 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (74 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16304,7 +16339,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (37 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (64 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16384,13 +16419,13 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (40 ms) -32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (608 ms total) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (60 ms) +32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (1029 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 32 tests from 2 test cases ran. (1163 ms total) +32: [==========] 32 tests from 2 test cases ran. (1978 ms total) 32: [ PASSED ] 32 tests. -32/54 Test #32: Pdb2gmx2Test ........................ Passed 1.17 sec +32/54 Test #32: Pdb2gmx2Test ........................ Passed 1.99 sec test 33 Start 33: Pdb2gmx3Test @@ -16466,7 +16501,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (108 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (90 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16535,7 +16570,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (67 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (95 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16602,7 +16637,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (77 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (85 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16669,7 +16704,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (65 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (75 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16740,7 +16775,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (52 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (90 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16812,7 +16847,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (57 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (101 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16882,7 +16917,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (54 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (93 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16952,8 +16987,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (49 ms) -33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (529 ms total) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (82 ms) +33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (712 ms total) 33: 33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -17030,7 +17065,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (52 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (91 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17106,7 +17141,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (56 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (97 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17180,7 +17215,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (51 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (88 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17254,7 +17289,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (45 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (78 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17332,7 +17367,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (53 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (94 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17411,7 +17446,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (58 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (104 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17488,7 +17523,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (54 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (96 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17565,8 +17600,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (48 ms) -33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (417 ms total) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (85 ms) +33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (733 ms total) 33: 33: [----------] 8 tests from ChainSep/Pdb2gmxTest 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -17654,7 +17689,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (49 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (89 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17789,7 +17824,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (36 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (62 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17875,7 +17910,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (49 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (88 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18010,7 +18045,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (36 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (57 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18100,7 +18135,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (50 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (86 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18261,7 +18296,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (37 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (57 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18343,7 +18378,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (49 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (84 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18451,8 +18486,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (37 ms) -33: [----------] 8 tests from ChainSep/Pdb2gmxTest (343 ms total) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (63 ms) +33: [----------] 8 tests from ChainSep/Pdb2gmxTest (587 ms total) 33: 33: [----------] 4 tests from ChainChanges/Pdb2gmxTest 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -18553,7 +18588,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (25 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (39 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18652,7 +18687,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (24 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (40 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18751,7 +18786,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (23 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (41 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18850,13 +18885,13 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (22 ms) -33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (94 ms total) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (40 ms) +33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (160 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 28 tests from 4 test cases ran. (1383 ms total) +33: [==========] 28 tests from 4 test cases ran. (2193 ms total) 33: [ PASSED ] 28 tests. -33/54 Test #33: Pdb2gmx3Test ........................ Passed 1.39 sec +33/54 Test #33: Pdb2gmx3Test ........................ Passed 2.21 sec test 34 Start 34: CorrelationsTest @@ -18866,26 +18901,26 @@ 34: [----------] Global test environment set-up. 34: [----------] 10 tests from AutocorrTest 34: [ RUN ] AutocorrTest.EacNormal -34: [ OK ] AutocorrTest.EacNormal (40 ms) +34: [ OK ] AutocorrTest.EacNormal (47 ms) 34: [ RUN ] AutocorrTest.EacNoNormalize -34: [ OK ] AutocorrTest.EacNoNormalize (24 ms) +34: [ OK ] AutocorrTest.EacNoNormalize (19 ms) 34: [ RUN ] AutocorrTest.EacCos -34: [ OK ] AutocorrTest.EacCos (44 ms) +34: [ OK ] AutocorrTest.EacCos (37 ms) 34: [ RUN ] AutocorrTest.EacVector -34: [ OK ] AutocorrTest.EacVector (66 ms) +34: [ OK ] AutocorrTest.EacVector (51 ms) 34: [ RUN ] AutocorrTest.EacRcross -34: [ OK ] AutocorrTest.EacRcross (3 ms) +34: [ OK ] AutocorrTest.EacRcross (2 ms) 34: [ RUN ] AutocorrTest.EacP0 -34: [ OK ] AutocorrTest.EacP0 (61 ms) +34: [ OK ] AutocorrTest.EacP0 (74 ms) 34: [ RUN ] AutocorrTest.EacP1 -34: [ OK ] AutocorrTest.EacP1 (73 ms) +34: [ OK ] AutocorrTest.EacP1 (72 ms) 34: [ RUN ] AutocorrTest.EacP2 -34: [ OK ] AutocorrTest.EacP2 (133 ms) +34: [ OK ] AutocorrTest.EacP2 (100 ms) 34: [ RUN ] AutocorrTest.EacP3 -34: [ OK ] AutocorrTest.EacP3 (4 ms) +34: [ OK ] AutocorrTest.EacP3 (6 ms) 34: [ RUN ] AutocorrTest.EacP4 -34: [ OK ] AutocorrTest.EacP4 (67 ms) -34: [----------] 10 tests from AutocorrTest (516 ms total) +34: [ OK ] AutocorrTest.EacP4 (57 ms) +34: [----------] 10 tests from AutocorrTest (466 ms total) 34: 34: [----------] 1 test from ManyAutocorrelationTest 34: [ RUN ] ManyAutocorrelationTest.Empty @@ -18894,31 +18929,31 @@ 34: 34: [----------] 10 tests from ExpfitTest 34: [ RUN ] ExpfitTest.EffnEXP1 -34: [ OK ] ExpfitTest.EffnEXP1 (1 ms) +34: [ OK ] ExpfitTest.EffnEXP1 (3 ms) 34: [ RUN ] ExpfitTest.EffnEXP2 -34: [ OK ] ExpfitTest.EffnEXP2 (2 ms) +34: [ OK ] ExpfitTest.EffnEXP2 (4 ms) 34: [ RUN ] ExpfitTest.EffnEXPEXP -34: [ OK ] ExpfitTest.EffnEXPEXP (3 ms) +34: [ OK ] ExpfitTest.EffnEXPEXP (6 ms) 34: [ RUN ] ExpfitTest.EffnEXP5 -34: [ OK ] ExpfitTest.EffnEXP5 (9 ms) +34: [ OK ] ExpfitTest.EffnEXP5 (16 ms) 34: [ RUN ] ExpfitTest.EffnEXP7 -34: [ OK ] ExpfitTest.EffnEXP7 (9 ms) +34: [ OK ] ExpfitTest.EffnEXP7 (13 ms) 34: [ RUN ] ExpfitTest.EffnEXP9 -34: [ OK ] ExpfitTest.EffnEXP9 (36 ms) +34: [ OK ] ExpfitTest.EffnEXP9 (62 ms) 34: [ RUN ] ExpfitTest.EffnERF -34: [ OK ] ExpfitTest.EffnERF (4 ms) +34: [ OK ] ExpfitTest.EffnERF (7 ms) 34: [ RUN ] ExpfitTest.EffnERREST -34: [ OK ] ExpfitTest.EffnERREST (1 ms) +34: [ OK ] ExpfitTest.EffnERREST (3 ms) 34: [ RUN ] ExpfitTest.EffnVAC -34: [ OK ] ExpfitTest.EffnVAC (13 ms) +34: [ OK ] ExpfitTest.EffnVAC (21 ms) 34: [ RUN ] ExpfitTest.EffnPRES -34: [ OK ] ExpfitTest.EffnPRES (25 ms) -34: [----------] 10 tests from ExpfitTest (103 ms total) +34: [ OK ] ExpfitTest.EffnPRES (51 ms) +34: [----------] 10 tests from ExpfitTest (186 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 21 tests from 3 test cases ran. (625 ms total) +34: [==========] 21 tests from 3 test cases ran. (661 ms total) 34: [ PASSED ] 21 tests. -34/54 Test #34: CorrelationsTest .................... Passed 0.64 sec +34/54 Test #34: CorrelationsTest .................... Passed 0.68 sec test 35 Start 35: AnalysisDataUnitTests @@ -18949,29 +18984,29 @@ 35: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/0 (2 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/0 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/1 (3 ms total) +35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/1 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly @@ -18979,37 +19014,37 @@ 35: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/2 (3 ms total) +35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/2 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/3 (2 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/3 (5 ms total) 35: 35: [----------] 4 tests from AnalysisArrayDataTest 35: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly @@ -19026,23 +19061,23 @@ 35: [ RUN ] AverageModuleTest.BasicTest 35: [ OK ] AverageModuleTest.BasicTest (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipointData -35: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) +35: [ OK ] AverageModuleTest.HandlesMultipointData (2 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipleDataSets -35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [ RUN ] AverageModuleTest.HandlesDataSetAveraging -35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (0 ms) +35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeXAxis 35: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -35: [----------] 6 tests from AverageModuleTest (5 ms total) +35: [----------] 6 tests from AverageModuleTest (7 ms total) 35: 35: [----------] 2 tests from FrameAverageModuleTest 35: [ RUN ] FrameAverageModuleTest.BasicTest -35: [ OK ] FrameAverageModuleTest.BasicTest (0 ms) +35: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 35: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets 35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 2 tests from FrameAverageModuleTest (1 ms total) +35: [----------] 2 tests from FrameAverageModuleTest (3 ms total) 35: 35: [----------] 7 tests from AnalysisHistogramSettingsTest 35: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins @@ -19059,57 +19094,57 @@ 35: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms) 35: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange 35: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms) -35: [----------] 7 tests from AnalysisHistogramSettingsTest (1 ms total) +35: [----------] 7 tests from AnalysisHistogramSettingsTest (0 ms total) 35: 35: [----------] 2 tests from SimpleHistogramModuleTest 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (0 ms) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (0 ms) -35: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) +35: [----------] 2 tests from SimpleHistogramModuleTest (3 ms total) 35: 35: [----------] 3 tests from WeightedHistogramModuleTest 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly -35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (0 ms) +35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) +35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 35: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets -35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from WeightedHistogramModuleTest (3 ms total) +35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) +35: [----------] 3 tests from WeightedHistogramModuleTest (5 ms total) 35: 35: [----------] 3 tests from BinAverageModuleTest 35: [ RUN ] BinAverageModuleTest.ComputesCorrectly -35: [ OK ] BinAverageModuleTest.ComputesCorrectly (0 ms) +35: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 35: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from BinAverageModuleTest (2 ms total) +35: [----------] 3 tests from BinAverageModuleTest (3 ms total) 35: 35: [----------] 4 tests from AbstractAverageHistogramTest 35: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) 35: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth -35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -35: [----------] 4 tests from AbstractAverageHistogramTest (4 ms total) +35: [----------] 4 tests from AbstractAverageHistogramTest (6 ms total) 35: 35: [----------] 3 tests from LifetimeModuleTest 35: [ RUN ] LifetimeModuleTest.BasicTest -35: [ OK ] LifetimeModuleTest.BasicTest (0 ms) +35: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 35: [ RUN ] LifetimeModuleTest.CumulativeTest 35: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 35: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets -35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from LifetimeModuleTest (2 ms total) +35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (2 ms) +35: [----------] 3 tests from LifetimeModuleTest (4 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 69 tests from 14 test cases ran. (31 ms total) +35: [==========] 69 tests from 14 test cases ran. (49 ms total) 35: [ PASSED ] 69 tests. -35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.04 sec +35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.06 sec test 36 Start 36: CoordinateIOTests @@ -19127,8 +19162,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (5 ms) -36: [----------] 1 test from OutputSelectorDeathTest (5 ms total) +36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (6 ms) +36: [----------] 1 test from OutputSelectorDeathTest (6 ms total) 36: 36: [----------] 5 tests from TrajectoryFrameWriterTest 36: [ RUN ] TrajectoryFrameWriterTest.RejectsWrongFiletype @@ -19140,7 +19175,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (2 ms) +36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (5 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19150,7 +19185,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (3 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (5 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19160,7 +19195,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (3 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (5 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19178,10 +19213,10 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (5 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (9 ms) 36: [ RUN ] TrajectoryFrameWriterTest.TNGOutputWorks 36: [ OK ] TrajectoryFrameWriterTest.TNGOutputWorks (0 ms) -36: [----------] 5 tests from TrajectoryFrameWriterTest (13 ms total) +36: [----------] 5 tests from TrajectoryFrameWriterTest (24 ms total) 36: 36: [----------] 5 tests from OutputAdapterContainer 36: [ RUN ] OutputAdapterContainer.MakeEmpty @@ -19219,7 +19254,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.RemovesExistingAtoms (3 ms) +36: [ OK ] SetAtomsTest.RemovesExistingAtoms (5 ms) 36: [ RUN ] SetAtomsTest.AddsNewAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19229,7 +19264,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.AddsNewAtoms (3 ms) +36: [ OK ] SetAtomsTest.AddsNewAtoms (4 ms) 36: [ RUN ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19239,7 +19274,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (2 ms) +36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (4 ms) 36: [ RUN ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19249,7 +19284,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (3 ms) +36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (5 ms) 36: [ RUN ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19259,8 +19294,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (3 ms) -36: [----------] 5 tests from SetAtomsTest (14 ms total) +36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (5 ms) +36: [----------] 5 tests from SetAtomsTest (24 ms total) 36: 36: [----------] 2 tests from SetBothTimeTest 36: [ RUN ] SetBothTimeTest.StartTimeZeroWorks @@ -19291,7 +19326,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (5 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19301,7 +19336,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (2 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19311,7 +19346,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19321,7 +19356,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19331,7 +19366,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (2 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (5 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19341,8 +19376,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (3 ms) -36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (16 ms total) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (5 ms) +36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (28 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/0 @@ -19354,7 +19389,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (2 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19364,7 +19399,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (2 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (5 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19374,17 +19409,17 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (3 ms) -36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (8 ms total) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (4 ms) +36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (13 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 -36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 (0 ms) +36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 (1 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 (0 ms) -36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (0 ms total) +36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (1 ms total) 36: 36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/0 @@ -19404,7 +19439,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19422,7 +19457,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (6 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19440,7 +19475,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (6 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19458,8 +19493,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (5 ms) -36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (22 ms total) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (9 ms) +36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (36 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/0 @@ -19471,7 +19506,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19481,7 +19516,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (2 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19491,8 +19526,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (3 ms) -36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (8 ms total) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (4 ms) +36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (14 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 @@ -19513,7 +19548,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19523,8 +19558,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (2 ms) -36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (5 ms total) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (5 ms) +36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (10 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 @@ -19547,7 +19582,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (2 ms) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19557,8 +19592,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (3 ms) -36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (5 ms total) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (4 ms) +36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (9 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 @@ -19581,7 +19616,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (3 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19591,7 +19626,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (2 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19601,7 +19636,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (3 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (5 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19611,13 +19646,13 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (3 ms) -36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (11 ms total) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (4 ms) +36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (18 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 64 tests from 19 test cases ran. (108 ms total) +36: [==========] 64 tests from 19 test cases ran. (183 ms total) 36: [ PASSED ] 64 tests. -36/54 Test #36: CoordinateIOTests ................... Passed 0.12 sec +36/54 Test #36: CoordinateIOTests ................... Passed 0.20 sec test 37 Start 37: TrajectoryAnalysisUnitTests @@ -19634,7 +19669,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 2, cmax: 4, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (3 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (4 ms) 37: [ RUN ] ClustsizeTest.NoMolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 37: There is one group in the index @@ -19643,7 +19678,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 1, cmax: 6, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (1 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (2 ms) 37: [ RUN ] ClustsizeTest.MolDefaultCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -19652,7 +19687,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (2 ms) +37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (71 ms) 37: [ RUN ] ClustsizeTest.MolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -19670,8 +19705,8 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolCSize (2 ms) -37: [----------] 5 tests from ClustsizeTest (10 ms total) +37: 50%100%[ OK ] ClustsizeTest.MolCSize (3 ms) +37: [----------] 5 tests from ClustsizeTest (83 ms total) 37: 37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp @@ -19694,7 +19729,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (3 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (4 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -19711,10 +19746,10 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (1 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (3 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) -37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (6 ms total) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) +37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (8 ms total) 37: 37: [----------] 11 tests from AngleModuleTest 37: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -19733,7 +19768,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesSimpleAngles (3 ms) +37: [ OK ] AngleModuleTest.ComputesSimpleAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesDihedrals 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19750,7 +19785,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesDihedrals (2 ms) +37: [ OK ] AngleModuleTest.ComputesDihedrals (4 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19784,7 +19819,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (3 ms) 37: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19801,7 +19836,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19837,7 +19872,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (3 ms) +37: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesMultipleAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19854,7 +19889,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesMultipleAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesMultipleAngles (4 ms) 37: [ RUN ] AngleModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19871,7 +19906,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesDynamicSelections (3 ms) +37: [ OK ] AngleModuleTest.HandlesDynamicSelections (4 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19888,7 +19923,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (2 ms) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (4 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19905,8 +19940,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (2 ms) -37: [----------] 11 tests from AngleModuleTest (27 ms total) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (3 ms) +37: [----------] 11 tests from AngleModuleTest (42 ms total) 37: 37: [----------] 4 tests from ConvertTrjModuleTest 37: [ RUN ] ConvertTrjModuleTest.WritesNormalOutput @@ -19914,20 +19949,20 @@ 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (9 ms) +37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (11 ms) 37: [ RUN ] ConvertTrjModuleTest.WritesAtomSubset 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (7 ms) +37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (11 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomAdding 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading frames from pdb file Reading frame 0 time 0.000 '', 24 atoms 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (1 ms) +37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (2 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomsAndSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -19935,7 +19970,7 @@ 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 37: [ OK ] ConvertTrjModuleTest.WorksWithAtomsAndSelection (2 ms) -37: [----------] 4 tests from ConvertTrjModuleTest (19 ms total) +37: [----------] 4 tests from ConvertTrjModuleTest (26 ms total) 37: 37: [----------] 3 tests from DistanceModuleTest 37: [ RUN ] DistanceModuleTest.ComputesDistances @@ -19958,7 +19993,7 @@ 37: Number of samples: 5 37: Average distance: 1.43246 nm 37: Standard deviation: 0.96700 nm -37: [ OK ] DistanceModuleTest.ComputesDistances (2 ms) +37: [ OK ] DistanceModuleTest.ComputesDistances (4 ms) 37: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19983,7 +20018,7 @@ 37: Number of samples: 4 37: Average distance: 1.81066 nm 37: Standard deviation: 0.79289 nm -37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (3 ms) +37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (4 ms) 37: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20004,8 +20039,8 @@ 37: Number of samples: 3 37: Average distance: 1.72076 nm 37: Standard deviation: 1.24839 nm -37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (2 ms) -37: [----------] 3 tests from DistanceModuleTest (9 ms total) +37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (5 ms) +37: [----------] 3 tests from DistanceModuleTest (14 ms total) 37: 37: [----------] 2 tests from ExtractClusterModuleTest 37: [ RUN ] ExtractClusterModuleTest.WorksWithAllAtoms @@ -20013,13 +20048,13 @@ 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 -37: [ OK ] ExtractClusterModuleTest.WorksWithAllAtoms (2 ms) +37: [ OK ] ExtractClusterModuleTest.WorksWithAllAtoms (4 ms) 37: [ RUN ] ExtractClusterModuleTest.WorksWithAtomSubset 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 -37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (2 ms) -37: [----------] 2 tests from ExtractClusterModuleTest (4 ms total) +37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (3 ms) +37: [----------] 2 tests from ExtractClusterModuleTest (7 ms total) 37: 37: [----------] 2 tests from FreeVolumeModuleTest 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -20083,7 +20118,7 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 37: Fractional free volume 0.194 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (139 ms) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (248 ms) 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -20135,8 +20170,8 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 37: Fractional free volume 0.200 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (139 ms) -37: [----------] 2 tests from FreeVolumeModuleTest (278 ms total) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (243 ms) +37: [----------] 2 tests from FreeVolumeModuleTest (491 ms total) 37: 37: [----------] 9 tests from PairDistanceModuleTest 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -20155,7 +20190,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (3 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (5 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20172,7 +20207,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20189,7 +20224,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (4 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20206,7 +20241,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20223,7 +20258,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (4 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20240,7 +20275,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (3 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (4 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20257,7 +20292,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (4 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20274,7 +20309,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (3 ms) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (4 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20291,8 +20326,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (2 ms) -37: [----------] 9 tests from PairDistanceModuleTest (22 ms total) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (4 ms) +37: [----------] 9 tests from PairDistanceModuleTest (35 ms total) 37: 37: [----------] 5 tests from RdfModuleTest 37: [ RUN ] RdfModuleTest.BasicTest @@ -20311,12 +20346,12 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.BasicTest (22 ms) +37: [ OK ] RdfModuleTest.BasicTest (34 ms) 37: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 37: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (14 ms) +37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (23 ms) 37: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20333,7 +20368,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (22 ms) +37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (34 ms) 37: [ RUN ] RdfModuleTest.CalculatesSurf 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20350,7 +20385,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesSurf (12 ms) +37: [ OK ] RdfModuleTest.CalculatesSurf (20 ms) 37: [ RUN ] RdfModuleTest.CalculatesXY 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20367,8 +20402,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesXY (23 ms) -37: [----------] 5 tests from RdfModuleTest (93 ms total) +37: [ OK ] RdfModuleTest.CalculatesXY (41 ms) +37: [----------] 5 tests from RdfModuleTest (152 ms total) 37: 37: [----------] 5 tests from SasaModuleTest 37: [ RUN ] SasaModuleTest.BasicTest @@ -20415,7 +20450,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.BasicTest (11 ms) +37: [ OK ] SasaModuleTest.BasicTest (15 ms) 37: [ RUN ] SasaModuleTest.HandlesSelectedResidues 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20460,7 +20495,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesSelectedResidues (6 ms) +37: [ OK ] SasaModuleTest.HandlesSelectedResidues (10 ms) 37: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20505,7 +20540,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (5 ms) +37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (9 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20550,7 +20585,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (7 ms) +37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (12 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20595,8 +20630,8 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (7 ms) -37: [----------] 5 tests from SasaModuleTest (38 ms total) +37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (11 ms) +37: [----------] 5 tests from SasaModuleTest (59 ms total) 37: 37: [----------] 8 tests from SelectModuleTest 37: [ RUN ] SelectModuleTest.BasicTest @@ -20617,7 +20652,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.BasicTest (4 ms) +37: [ OK ] SelectModuleTest.BasicTest (8 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20636,7 +20671,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (3 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (5 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20655,7 +20690,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (4 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (5 ms) 37: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20674,7 +20709,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (3 ms) +37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (5 ms) 37: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20693,7 +20728,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (3 ms) +37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (5 ms) 37: [ RUN ] SelectModuleTest.NormalizesSizes 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20710,7 +20745,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.NormalizesSizes (2 ms) +37: [ OK ] SelectModuleTest.NormalizesSizes (4 ms) 37: [ RUN ] SelectModuleTest.WritesResidueNumbers 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20744,31 +20779,31 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueIndices (2 ms) -37: [----------] 8 tests from SelectModuleTest (24 ms total) +37: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) +37: [----------] 8 tests from SelectModuleTest (39 ms total) 37: 37: [----------] 10 tests from SurfaceAreaTest 37: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 37: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPoints -37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (1 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (4 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius -37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (4 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints12 37: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints32 37: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints42 -37: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints122 -37: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms) 37: [ RUN ] SurfaceAreaTest.Computes100Points 37: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC -37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (2 ms) +37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (3 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (3 ms) -37: [----------] 10 tests from SurfaceAreaTest (11 ms total) +37: [----------] 10 tests from SurfaceAreaTest (20 ms total) 37: 37: [----------] 4 tests from TopologyInformation 37: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -20782,7 +20817,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithGroFile (3 ms) +37: [ OK ] TopologyInformation.WorksWithGroFile (5 ms) 37: [ RUN ] TopologyInformation.WorksWithPdbFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -20792,14 +20827,14 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithPdbFile (3 ms) +37: [ OK ] TopologyInformation.WorksWithPdbFile (5 ms) 37: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 37: 37: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp]: 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1879006173 +37: Setting the LD random seed to -407503105 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -20833,8 +20868,8 @@ 37: There are: 10 Protein residues 37: Analysing Protein... 37: This run will generate roughly 0 Mb of data -37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (381 ms) -37: [----------] 4 tests from TopologyInformation (387 ms total) +37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (602 ms) +37: [----------] 4 tests from TopologyInformation (612 ms total) 37: 37: [----------] 4 tests from TrajectoryModuleTest 37: [ RUN ] TrajectoryModuleTest.BasicTest @@ -20855,7 +20890,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.BasicTest (3 ms) +37: [ OK ] TrajectoryModuleTest.BasicTest (4 ms) 37: [ RUN ] TrajectoryModuleTest.PlotsXOnly 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20874,7 +20909,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.PlotsXOnly (2 ms) +37: [ OK ] TrajectoryModuleTest.PlotsXOnly (4 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20893,7 +20928,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (2 ms) +37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (4 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoForces 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20912,8 +20947,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoForces (3 ms) -37: [----------] 4 tests from TrajectoryModuleTest (11 ms total) +37: [ OK ] TrajectoryModuleTest.HandlesNoForces (4 ms) +37: [----------] 4 tests from TrajectoryModuleTest (16 ms total) 37: 37: [----------] 5 tests from UnionFinderTest 37: [ RUN ] UnionFinderTest.WorksEmpty @@ -20934,9 +20969,9 @@ 37: [----------] 1 test from MappedUnionFinderTest (0 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 82 tests from 16 test cases ran. (939 ms total) +37: [==========] 82 tests from 16 test cases ran. (1605 ms total) 37: [ PASSED ] 82 tests. -37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 0.95 sec +37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.62 sec test 38 Start 38: EnergyAnalysisUnitTests @@ -20953,8 +20988,8 @@ 38: 38: 38: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -38: [ OK ] DhdlTest.ExtractDhdl (8 ms) -38: [----------] 1 test from DhdlTest (8 ms total) +38: [ OK ] DhdlTest.ExtractDhdl (13 ms) +38: [----------] 1 test from DhdlTest (14 ms total) 38: 38: [----------] 1 test from OriresTest 38: [ RUN ] OriresTest.ExtractOrires @@ -20965,8 +21000,8 @@ 38: End your selection with 0 38: Selecting all 7 orientation restraints 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -38: [ OK ] OriresTest.ExtractOrires (9 ms) -38: [----------] 1 test from OriresTest (9 ms total) +38: [ OK ] OriresTest.ExtractOrires (13 ms) +38: [----------] 1 test from OriresTest (13 ms total) 38: 38: [----------] 3 tests from EnergyTest 38: [ RUN ] EnergyTest.ExtractEnergy @@ -20997,7 +21032,7 @@ 38: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 38: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 38: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) -38: [ OK ] EnergyTest.ExtractEnergy (3 ms) +38: [ OK ] EnergyTest.ExtractEnergy (4 ms) 38: [ RUN ] EnergyTest.ExtractEnergyByNumber 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: @@ -21026,7 +21061,7 @@ 38: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 38: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 38: Pres. DC -268.49 3 8.52175 13.2804 (bar) -38: [ OK ] EnergyTest.ExtractEnergyByNumber (2 ms) +38: [ OK ] EnergyTest.ExtractEnergyByNumber (3 ms) 38: [ RUN ] EnergyTest.ExtractEnergyMixed 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: @@ -21056,8 +21091,8 @@ 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 38: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -38: [ OK ] EnergyTest.ExtractEnergyMixed (2 ms) -38: [----------] 3 tests from EnergyTest (8 ms total) +38: [ OK ] EnergyTest.ExtractEnergyMixed (3 ms) +38: [----------] 3 tests from EnergyTest (12 ms total) 38: 38: [----------] 2 tests from ViscosityTest 38: [ RUN ] ViscosityTest.EinsteinViscosity @@ -21081,7 +21116,7 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosity (43 ms) +38: [ OK ] ViscosityTest.EinsteinViscosity (69 ms) 38: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -21103,13 +21138,13 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (39 ms) -38: [----------] 2 tests from ViscosityTest (83 ms total) +38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (45 ms) +38: [----------] 2 tests from ViscosityTest (114 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 7 tests from 4 test cases ran. (108 ms total) +38: [==========] 7 tests from 4 test cases ran. (153 ms total) 38: [ PASSED ] 7 tests. -38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.12 sec +38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.17 sec test 39 Start 39: ToolUnitTests @@ -21123,7 +21158,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -312554177 +39: Setting the LD random seed to -273973252 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -21169,7 +21204,7 @@ 39: comm-mode = Linear 39: nstcomm = 100 39: bd-fric = 0 -39: ld-seed = -312554177 +39: ld-seed = -273973252 39: emtol = 10 39: emstep = 0.01 39: niter = 20 @@ -24086,12 +24121,12 @@ 39: Compressed X: 156 (total 156 atoms) 39: Or. Res. Fit: 156 (total 156 atoms) 39: QMMM : 156 (total 156 atoms) -39: [ OK ] DumpTest.WorksWithTpr (13 ms) +39: [ OK ] DumpTest.WorksWithTpr (8 ms) 39: [ RUN ] DumpTest.WorksWithTprAndMdpWriting 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 39: [ OK ] DumpTest.WorksWithTprAndMdpWriting (1 ms) -39: [----------] 2 tests from DumpTest (14 ms total) +39: [----------] 2 tests from DumpTest (10 ms total) 39: 39: [----------] 4 tests from ReportMethodsTest 39: @@ -24099,7 +24134,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to 896948222 +39: Setting the LD random seed to 1727922121 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -24165,7 +24200,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (5 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (7 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -24178,7 +24213,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (3 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (6 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -24189,7 +24224,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (2 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (5 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -24203,7 +24238,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (2 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (5 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -24217,7 +24252,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (3 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (5 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -24228,8 +24263,8 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (17 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (5 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (33 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -24242,7 +24277,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24280,7 +24315,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24294,7 +24329,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24305,13 +24340,13 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (2 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (4 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 18 tests from 4 test cases ran. (805 ms total) +39: [==========] 18 tests from 4 test cases ran. (1276 ms total) 39: [ PASSED ] 18 tests. -39/54 Test #39: ToolUnitTests ....................... Passed 0.82 sec +39/54 Test #39: ToolUnitTests ....................... Passed 1.29 sec test 40 Start 40: FileIOTests @@ -24321,9 +24356,9 @@ 40: [----------] Global test environment set-up. 40: [----------] 2 tests from FileMD5Test 40: [ RUN ] FileMD5Test.CanComputeMD5 -40: [ OK ] FileMD5Test.CanComputeMD5 (0 ms) +40: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 40: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong -40: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (1 ms) +40: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) 40: [----------] 2 tests from FileMD5Test (1 ms total) 40: 40: [----------] 3 tests from MrcSerializer @@ -24332,25 +24367,25 @@ 40: [ RUN ] MrcSerializer.DefaultHeaderHasRightSerialSize 40: [ OK ] MrcSerializer.DefaultHeaderHasRightSerialSize (0 ms) 40: [ RUN ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip -40: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (0 ms) -40: [----------] 3 tests from MrcSerializer (0 ms total) +40: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (1 ms) +40: [----------] 3 tests from MrcSerializer (2 ms total) 40: 40: [----------] 4 tests from MrcDensityMap 40: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -40: [ OK ] MrcDensityMap.RoundTripIsIdempotent (1 ms) +40: [ OK ] MrcDensityMap.RoundTripIsIdempotent (0 ms) 40: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent -40: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) +40: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (1 ms) 40: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 40: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 40: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) -40: [----------] 4 tests from MrcDensityMap (2 ms total) +40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (2 ms) +40: [----------] 4 tests from MrcDensityMap (3 ms total) 40: 40: [----------] 8 tests from MrcDensityMapHeaderTest 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader 40: [ OK ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsCorrect -40: [ OK ] MrcDensityMapHeaderTest.DataSizeIsCorrect (1 ms) +40: [ OK ] MrcDensityMapHeaderTest.DataSizeIsCorrect (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeThrowsWhenInvalid 40: [ OK ] MrcDensityMapHeaderTest.DataSizeThrowsWhenInvalid (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformNoOriginGiven @@ -24363,7 +24398,7 @@ 40: [ OK ] MrcDensityMapHeaderTest.GetsCorrectExtents (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.IsSane 40: [ OK ] MrcDensityMapHeaderTest.IsSane (0 ms) -40: [----------] 8 tests from MrcDensityMapHeaderTest (1 ms total) +40: [----------] 8 tests from MrcDensityMapHeaderTest (0 ms total) 40: 40: [----------] 9 tests from ReadTest 40: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -24425,10 +24460,10 @@ 40: [ RUN ] TngTest.CanOpenTngFile 40: TNG library: Cannot open file spc2-traj.tng. /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c: 890 40: TNG library: Cannot open file spc2-traj.tng. /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c: 890 -40: [ OK ] TngTest.CanOpenTngFile (0 ms) +40: [ OK ] TngTest.CanOpenTngFile (1 ms) 40: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 40: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -40: [----------] 2 tests from TngTest (0 ms total) +40: [----------] 2 tests from TngTest (1 ms total) 40: 40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 @@ -24436,13 +24471,13 @@ 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) +40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 33 tests from 8 test cases ran. (6 ms total) +40: [==========] 33 tests from 8 test cases ran. (10 ms total) 40: [ PASSED ] 33 tests. 40/54 Test #40: FileIOTests ......................... Passed 0.02 sec test 41 @@ -24459,19 +24494,19 @@ 41: 41: [----------] 15 tests from IndexBlockTest 41: [ RUN ] IndexBlockTest.CreatesUnknownBlock -41: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) +41: [ OK ] IndexBlockTest.CreatesUnknownBlock (1 ms) 41: [ RUN ] IndexBlockTest.CreatesAtomBlock -41: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) +41: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 41: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (1 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology -41: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) +41: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (1 ms) 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology -41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (1 ms) +41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology -41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) +41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (1 ms) 41: [ RUN ] IndexBlockTest.CreatesSingleBlock -41: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) +41: [ OK ] IndexBlockTest.CreatesSingleBlock (1 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 41: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive @@ -24485,35 +24520,35 @@ 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive -41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (1 ms) +41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -41: [----------] 15 tests from IndexBlockTest (3 ms total) +41: [----------] 15 tests from IndexBlockTest (6 ms total) 41: 41: [----------] 11 tests from IndexMapTest 41: [ RUN ] IndexMapTest.InitializesAtomBlock 41: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom -41: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (1 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 41: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 41: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule -41: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (1 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll -41: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (1 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 41: [ RUN ] IndexMapTest.InitializesMoleculeBlock -41: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) +41: [ OK ] IndexMapTest.InitializesMoleculeBlock (1 ms) 41: [ RUN ] IndexMapTest.MapsSingleBlock 41: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 41: [ RUN ] IndexMapTest.MapsResidueBlocks 41: [ OK ] IndexMapTest.MapsResidueBlocks (1 ms) 41: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask -41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) +41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms) 41: [ RUN ] IndexMapTest.HandlesMultipleRequests 41: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -41: [----------] 11 tests from IndexMapTest (4 ms total) +41: [----------] 11 tests from IndexMapTest (6 ms total) 41: 41: [----------] 3 tests from IndexGroupsAndNamesTest 41: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -24526,23 +24561,23 @@ 41: 41: [----------] 15 tests from NeighborhoodSearchTest 41: [ RUN ] NeighborhoodSearchTest.SimpleSearch -41: [ OK ] NeighborhoodSearchTest.SimpleSearch (13 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearch (19 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (12 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (19 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchBox -41: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchBox (4 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (8 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (12 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (7 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (4 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 41: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (33 ms) +41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (58 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 41: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -24552,16 +24587,16 @@ 41: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 41: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -41: [----------] 15 tests from NeighborhoodSearchTest (81 ms total) +41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (2 ms) +41: [----------] 15 tests from NeighborhoodSearchTest (134 ms total) 41: 41: [----------] 12 tests from PositionCalculationTest 41: [ RUN ] PositionCalculationTest.ComputesAtomPositions 41: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) +41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions @@ -24571,18 +24606,18 @@ 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) +41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionMask -41: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms) +41: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms -41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) +41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) +41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) 41: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) 41: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -41: [----------] 12 tests from PositionCalculationTest (5 ms total) +41: [----------] 12 tests from PositionCalculationTest (9 ms total) 41: 41: [----------] 29 tests from SelectionCollectionTest 41: [ RUN ] SelectionCollectionTest.HandlesNoSelections @@ -24592,9 +24627,9 @@ 41: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 41: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions @@ -24606,62 +24641,62 @@ 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference -41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 -41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets -41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 -41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) -41: [----------] 29 tests from SelectionCollectionTest (9 ms total) +41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) +41: [----------] 29 tests from SelectionCollectionTest (10 ms total) 41: 41: [----------] 14 tests from SelectionCollectionInteractiveTest 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 41: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline @@ -24669,30 +24704,30 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -41: [----------] 14 tests from SelectionCollectionInteractiveTest (7 ms total) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) +41: [----------] 14 tests from SelectionCollectionInteractiveTest (12 ms total) 41: 41: [----------] 66 tests from SelectionCollectionDataTest 41: [ RUN ] SelectionCollectionDataTest.HandlesAllNone -41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResnr 41: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 41: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 41: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesChain 41: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMass @@ -24702,31 +24737,31 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 41: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 41: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBeta -41: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResname -41: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (5 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (3 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier @@ -24738,17 +24773,17 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames -41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions @@ -24756,7 +24791,7 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching @@ -24764,13 +24799,13 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 41: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean -41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 41: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame -41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods @@ -24778,19 +24813,19 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables @@ -24798,18 +24833,18 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -41: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -41: [----------] 66 tests from SelectionCollectionDataTest (56 ms total) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) +41: [----------] 66 tests from SelectionCollectionDataTest (81 ms total) 41: 41: [----------] 17 tests from SelectionOptionTest 41: [ RUN ] SelectionOptionTest.ParsesSimpleSelection @@ -24819,23 +24854,23 @@ 41: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired -41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) +41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptySelections -41: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms) +41: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 41: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelections -41: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 41: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesAdjuster -41: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) +41: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection @@ -24846,7 +24881,7 @@ 41: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -41: [----------] 17 tests from SelectionOptionTest (4 ms total) +41: [----------] 17 tests from SelectionOptionTest (5 ms total) 41: 41: [----------] 9 tests from SelectionFileOptionTest 41: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile @@ -24854,11 +24889,11 @@ 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet -41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile @@ -24867,12 +24902,12 @@ 41: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 41: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -41: [----------] 9 tests from SelectionFileOptionTest (1 ms total) +41: [----------] 9 tests from SelectionFileOptionTest (2 ms total) 41: 41: [----------] Global test environment tear-down -41: [==========] 192 tests from 11 test cases ran. (170 ms total) +41: [==========] 192 tests from 11 test cases ran. (265 ms total) 41: [ PASSED ] 192 tests. -41/54 Test #41: SelectionUnitTests .................. Passed 0.18 sec +41/54 Test #41: SelectionUnitTests .................. Passed 0.28 sec test 42 Start 42: MdrunOutputTests @@ -24882,12 +24917,12 @@ 42: [----------] Global test environment set-up. 42: [----------] 1 test from MdrunTest 42: [ RUN ] MdrunTest.WritesHelp -42: [ OK ] MdrunTest.WritesHelp (2 ms) -42: [----------] 1 test from MdrunTest (2 ms total) +42: [ OK ] MdrunTest.WritesHelp (3 ms) +42: [----------] 1 test from MdrunTest (3 ms total) 42: 42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -42: Setting the LD random seed to -2098199 +42: Setting the LD random seed to -1380983447 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -24906,7 +24941,7 @@ 42: 42: 42: There were 2 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -24933,9 +24968,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.014 0.007 198.8 +42: Time: 0.028 0.014 199.1 42: (ns/day) (hour/ns) -42: Performance: 25.415 0.944 +42: Performance: 12.253 1.959 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -24950,9 +24985,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (46 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (40 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -42: Setting the LD random seed to -445939713 +42: Setting the LD random seed to 1454374842 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -24971,7 +25006,7 @@ 42: 42: 42: There were 2 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -24998,9 +25033,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.010 0.005 198.6 +42: Time: 0.029 0.015 199.1 42: (ns/day) (hour/ns) -42: Performance: 32.804 0.732 +42: Performance: 11.696 2.052 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25015,9 +25050,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (10 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (22 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -42: Setting the LD random seed to -51521537 +42: Setting the LD random seed to -620888712 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -25036,7 +25071,7 @@ 42: 42: 42: There were 2 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25063,9 +25098,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.009 0.005 198.5 +42: Time: 0.021 0.011 199.0 42: (ns/day) (hour/ns) -42: Performance: 36.544 0.657 +42: Performance: 16.371 1.466 42: Reading frame 0 time 0.000 42: # Atoms 3 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25080,8 +25115,8 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (9 ms) -42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (65 ms total) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (16 ms) +42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (78 ms total) 42: 42: [----------] 2 tests from Argon12/OutputFiles 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/0 @@ -25105,7 +25140,7 @@ 42: 42: 42: There were 3 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25132,10 +25167,10 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.011 0.006 198.7 +42: Time: 0.024 0.012 199.2 42: (ns/day) (hour/ns) -42: Performance: 261.592 0.092 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (10 ms) +42: Performance: 120.853 0.199 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (20 ms) 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/1 42: 42: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Argon12_OutputFiles_FilesArePresent_1_input.mdp]: @@ -25157,7 +25192,7 @@ 42: 42: 42: There were 3 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25184,15 +25219,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.011 0.006 199.2 +42: Time: 0.027 0.014 199.4 42: (ns/day) (hour/ns) -42: Performance: 254.465 0.094 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (11 ms) -42: [----------] 2 tests from Argon12/OutputFiles (21 ms total) +42: Performance: 108.344 0.222 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (19 ms) +42: [----------] 2 tests from Argon12/OutputFiles (39 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/Trajectories 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 -42: Setting the LD random seed to 1576991710 +42: Setting the LD random seed to 1610136895 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25205,7 +25240,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25233,12 +25268,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.016 0.008 198.9 +42: Time: 0.030 0.015 199.1 42: (ns/day) (hour/ns) -42: Performance: 76.226 0.315 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (14 ms) +42: Performance: 39.588 0.606 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (24 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 -42: Setting the LD random seed to -18613249 +42: Setting the LD random seed to -274137105 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25251,7 +25286,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25279,12 +25314,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.016 0.008 198.9 +42: Time: 0.030 0.015 199.1 42: (ns/day) (hour/ns) -42: Performance: 74.818 0.321 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (13 ms) +42: Performance: 39.968 0.600 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (23 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 -42: Setting the LD random seed to 2135884661 +42: Setting the LD random seed to -8487169 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25297,7 +25332,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25325,15 +25360,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.014 0.007 198.7 +42: Time: 0.030 0.015 199.1 42: (ns/day) (hour/ns) -42: Performance: 84.883 0.283 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (13 ms) -42: [----------] 3 tests from MdrunCanWrite/Trajectories (40 ms total) +42: Performance: 39.783 0.603 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (23 ms) +42: [----------] 3 tests from MdrunCanWrite/Trajectories (70 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/NptTrajectories 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 -42: Setting the LD random seed to 1038343087 +42: Setting the LD random seed to 1708908223 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25346,7 +25381,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25374,12 +25409,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.007 0.004 197.9 +42: Time: 0.017 0.009 198.5 42: (ns/day) (hour/ns) -42: Performance: 70.010 0.343 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (9 ms) +42: Performance: 29.833 0.804 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (17 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 -42: Setting the LD random seed to 1593049079 +42: Setting the LD random seed to -136325401 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25392,7 +25427,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25420,12 +25455,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.008 0.004 197.8 +42: Time: 0.016 0.008 198.2 42: (ns/day) (hour/ns) -42: Performance: 64.283 0.373 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (9 ms) +42: Performance: 32.375 0.741 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (15 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 -42: Setting the LD random seed to -135020561 +42: Setting the LD random seed to -26214417 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25438,7 +25473,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -25466,16 +25501,16 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.008 0.004 197.9 +42: Time: 0.016 0.008 198.6 42: (ns/day) (hour/ns) -42: Performance: 62.679 0.383 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (10 ms) -42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (28 ms total) +42: Performance: 31.447 0.763 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (16 ms) +42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (48 ms total) 42: 42: [----------] Global test environment tear-down -42: [==========] 12 tests from 5 test cases ran. (156 ms total) +42: [==========] 12 tests from 5 test cases ran. (238 ms total) 42: [ PASSED ] 12 tests. -42/54 Test #42: MdrunOutputTests .................... Passed 0.17 sec +42/54 Test #42: MdrunOutputTests .................... Passed 0.25 sec test 43 Start 43: MdrunModulesTests @@ -25485,11 +25520,11 @@ 43: [----------] Global test environment set-up. 43: [----------] 4 tests from DensityFittingTest 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct -43: Setting the LD random seed to -1107345925 +43: Setting the LD random seed to -136061239 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25517,16 +25552,16 @@ 43: Steepest Descents did not converge to Fmax < 10 in 3 steps. 43: Potential Energy = -3.8565386e+03 43: Maximum force = 2.8846851e+03 on atom 3 -43: Norm of force = 1.0754446e+03 +43: Norm of force = 1.0754445e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectInnerProduct.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (45 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (25 ms) 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy -43: Setting the LD random seed to -260048321 +43: Setting the LD random seed to -39129345 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25557,17 +25592,17 @@ 43: Norm of force = 1.2549792e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectForRelativeEntropy.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (6 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (7 ms) 43: [ RUN ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch 43: 43: [WARNING] /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-death-test.cc:836:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 2 threads. -43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (4 ms) +43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (7 ms) 43: [ RUN ] DensityFittingTest.CheckpointWorks 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks_input.mdp]: 43: Setting nstcalcenergy (100) equal to nstenergy (2) 43: -43: Setting the LD random seed to -4730721 +43: Setting the LD random seed to -1466067975 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25578,7 +25613,7 @@ 43: 43: 43: There were 2 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25605,10 +25640,10 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.008 0.004 198.4 +43: Time: 0.018 0.009 198.7 43: (ns/day) (hour/ns) -43: Performance: 61.099 0.393 -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Performance: 28.768 0.834 +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25632,12 +25667,12 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.007 0.004 198.2 +43: Time: 0.015 0.007 198.3 43: (ns/day) (hour/ns) -43: Performance: 118.331 0.203 +43: Performance: 58.554 0.410 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.edr as single precision energy file -43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (15 ms) -43: [----------] 4 tests from DensityFittingTest (70 ms total) +43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (25 ms) +43: [----------] 4 tests from DensityFittingTest (64 ms total) 43: 43: [----------] 4 tests from MimicTest 43: [ RUN ] MimicTest.OneQuantumMol @@ -25646,7 +25681,7 @@ 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -594527 +43: Setting the LD random seed to -134308868 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25665,7 +25700,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25686,23 +25721,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 15 % of the run time was spent in pair search, +43: NOTE: 16 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 181.1 +43: Time: 0.001 0.000 187.7 43: (ns/day) (hour/ns) -43: Performance: 395.998 0.061 +43: Performance: 307.651 0.078 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.OneQuantumMol (5 ms) +43: [ OK ] MimicTest.OneQuantumMol (8 ms) 43: [ RUN ] MimicTest.AllQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -174211476 +43: Setting the LD random seed to -911278147 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25721,7 +25756,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25742,23 +25777,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 16 % of the run time was spent in pair search, +43: NOTE: 14 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 186.1 +43: Time: 0.001 0.000 187.8 43: (ns/day) (hour/ns) -43: Performance: 420.480 0.057 +43: Performance: 309.611 0.078 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.AllQuantumMol (5 ms) +43: [ OK ] MimicTest.AllQuantumMol (7 ms) 43: [ RUN ] MimicTest.TwoQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -18874418 +43: Setting the LD random seed to -1138762395 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25777,7 +25812,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25802,19 +25837,19 @@ 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 185.7 +43: Time: 0.001 0.000 187.5 43: (ns/day) (hour/ns) -43: Performance: 418.890 0.057 +43: Performance: 318.821 0.075 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.TwoQuantumMol (5 ms) +43: [ OK ] MimicTest.TwoQuantumMol (7 ms) 43: [ RUN ] MimicTest.BondCuts 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to 2080322559 +43: Setting the LD random seed to 1744127966 43: Generated 2211 of the 2211 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 2211 of the 2211 1-4 parameter combinations @@ -25833,7 +25868,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25858,21 +25893,21 @@ 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 190.6 +43: Time: 0.001 0.000 190.7 43: (ns/day) (hour/ns) -43: Performance: 255.580 0.094 +43: Performance: 198.360 0.121 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 43: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 43: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 43: Note that mdrun will redetermine rlist based on the actual pair-list setup 43: This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.BondCuts (17 ms) -43: [----------] 4 tests from MimicTest (32 ms total) +43: [ OK ] MimicTest.BondCuts (25 ms) +43: [----------] 4 tests from MimicTest (47 ms total) 43: 43: [----------] 2 tests from WithIntegrator/ImdTest 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/0 -43: Setting the LD random seed to -171738132 +43: Setting the LD random seed to -1216455752 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -25894,7 +25929,7 @@ 43: 43: 43: There were 2 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25916,7 +25951,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 35411. +43: IMD: Listening for IMD connection on port 39501. 43: IMD: -imdwait not set, starting simulation. 43: starting mdrun 'Glycine' 43: 2 steps, 0.0 ps. @@ -25929,17 +25964,17 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.011 0.005 198.3 +43: Time: 0.023 0.012 198.7 43: (ns/day) (hour/ns) -43: Performance: 97.145 0.247 -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (103 ms) +43: Performance: 44.359 0.541 +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (196 ms) 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/1 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithIntegrator_ImdTest_ImdCanRun_1_input.mdp]: 43: Setting tcoupl from 'V-rescale' to 'no'. Temperature coupling does not 43: apply to steep. 43: -43: Setting the LD random seed to -3407876 +43: Setting the LD random seed to -3277827 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -25954,7 +25989,7 @@ 43: 43: 43: There were 2 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -25974,7 +26009,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 56301. +43: IMD: Listening for IMD connection on port 51355. 43: IMD: -imdwait not set, starting simulation. 43: 43: Steepest Descents: @@ -25991,13 +26026,13 @@ 43: Maximum force = 1.7794875e+04 on atom 9 43: Norm of force = 7.8732895e+03 43: This run will generate roughly 0 Mb of data -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (93 ms) -43: [----------] 2 tests from WithIntegrator/ImdTest (196 ms total) +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (177 ms) +43: [----------] 2 tests from WithIntegrator/ImdTest (373 ms total) 43: 43: [----------] Global test environment tear-down -43: [==========] 10 tests from 3 test cases ran. (298 ms total) +43: [==========] 10 tests from 3 test cases ran. (484 ms total) 43: [ PASSED ] 10 tests. -43/54 Test #43: MdrunModulesTests ................... Passed 0.31 sec +43/54 Test #43: MdrunModulesTests ................... Passed 0.50 sec test 44 Start 44: MdrunIOTests @@ -26012,7 +26047,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -276890625 +44: Setting the LD random seed to -1077954649 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26035,14 +26070,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.EmptyMdpFileWorks (3 ms) +44: [ OK ] GromppTest.EmptyMdpFileWorks (5 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorks 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorks_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to 1957674623 +44: Setting the LD random seed to -59850758 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26078,7 +26113,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -37774401 +44: Setting the LD random seed to -117997569 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26114,11 +26149,11 @@ 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data 44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (3 ms) -44: [----------] 3 tests from GromppTest (9 ms total) +44: [----------] 3 tests from GromppTest (12 ms total) 44: 44: [----------] 6 tests from MdrunTerminationTest 44: [ RUN ] MdrunTerminationTest.CheckpointRestartAppendsByDefault -44: Setting the LD random seed to -1073741825 +44: Setting the LD random seed to -1495417969 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26132,7 +26167,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26160,15 +26195,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 198.0 +44: Time: 0.019 0.009 198.7 44: (ns/day) (hour/ns) -44: Performance: 67.847 0.354 +44: Performance: 27.462 0.874 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26190,12 +26225,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 196.0 +44: Time: 0.011 0.006 198.0 44: (ns/day) (hour/ns) -44: Performance: 106.756 0.225 +44: Performance: 45.140 0.532 44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (43 ms) 44: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts -44: Setting the LD random seed to -4194376 +44: Setting the LD random seed to -1083187492 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26209,7 +26244,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26229,7 +26264,7 @@ 44: starting mdrun 'spc2' 44: 100 steps, 0.1 ps. 44: -44: Step 5: Run time exceeded 0.000 hours, will terminate the run within 2 steps +44: Step 4: Run time exceeded 0.000 hours, will terminate the run within 2 steps 44: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 44: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 44: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm @@ -26237,15 +26272,15 @@ 44: This run will generate roughly 0 Mb of data 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.8 +44: Time: 0.015 0.008 198.4 44: (ns/day) (hour/ns) -44: Performance: 179.073 0.134 +44: Performance: 67.070 0.358 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 102 44: Writing statusfile with starting step 0 and length 102 steps... 44: time 0.000 and length 0.102 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26262,17 +26297,17 @@ 44: This can lead to significant performance degradation. 44: Consider using -pin on (and -pinoffset in case you run multiple jobs). 44: starting mdrun 'spc2' -44: 102 steps, 0.1 ps (continuing from step 6, 0.0 ps). +44: 102 steps, 0.1 ps (continuing from step 5, 0.0 ps). 44: 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.7 +44: Time: 0.016 0.008 198.1 44: (ns/day) (hour/ns) -44: Performance: 1468.943 0.016 -44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (16 ms) +44: Performance: 1060.778 0.023 +44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (27 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend -44: Setting the LD random seed to -370151937 +44: Setting the LD random seed to -1147208193 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26286,7 +26321,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26314,15 +26349,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.8 +44: Time: 0.015 0.008 198.5 44: (ns/day) (hour/ns) -44: Performance: 77.363 0.310 +44: Performance: 33.941 0.707 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26345,15 +26380,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 199.1 +44: Time: 0.018 0.009 199.2 44: (ns/day) (hour/ns) -44: Performance: 80.161 0.299 +44: Performance: 29.055 0.826 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 6 44: Writing statusfile with starting step 0 and length 6 steps... 44: time 0.000 and length 0.006 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26376,15 +26411,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 199.0 +44: Time: 0.015 0.008 199.4 44: (ns/day) (hour/ns) -44: Performance: 90.765 0.264 +44: Performance: 33.601 0.714 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 8 44: Writing statusfile with starting step 0 and length 8 steps... 44: time 0.000 and length 0.008 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26407,10 +26442,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 199.1 +44: Time: 0.017 0.008 199.4 44: (ns/day) (hour/ns) -44: Performance: 82.869 0.290 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 30.756 0.780 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26430,16 +26465,16 @@ 44: starting mdrun 'spc2' 44: 8 steps, 0.0 ps (continuing from step 8, 0.0 ps). 44: -44: NOTE: 21 % of the run time was spent in pair search, +44: NOTE: 24 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.000 0.000 177.9 +44: Time: 0.000 0.000 176.3 44: (ns/day) (hour/ns) -44: Performance: 639.389 0.038 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (24 ms) +44: Performance: 535.646 0.045 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (51 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile -44: Setting the LD random seed to 2046031823 +44: Setting the LD random seed to 2147348855 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26453,7 +26488,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26481,15 +26516,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 198.1 +44: Time: 0.016 0.008 198.5 44: (ns/day) (hour/ns) -44: Performance: 66.462 0.361 +44: Performance: 32.713 0.734 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26512,12 +26547,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.9 +44: Time: 0.016 0.008 198.5 44: (ns/day) (hour/ns) -44: Performance: 124.761 0.192 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (13 ms) +44: Performance: 52.575 0.456 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (25 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile -44: Setting the LD random seed to -130619905 +44: Setting the LD random seed to -201478147 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26531,7 +26566,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26559,17 +26594,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 198.1 +44: Time: 0.018 0.009 198.7 44: (ns/day) (hour/ns) -44: Performance: 67.121 0.358 +44: Performance: 28.574 0.840 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (9 ms) +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (17 ms) 44: [ RUN ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles -44: Setting the LD random seed to -33591373 +44: Setting the LD random seed to -1181737 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26583,7 +26618,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26611,15 +26646,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.8 +44: Time: 0.016 0.008 198.3 44: (ns/day) (hour/ns) -44: Performance: 77.756 0.309 +44: Performance: 32.348 0.742 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26642,11 +26677,11 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 199.1 +44: Time: 0.027 0.013 199.6 44: (ns/day) (hour/ns) -44: Performance: 79.717 0.301 -44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (12 ms) -44: [----------] 6 tests from MdrunTerminationTest (117 ms total) +44: Performance: 19.205 1.250 +44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (30 ms) +44: [----------] 6 tests from MdrunTerminationTest (193 ms total) 44: 44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -26690,7 +26725,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26722,10 +26757,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 287.805 0.083 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 130.421 0.184 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26747,10 +26782,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.6 +44: Time: 0.021 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 163.500 0.147 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 74.490 0.322 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26772,13 +26807,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.024 0.012 199.1 44: (ns/day) (hour/ns) -44: Performance: 156.793 0.153 +44: Performance: 65.809 0.365 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (48 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -26820,7 +26855,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26852,10 +26887,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 199.1 +44: Time: 0.023 0.012 199.4 44: (ns/day) (hour/ns) -44: Performance: 308.396 0.078 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 126.010 0.190 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26877,10 +26912,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.026 0.013 199.5 44: (ns/day) (hour/ns) -44: Performance: 161.791 0.148 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 58.761 0.408 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26902,13 +26937,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 199.4 +44: Time: 0.060 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 140.015 0.171 +44: Performance: 25.815 0.930 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (70 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -26940,7 +26975,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26973,10 +27008,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.035 0.018 199.3 44: (ns/day) (hour/ns) -44: Performance: 282.177 0.085 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 82.673 0.290 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -26999,10 +27034,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.031 0.015 199.1 44: (ns/day) (hour/ns) -44: Performance: 172.348 0.139 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 50.174 0.478 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27025,13 +27060,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.027 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 172.066 0.139 +44: Performance: 57.686 0.416 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (61 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -27063,7 +27098,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27096,10 +27131,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 304.158 0.079 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 144.004 0.167 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27122,10 +27157,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.021 0.010 198.5 44: (ns/day) (hour/ns) -44: Performance: 156.637 0.153 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 74.874 0.321 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27148,13 +27183,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.9 +44: Time: 0.023 0.011 198.7 44: (ns/day) (hour/ns) -44: Performance: 129.654 0.185 +44: Performance: 67.909 0.353 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (47 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -27212,7 +27247,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27244,10 +27279,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.024 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 301.142 0.080 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 124.076 0.193 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27269,10 +27304,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 197.7 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 188.782 0.127 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 76.656 0.313 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27294,13 +27329,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 198.4 +44: Time: 0.034 0.017 199.2 44: (ns/day) (hour/ns) -44: Performance: 178.322 0.135 +44: Performance: 45.399 0.529 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (23 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (54 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -27358,7 +27393,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27390,10 +27425,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 199.4 +44: Time: 0.026 0.013 199.5 44: (ns/day) (hour/ns) -44: Performance: 267.354 0.090 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 111.266 0.216 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27415,10 +27450,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.026 0.013 199.4 44: (ns/day) (hour/ns) -44: Performance: 154.903 0.155 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 58.806 0.408 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27440,13 +27475,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 199.3 +44: Time: 0.104 0.052 199.8 44: (ns/day) (hour/ns) -44: Performance: 164.175 0.146 +44: Performance: 14.915 1.609 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (94 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -27494,7 +27529,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27527,10 +27562,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.5 +44: Time: 0.023 0.012 198.7 44: (ns/day) (hour/ns) -44: Performance: 267.330 0.090 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 126.766 0.189 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27553,10 +27588,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 197.7 +44: Time: 0.019 0.010 198.5 44: (ns/day) (hour/ns) -44: Performance: 163.397 0.147 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 80.103 0.300 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27579,13 +27614,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.022 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 152.078 0.158 +44: Performance: 69.480 0.345 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (49 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_input.mdp]: @@ -27633,7 +27668,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27666,10 +27701,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.027 0.014 199.0 44: (ns/day) (hour/ns) -44: Performance: 290.037 0.083 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 107.995 0.222 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27692,10 +27727,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 197.8 +44: Time: 0.024 0.012 198.9 44: (ns/day) (hour/ns) -44: Performance: 159.835 0.150 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 63.680 0.377 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27718,13 +27753,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 197.7 +44: Time: 0.028 0.014 199.0 44: (ns/day) (hour/ns) -44: Performance: 160.823 0.149 +44: Performance: 55.215 0.435 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (55 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_input.mdp]: @@ -27814,7 +27849,7 @@ 44: 44: 44: There were 6 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27848,10 +27883,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 198.4 +44: Time: 0.029 0.014 198.8 44: (ns/day) (hour/ns) -44: Performance: 213.035 0.113 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 101.327 0.237 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27873,10 +27908,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 196.6 +44: Time: 0.025 0.013 198.6 44: (ns/day) (hour/ns) -44: Performance: 130.592 0.184 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 61.533 0.390 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -27898,13 +27933,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.2 +44: Time: 0.030 0.015 198.0 44: (ns/day) (hour/ns) -44: Performance: 129.003 0.186 +44: Performance: 51.748 0.464 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (53 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (97 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -27994,7 +28029,7 @@ 44: 44: 44: There were 6 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28028,10 +28063,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.008 198.6 +44: Time: 0.029 0.014 198.7 44: (ns/day) (hour/ns) -44: Performance: 193.094 0.124 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 101.799 0.236 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28053,10 +28088,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.2 +44: Time: 0.027 0.013 198.6 44: (ns/day) (hour/ns) -44: Performance: 130.442 0.184 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 57.604 0.417 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28078,13 +28113,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.006 198.3 +44: Time: 0.025 0.013 198.4 44: (ns/day) (hour/ns) -44: Performance: 123.182 0.195 +44: Performance: 61.480 0.390 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (50 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (90 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_input.mdp]: @@ -28164,7 +28199,7 @@ 44: 44: 44: There were 5 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28199,10 +28234,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 198.5 +44: Time: 0.028 0.014 198.6 44: (ns/day) (hour/ns) -44: Performance: 207.202 0.116 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 105.804 0.227 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28225,10 +28260,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.2 +44: Time: 0.025 0.013 198.6 44: (ns/day) (hour/ns) -44: Performance: 140.701 0.171 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 61.803 0.388 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28251,13 +28286,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.2 +44: Time: 0.028 0.014 198.8 44: (ns/day) (hour/ns) -44: Performance: 135.970 0.177 +44: Performance: 54.846 0.438 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (76 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (144 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_input.mdp]: @@ -28337,7 +28372,7 @@ 44: 44: 44: There were 5 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28372,10 +28407,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.017 0.008 198.8 +44: Time: 0.029 0.015 199.0 44: (ns/day) (hour/ns) -44: Performance: 175.458 0.137 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 99.484 0.241 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28398,10 +28433,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 198.5 +44: Time: 0.025 0.013 198.7 44: (ns/day) (hour/ns) -44: Performance: 119.586 0.201 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 61.914 0.388 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28424,14 +28459,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.4 +44: Time: 0.027 0.014 198.8 44: (ns/day) (hour/ns) -44: Performance: 126.980 0.189 +44: Performance: 56.849 0.422 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (69 ms) -44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (445 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (126 ms) +44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (936 ms total) 44: 44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -28493,7 +28528,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28529,10 +28564,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.007 198.4 +44: Time: 0.035 0.018 198.9 44: (ns/day) (hour/ns) -44: Performance: 197.906 0.121 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 82.572 0.291 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28554,10 +28589,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.354 0.177 199.9 +44: Time: 0.034 0.017 198.4 44: (ns/day) (hour/ns) -44: Performance: 4.396 5.459 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 45.553 0.527 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28579,13 +28614,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 198.3 +44: Time: 0.033 0.017 198.8 44: (ns/day) (hour/ns) -44: Performance: 115.284 0.208 +44: Performance: 47.065 0.510 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (221 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (102 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -28645,7 +28680,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28681,10 +28716,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.008 199.4 +44: Time: 0.041 0.021 199.5 44: (ns/day) (hour/ns) -44: Performance: 191.876 0.125 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 70.837 0.339 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28706,10 +28741,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 199.4 +44: Time: 0.036 0.018 199.4 44: (ns/day) (hour/ns) -44: Performance: 115.592 0.208 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 42.648 0.563 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28731,13 +28766,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 199.3 +44: Time: 0.037 0.018 199.5 44: (ns/day) (hour/ns) -44: Performance: 117.164 0.205 +44: Performance: 42.289 0.568 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (49 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (103 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -28787,7 +28822,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28824,10 +28859,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 198.3 +44: Time: 0.037 0.018 198.8 44: (ns/day) (hour/ns) -44: Performance: 211.013 0.114 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 79.694 0.301 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28850,10 +28885,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.017 0.009 197.2 +44: Time: 0.032 0.016 198.2 44: (ns/day) (hour/ns) -44: Performance: 90.722 0.265 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 48.503 0.495 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28876,13 +28911,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.018 0.009 198.2 +44: Time: 0.033 0.017 198.7 44: (ns/day) (hour/ns) -44: Performance: 86.341 0.278 +44: Performance: 46.325 0.518 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (96 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (167 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -28932,7 +28967,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28969,10 +29004,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.007 198.4 +44: Time: 0.038 0.019 198.9 44: (ns/day) (hour/ns) -44: Performance: 196.205 0.122 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 75.930 0.316 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -28995,10 +29030,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 197.3 +44: Time: 0.031 0.016 198.3 44: (ns/day) (hour/ns) -44: Performance: 111.030 0.216 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 49.333 0.486 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29021,14 +29056,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 198.3 +44: Time: 0.040 0.020 199.0 44: (ns/day) (hour/ns) -44: Performance: 114.645 0.209 +44: Performance: 39.055 0.615 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (70 ms) -44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (436 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (140 ms) +44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (512 ms total) 44: 44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -29072,7 +29107,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29105,10 +29140,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.031 0.016 199.2 44: (ns/day) (hour/ns) -44: Performance: 288.581 0.083 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 93.781 0.256 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29131,10 +29166,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.026 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 151.706 0.158 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 60.497 0.397 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29157,13 +29192,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.8 +44: Time: 0.023 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 142.605 0.168 +44: Performance: 67.650 0.355 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (55 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -29195,7 +29230,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29228,10 +29263,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 313.266 0.077 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 132.238 0.181 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29254,10 +29289,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.023 0.012 199.1 44: (ns/day) (hour/ns) -44: Performance: 165.992 0.145 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 66.476 0.361 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29280,13 +29315,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.025 0.013 199.0 44: (ns/day) (hour/ns) -44: Performance: 158.870 0.151 +44: Performance: 62.066 0.387 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (50 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -29326,7 +29361,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29359,10 +29394,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.026 0.013 199.0 44: (ns/day) (hour/ns) -44: Performance: 278.700 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 111.883 0.215 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29385,10 +29420,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.026 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 154.801 0.155 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 60.478 0.397 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29411,13 +29446,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.026 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 153.209 0.157 +44: Performance: 58.660 0.409 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (54 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -29459,7 +29494,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29492,10 +29527,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.3 +44: Time: 0.044 0.022 199.4 44: (ns/day) (hour/ns) -44: Performance: 274.409 0.087 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 67.173 0.357 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29518,10 +29553,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.2 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 163.972 0.146 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 71.259 0.337 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29544,13 +29579,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.4 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 142.326 0.169 +44: Performance: 68.833 0.349 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (59 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -29582,7 +29617,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29615,10 +29650,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 199.2 +44: Time: 0.027 0.014 199.6 44: (ns/day) (hour/ns) -44: Performance: 248.066 0.097 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 107.504 0.223 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29641,10 +29676,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 199.3 +44: Time: 0.024 0.012 199.3 44: (ns/day) (hour/ns) -44: Performance: 137.385 0.175 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 65.716 0.365 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29667,13 +29702,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 199.2 +44: Time: 0.024 0.012 199.5 44: (ns/day) (hour/ns) -44: Performance: 143.706 0.167 +44: Performance: 64.427 0.373 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (28 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (52 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -29705,7 +29740,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29738,10 +29773,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.5 +44: Time: 0.024 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 253.510 0.095 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 123.272 0.195 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29764,10 +29799,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.6 +44: Time: 0.025 0.012 199.1 44: (ns/day) (hour/ns) -44: Performance: 145.403 0.165 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 63.062 0.381 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29790,14 +29825,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.021 0.011 198.5 44: (ns/day) (hour/ns) -44: Performance: 149.304 0.161 +44: Performance: 72.851 0.329 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (28 ms) -44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (157 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (50 ms) +44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (320 ms total) 44: 44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -29841,7 +29876,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29873,10 +29908,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.3 +44: Time: 0.022 0.011 198.8 44: (ns/day) (hour/ns) -44: Performance: 262.836 0.091 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 134.107 0.179 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29898,10 +29933,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.023 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 159.164 0.151 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 66.875 0.359 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -29923,13 +29958,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.027 0.013 199.0 44: (ns/day) (hour/ns) -44: Performance: 157.640 0.152 +44: Performance: 57.834 0.415 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (51 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -29971,7 +30006,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30003,10 +30038,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.2 +44: Time: 0.026 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 280.556 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 112.946 0.212 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30028,10 +30063,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.025 0.013 198.9 44: (ns/day) (hour/ns) -44: Performance: 159.560 0.150 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 61.763 0.389 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30053,13 +30088,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.4 +44: Time: 0.023 0.012 198.8 44: (ns/day) (hour/ns) -44: Performance: 163.463 0.147 +44: Performance: 65.925 0.364 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (52 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -30101,7 +30136,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30133,10 +30168,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.2 +44: Time: 0.029 0.015 199.1 44: (ns/day) (hour/ns) -44: Performance: 265.605 0.090 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 99.133 0.242 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30158,10 +30193,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.025 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 149.666 0.160 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 62.548 0.384 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30183,13 +30218,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.023 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 157.186 0.153 +44: Performance: 67.949 0.353 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (53 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -30231,7 +30266,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30263,10 +30298,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 199.3 +44: Time: 0.023 0.012 199.4 44: (ns/day) (hour/ns) -44: Performance: 252.816 0.095 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 125.859 0.191 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30288,10 +30323,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.022 0.011 199.4 44: (ns/day) (hour/ns) -44: Performance: 152.375 0.158 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 70.745 0.339 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30313,14 +30348,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.026 0.013 199.4 44: (ns/day) (hour/ns) -44: Performance: 155.069 0.155 +44: Performance: 59.327 0.405 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (27 ms) -44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (106 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (50 ms) +44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (206 ms total) 44: 44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -30364,7 +30399,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30397,10 +30432,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.026 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 282.066 0.085 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 113.170 0.212 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30423,10 +30458,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.0 +44: Time: 0.022 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 151.466 0.158 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 71.358 0.336 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30449,13 +30484,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.025 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 151.346 0.159 +44: Performance: 61.754 0.389 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (52 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -30497,7 +30532,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30530,10 +30565,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.3 +44: Time: 0.027 0.014 198.9 44: (ns/day) (hour/ns) -44: Performance: 243.373 0.099 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 108.706 0.221 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30556,10 +30591,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.0 +44: Time: 0.067 0.033 199.6 44: (ns/day) (hour/ns) -44: Performance: 144.365 0.166 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 23.235 1.033 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30582,13 +30617,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.026 0.013 199.0 44: (ns/day) (hour/ns) -44: Performance: 152.775 0.157 +44: Performance: 59.562 0.403 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (28 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (75 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -30620,7 +30655,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30653,10 +30688,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.4 +44: Time: 0.029 0.014 199.1 44: (ns/day) (hour/ns) -44: Performance: 253.148 0.095 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 102.276 0.235 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30679,10 +30714,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.0 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 152.361 0.158 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 69.119 0.347 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30705,13 +30740,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.4 +44: Time: 0.037 0.019 199.3 44: (ns/day) (hour/ns) -44: Performance: 163.219 0.147 +44: Performance: 41.346 0.580 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (58 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -30743,7 +30778,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30776,10 +30811,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 197.8 +44: Time: 0.024 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 277.044 0.087 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 120.813 0.199 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30802,10 +30837,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 197.7 +44: Time: 0.023 0.012 198.7 44: (ns/day) (hour/ns) -44: Performance: 157.484 0.152 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 67.105 0.358 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30828,13 +30863,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.3 +44: Time: 0.023 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 141.965 0.169 +44: Performance: 66.965 0.358 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (51 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -30888,7 +30923,7 @@ 44: There were 3 notes 44: 44: There was 1 warning -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30921,10 +30956,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.6 +44: Time: 0.022 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 275.147 0.087 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 130.563 0.184 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30947,10 +30982,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.021 0.010 198.7 44: (ns/day) (hour/ns) -44: Performance: 158.283 0.152 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 74.578 0.322 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -30973,13 +31008,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.6 +44: Time: 0.022 0.011 198.7 44: (ns/day) (hour/ns) -44: Performance: 140.819 0.170 +44: Performance: 71.550 0.335 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (47 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -31019,7 +31054,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31052,10 +31087,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.024 0.012 198.7 44: (ns/day) (hour/ns) -44: Performance: 293.304 0.082 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 121.041 0.198 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31078,10 +31113,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.4 +44: Time: 0.021 0.011 198.7 44: (ns/day) (hour/ns) -44: Performance: 162.610 0.148 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 74.054 0.324 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31104,13 +31139,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.023 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 157.822 0.152 +44: Performance: 66.700 0.360 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (49 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -31152,7 +31187,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31185,10 +31220,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.4 +44: Time: 0.026 0.013 198.9 44: (ns/day) (hour/ns) -44: Performance: 255.447 0.094 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 113.246 0.212 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31211,10 +31246,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.6 +44: Time: 0.024 0.012 198.9 44: (ns/day) (hour/ns) -44: Performance: 141.718 0.169 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 65.633 0.366 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31237,13 +31272,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.6 +44: Time: 0.025 0.013 198.9 44: (ns/day) (hour/ns) -44: Performance: 143.279 0.168 +44: Performance: 60.741 0.395 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (53 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 @@ -31277,7 +31312,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31310,10 +31345,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.7 +44: Time: 0.025 0.012 198.9 44: (ns/day) (hour/ns) -44: Performance: 256.522 0.094 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 117.998 0.203 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31336,10 +31371,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.3 +44: Time: 0.024 0.012 198.9 44: (ns/day) (hour/ns) -44: Performance: 168.047 0.143 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 64.487 0.372 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31362,13 +31397,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.023 0.012 198.8 44: (ns/day) (hour/ns) -44: Performance: 158.141 0.152 +44: Performance: 65.860 0.364 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (51 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -31400,7 +31435,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31433,10 +31468,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 199.3 +44: Time: 0.024 0.012 199.5 44: (ns/day) (hour/ns) -44: Performance: 261.986 0.092 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 120.933 0.198 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31459,10 +31494,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.020 0.010 199.4 44: (ns/day) (hour/ns) -44: Performance: 157.116 0.153 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 76.710 0.313 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31485,18 +31520,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.023 0.011 199.4 44: (ns/day) (hour/ns) -44: Performance: 150.835 0.159 +44: Performance: 68.579 0.350 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (48 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (0 ms) -44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (239 ms total) +44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (484 ms total) 44: 44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact 44: [ RUN ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -31530,7 +31565,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31563,10 +31598,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.7 +44: Time: 0.027 0.014 198.9 44: (ns/day) (hour/ns) -44: Performance: 245.468 0.098 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 108.546 0.221 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31589,10 +31624,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.6 +44: Time: 0.026 0.013 199.0 44: (ns/day) (hour/ns) -44: Performance: 135.038 0.178 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 60.006 0.400 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31615,18 +31650,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.025 0.013 198.9 44: (ns/day) (hour/ns) -44: Performance: 151.265 0.159 +44: Performance: 61.459 0.391 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (27 ms) -44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (27 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (54 ms) +44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (54 ms total) 44: 44: [----------] 3 tests from Checking/InitialConstraintsTest 44: [ RUN ] Checking/InitialConstraintsTest.Works/0 -44: Setting the LD random seed to -813896213 +44: Setting the LD random seed to -27346958 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31644,7 +31679,7 @@ 44: 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31673,13 +31708,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.4 +44: Time: 0.016 0.008 198.0 44: (ns/day) (hour/ns) -44: Performance: 50.350 0.477 +44: Performance: 20.956 1.145 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (15 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/1 -44: Setting the LD random seed to -35144017 +44: Setting the LD random seed to -1477115958 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31697,7 +31732,7 @@ 44: 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31726,18 +31761,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.004 198.9 +44: Time: 0.017 0.008 199.1 44: (ns/day) (hour/ns) -44: Performance: 48.332 0.497 +44: Performance: 20.809 1.153 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (8 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (16 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 44: Integrator method md-vv-avek is implemented primarily for validation 44: purposes; for molecular dynamics, you should probably be using md or md-vv 44: -44: Setting the LD random seed to -1090990108 +44: Setting the LD random seed to -355271298 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31755,7 +31790,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -31784,17 +31819,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.004 197.6 +44: Time: 0.016 0.008 198.0 44: (ns/day) (hour/ns) -44: Performance: 46.383 0.517 +44: Performance: 21.659 1.108 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (8 ms) -44: [----------] 3 tests from Checking/InitialConstraintsTest (25 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (15 ms) +44: [----------] 3 tests from Checking/InitialConstraintsTest (46 ms total) 44: 44: [----------] Global test environment tear-down -44: [==========] 51 tests from 9 test cases ran. (1562 ms total) +44: [==========] 51 tests from 9 test cases ran. (2764 ms total) 44: [ PASSED ] 51 tests. -44/54 Test #44: MdrunIOTests ........................ Passed 1.57 sec +44/54 Test #44: MdrunIOTests ........................ Passed 2.78 sec test 45 Start 45: MdrunTests @@ -31809,7 +31844,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -72486977 +45: Setting the LD random seed to -270674437 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -31834,7 +31869,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -31863,11 +31898,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.040 0.020 199.5 +45: Time: 0.051 0.026 199.2 45: (ns/day) (hour/ns) -45: Performance: 1745.201 0.014 -45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (70 ms) -45: [----------] 1 test from DispersionCorrectionTest (70 ms total) +45: Performance: 1361.572 0.018 +45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (75 ms) +45: [----------] 1 test from DispersionCorrectionTest (75 ms total) 45: 45: [----------] 1 test from OriresTest 45: [ RUN ] OriresTest.OriresCanRun @@ -31876,7 +31911,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -1354828867 +45: Setting the LD random seed to -76546561 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -31891,7 +31926,7 @@ 45: 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -31923,15 +31958,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.134 0.067 199.8 +45: Time: 0.025 0.013 198.5 45: (ns/day) (hour/ns) -45: Performance: 28.405 0.845 -45: [ OK ] OriresTest.OriresCanRun (307 ms) -45: [----------] 1 test from OriresTest (307 ms total) +45: Performance: 149.411 0.161 +45: [ OK ] OriresTest.OriresCanRun (453 ms) +45: [----------] 1 test from OriresTest (453 ms total) 45: 45: [----------] 3 tests from PmeTest 45: [ RUN ] PmeTest.ReproducesEnergies -45: Setting the LD random seed to -159385634 +45: Setting the LD random seed to 2132792286 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31951,7 +31986,7 @@ 45: 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -31980,11 +32015,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.026 0.013 199.3 +45: Time: 0.045 0.023 199.2 45: (ns/day) (hour/ns) -45: Performance: 138.226 0.174 +45: Performance: 80.434 0.298 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32006,11 +32041,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.025 0.012 199.2 +45: Time: 0.043 0.022 199.1 45: (ns/day) (hour/ns) -45: Performance: 146.403 0.164 +45: Performance: 83.048 0.289 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32032,18 +32067,18 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.024 0.012 199.2 +45: Time: 0.046 0.023 199.3 45: (ns/day) (hour/ns) -45: Performance: 147.978 0.162 +45: Performance: 79.237 0.303 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (207 ms) +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (310 ms) 45: [ RUN ] PmeTest.ScalesTheBox 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1544520057 +45: Setting the LD random seed to -279091041 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -32063,7 +32098,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32083,9 +32118,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 185.8 +45: Time: 0.002 0.001 187.1 45: (ns/day) (hour/ns) -45: Performance: 153.640 0.156 +45: Performance: 82.966 0.289 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -32094,14 +32129,14 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBox (10 ms) +45: [ OK ] PmeTest.ScalesTheBox (15 ms) 45: [ RUN ] PmeTest.ScalesTheBoxWithWalls 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 2130115407 +45: Setting the LD random seed to -1073753362 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -32122,7 +32157,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32142,9 +32177,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 192.5 +45: Time: 0.005 0.003 193.8 45: (ns/day) (hour/ns) -45: Performance: 53.253 0.451 +45: Performance: 30.982 0.775 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -32153,8 +32188,8 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBoxWithWalls (548 ms) -45: [----------] 3 tests from PmeTest (765 ms total) +45: [ OK ] PmeTest.ScalesTheBoxWithWalls (768 ms) +45: [----------] 3 tests from PmeTest (1093 ms total) 45: 45: [----------] 1 test from CompelTest 45: [ RUN ] CompelTest.SwapCanRun @@ -32163,7 +32198,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -367649 +45: Setting the LD random seed to -276827192 45: Generated 330891 of the 330891 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 330891 of the 330891 1-4 parameter combinations @@ -32194,7 +32229,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32234,10 +32269,10 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.237 0.119 199.9 +45: Time: 0.368 0.184 199.9 45: (ns/day) (hour/ns) -45: Performance: 10.917 2.198 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 7.041 3.409 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32268,11 +32303,11 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.182 0.091 199.8 +45: Time: 0.279 0.139 199.8 45: (ns/day) (hour/ns) -45: Performance: 14.236 1.686 -45: [ OK ] CompelTest.SwapCanRun (696 ms) -45: [----------] 1 test from CompelTest (696 ms total) +45: Performance: 9.291 2.583 +45: [ OK ] CompelTest.SwapCanRun (1134 ms) +45: [----------] 1 test from CompelTest (1134 ms total) 45: 45: [----------] 6 tests from BondedInteractionsTest 45: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -32281,7 +32316,7 @@ 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1346113541 +45: Setting the LD random seed to 2125453947 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32301,7 +32336,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32326,18 +32361,18 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 186.7 +45: Time: 0.001 0.000 186.4 45: (ns/day) (hour/ns) -45: Performance: 402.076 0.060 +45: Performance: 297.591 0.081 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalBondWorks (5 ms) +45: [ OK ] BondedInteractionsTest.NormalBondWorks (8 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1174405255 +45: Setting the LD random seed to 2008961214 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32357,7 +32392,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32382,18 +32417,18 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.2 +45: Time: 0.001 0.000 186.1 45: (ns/day) (hour/ns) -45: Performance: 444.040 0.054 +45: Performance: 303.744 0.079 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (5 ms) +45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.NormalAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1157964381 +45: Setting the LD random seed to -1650459141 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32413,7 +32448,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32434,22 +32469,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 16 % of the run time was spent in pair search, +45: NOTE: 14 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.3 +45: Time: 0.000 0.000 185.4 45: (ns/day) (hour/ns) -45: Performance: 456.890 0.053 +45: Performance: 344.041 0.070 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalAngleWorks (5 ms) +45: [ OK ] BondedInteractionsTest.NormalAngleWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -805310514 +45: Setting the LD random seed to -334574593 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32469,7 +32504,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32490,22 +32525,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 13 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.4 +45: Time: 0.001 0.000 186.8 45: (ns/day) (hour/ns) -45: Performance: 457.936 0.052 +45: Performance: 307.927 0.078 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (5 ms) +45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1087652165 +45: Setting the LD random seed to 2146827703 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32525,7 +32560,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32546,22 +32581,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 14 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.3 +45: Time: 0.000 0.000 185.5 45: (ns/day) (hour/ns) -45: Performance: 461.356 0.052 +45: Performance: 357.005 0.067 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (4 ms) +45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -151441932 +45: Setting the LD random seed to -642293771 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32581,7 +32616,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -32602,24 +32637,24 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 16 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.4 +45: Time: 0.001 0.000 183.3 45: (ns/day) (hour/ns) -45: Performance: 451.593 0.053 +45: Performance: 308.410 0.078 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (5 ms) -45: [----------] 6 tests from BondedInteractionsTest (29 ms total) +45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (8 ms) +45: [----------] 6 tests from BondedInteractionsTest (42 ms total) 45: 45: [----------] Global test environment tear-down -45: [==========] 12 tests from 5 test cases ran. (1868 ms total) +45: [==========] 12 tests from 5 test cases ran. (2798 ms total) 45: [ PASSED ] 12 tests. 45: 45: YOU HAVE 12 DISABLED TESTS 45: -45/54 Test #45: MdrunTests .......................... Passed 1.88 sec +45/54 Test #45: MdrunTests .......................... Passed 2.82 sec test 46 Start 46: MdrunNonIntegratorTests @@ -32639,9 +32674,9 @@ 46: 46: Coulomb LJ comb. SIMD Mcycles Mcycles/it. pairs/cycle 46: total useful -46: Ewald all geom. 4xM 12.015 12.0146 0.0991 0.0524 -46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (18 ms) -46: [----------] 1 test from NonbondedBenchTest (18 ms total) +46: Ewald all geom. 4xM 22.729 22.7295 0.0524 0.0277 +46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (27 ms) +46: [----------] 1 test from NonbondedBenchTest (27 ms total) 46: 46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 @@ -32669,7 +32704,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -32695,12 +32730,12 @@ 46: writing lowest energy coordinates. 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -4.7990906e+01 -46: Maximum force = 1.8629601e+02 on atom 13 -46: Norm of force = 8.7721765e+01 +46: Potential Energy = -4.7990971e+01 +46: Maximum force = 1.8629771e+02 on atom 13 +46: Norm of force = 8.7721891e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (361 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (557 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -32726,7 +32761,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -32755,12 +32790,12 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -5.5862068e+01 -46: Maximum force = 4.2728271e+02 on atom 13 -46: Norm of force = 1.8453265e+02 +46: Potential Energy = -5.5862167e+01 +46: Maximum force = 4.2727719e+02 on atom 13 +46: Norm of force = 1.8453045e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (351 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (636 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -32786,7 +32821,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -32812,13 +32847,13 @@ 46: writing lowest energy coordinates. 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 3.1937726e+02 -46: Maximum force = 9.9988652e+03 on atom 9 +46: Potential Energy = 3.1937720e+02 +46: Maximum force = 9.9988643e+03 on atom 9 46: Norm of force = 4.6166996e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (91 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (180 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -32848,7 +32883,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -32877,13 +32912,13 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 1.5174402e+02 -46: Maximum force = 7.4208887e+03 on atom 9 -46: Norm of force = 3.5693020e+03 +46: Potential Energy = 1.5174451e+02 +46: Maximum force = 7.4208896e+03 on atom 9 +46: Norm of force = 3.5693008e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (90 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (178 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -32919,7 +32954,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -32945,13 +32980,13 @@ 46: writing lowest energy coordinates. 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -1.5698438e+02 -46: Maximum force = 4.5703687e+02 on atom 17 -46: Norm of force = 1.8327465e+02 +46: Potential Energy = -1.5698444e+02 +46: Maximum force = 4.5695361e+02 on atom 17 +46: Norm of force = 1.8325840e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (13 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (24 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -32991,7 +33026,7 @@ 46: 46: 46: There were 5 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33010,8 +33045,8 @@ 46: Polak-Ribiere Conjugate Gradients: 46: Tolerance (Fmax) = 1.00000e+01 46: Number of steps = 4 -46: F-max = 1.06799e+03 on atom 28 -46: F-Norm = 4.26915e+02 +46: F-max = 1.06802e+03 on atom 28 +46: F-Norm = 4.26923e+02 46: 46: 46: Energy minimization reached the maximum number of steps before the forces @@ -33020,14 +33055,14 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -1.6941168e+02 -46: Maximum force = 2.1832962e+02 on atom 17 -46: Norm of force = 7.9217751e+01 +46: Potential Energy = -1.6941089e+02 +46: Maximum force = 2.1826707e+02 on atom 17 +46: Norm of force = 7.9203357e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (14 ms) -46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (920 ms total) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (22 ms) +46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1598 ms total) 46: 46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -33047,7 +33082,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33075,7 +33110,7 @@ 46: Norm of force = 1.6383933e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (5 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -33093,7 +33128,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33124,7 +33159,7 @@ 46: Norm of force = 1.0525324e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (5 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -33148,7 +33183,7 @@ 46: There were 2 notes 46: 46: There was 1 warning -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33183,7 +33218,7 @@ 46: Norm of force = 1.0525324e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (5 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (7 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -33209,7 +33244,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33240,7 +33275,7 @@ 46: Norm of force = 4.6227531e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (92 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (184 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -33266,7 +33301,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33295,12 +33330,12 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 1.5625812e+02 +46: Potential Energy = 1.5625809e+02 46: Maximum force = 7.5017837e+03 on atom 9 46: Norm of force = 3.6139050e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (97 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (186 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -33332,7 +33367,7 @@ 46: There were 3 notes 46: 46: There was 1 warning -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33365,13 +33400,13 @@ 46: writing lowest energy coordinates. 46: 46: Low-Memory BFGS Minimizer did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 5.6111584e+02 +46: Potential Energy = 5.6111578e+02 46: Maximum force = 1.2685405e+04 on atom 10 46: Norm of force = 6.0643579e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (94 ms) -46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (299 ms total) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (176 ms) +46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (565 ms total) 46: 46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -33395,7 +33430,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33422,10 +33457,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 198.6 +46: Time: 0.018 0.009 198.5 46: (ns/day) (hour/ns) -46: Performance: 293.827 0.082 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 166.282 0.144 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33446,18 +33481,18 @@ 46: trr version: GMX_trn_file (single precision) 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 21 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.8 +46: Time: 0.002 0.001 194.2 46: (ns/day) (hour/ns) -46: Performance: 2984.139 0.008 +46: Performance: 1866.743 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (12 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (21 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp]: @@ -33479,7 +33514,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33506,10 +33541,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.008 0.004 199.2 +46: Time: 0.017 0.008 199.4 46: (ns/day) (hour/ns) -46: Performance: 357.966 0.067 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 177.046 0.136 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33529,18 +33564,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 21 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 194.0 +46: Time: 0.001 0.001 194.3 46: (ns/day) (hour/ns) -46: Performance: 3028.985 0.008 +46: Performance: 2303.048 0.010 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (10 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (18 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp]: @@ -33557,7 +33592,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33585,10 +33620,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.008 0.004 198.2 +46: Time: 0.017 0.009 198.8 46: (ns/day) (hour/ns) -46: Performance: 376.811 0.064 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 168.890 0.142 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33609,18 +33644,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 21 % of the run time was spent in pair search, +46: NOTE: 18 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.9 +46: Time: 0.001 0.001 194.2 46: (ns/day) (hour/ns) -46: Performance: 3023.088 0.008 +46: Performance: 2476.388 0.010 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (11 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (18 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp]: @@ -33637,7 +33672,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33665,10 +33700,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.009 0.005 198.5 +46: Time: 0.017 0.009 198.4 46: (ns/day) (hour/ns) -46: Performance: 321.038 0.075 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 168.802 0.142 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33689,18 +33724,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 21 % of the run time was spent in pair search, +46: NOTE: 18 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 194.0 +46: Time: 0.002 0.001 194.4 46: (ns/day) (hour/ns) -46: Performance: 3018.577 0.008 +46: Performance: 1900.890 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (11 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (20 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp]: @@ -33730,7 +33765,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33757,10 +33792,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.009 0.004 198.2 +46: Time: 0.016 0.008 197.8 46: (ns/day) (hour/ns) -46: Performance: 329.023 0.073 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 177.009 0.136 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33780,18 +33815,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 17 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.8 +46: Time: 0.001 0.001 194.5 46: (ns/day) (hour/ns) -46: Performance: 2952.972 0.008 +46: Performance: 1924.141 0.012 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (341 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (633 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp]: @@ -33821,7 +33856,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33848,10 +33883,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 199.2 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 300.726 0.080 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 61.772 0.389 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33871,18 +33906,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.5 +46: Time: 0.001 0.001 193.9 46: (ns/day) (hour/ns) -46: Performance: 3131.655 0.008 +46: Performance: 2249.884 0.011 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (337 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (652 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp]: @@ -33907,7 +33942,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33935,10 +33970,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.009 0.005 198.3 +46: Time: 0.017 0.008 198.3 46: (ns/day) (hour/ns) -46: Performance: 312.413 0.077 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 173.811 0.138 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -33959,18 +33994,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 20 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.2 +46: Time: 0.002 0.001 194.0 46: (ns/day) (hour/ns) -46: Performance: 2728.351 0.009 +46: Performance: 1746.401 0.014 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (333 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (645 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp]: @@ -33995,7 +34030,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34023,10 +34058,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.141 0.071 199.9 +46: Time: 0.019 0.010 198.2 46: (ns/day) (hour/ns) -46: Performance: 20.749 1.157 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 154.306 0.156 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34047,18 +34082,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.7 +46: Time: 0.002 0.001 194.3 46: (ns/day) (hour/ns) -46: Performance: 2956.957 0.008 +46: Performance: 1680.157 0.014 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (398 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (629 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp]: @@ -34104,7 +34139,7 @@ 46: 46: 46: There were 6 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34132,10 +34167,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.0 +46: Time: 0.027 0.014 198.4 46: (ns/day) (hour/ns) -46: Performance: 266.569 0.090 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 105.981 0.226 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34155,18 +34190,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.3 +46: Time: 0.003 0.001 195.1 46: (ns/day) (hour/ns) -46: Performance: 1727.846 0.014 +46: Performance: 1003.084 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (24 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (47 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp]: @@ -34212,7 +34247,7 @@ 46: 46: 46: There were 6 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34240,10 +34275,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.1 +46: Time: 0.071 0.036 199.4 46: (ns/day) (hour/ns) -46: Performance: 257.701 0.093 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 41.154 0.583 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34263,18 +34298,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.5 +46: Time: 0.002 0.001 195.3 46: (ns/day) (hour/ns) -46: Performance: 1681.062 0.014 +46: Performance: 1241.030 0.019 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (23 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (69 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp]: @@ -34315,7 +34350,7 @@ 46: 46: 46: There were 5 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34344,10 +34379,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.2 +46: Time: 0.020 0.010 198.3 46: (ns/day) (hour/ns) -46: Performance: 262.721 0.091 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 147.827 0.162 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34372,14 +34407,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.5 +46: Time: 0.003 0.001 195.5 46: (ns/day) (hour/ns) -46: Performance: 1717.434 0.014 +46: Performance: 1145.445 0.021 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (42 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (75 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp]: @@ -34420,7 +34455,7 @@ 46: 46: 46: There were 5 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34449,10 +34484,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.007 198.6 +46: Time: 0.021 0.010 197.3 46: (ns/day) (hour/ns) -46: Performance: 216.707 0.111 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 140.178 0.171 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34473,19 +34508,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.7 +46: Time: 0.002 0.001 195.3 46: (ns/day) (hour/ns) -46: Performance: 1672.804 0.014 +46: Performance: 1164.415 0.021 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (37 ms) -46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (1579 ms total) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (64 ms) +46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (2891 ms total) 46: 46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -34518,7 +34553,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34547,10 +34582,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.6 +46: Time: 0.027 0.013 197.6 46: (ns/day) (hour/ns) -46: Performance: 293.599 0.082 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 109.235 0.220 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34570,18 +34605,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 189.8 46: (ns/day) (hour/ns) -46: Performance: 1361.449 0.018 +46: Performance: 889.366 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (21 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (42 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp]: @@ -34612,7 +34647,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34641,10 +34676,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.8 +46: Time: 0.027 0.014 198.6 46: (ns/day) (hour/ns) -46: Performance: 280.788 0.085 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 106.353 0.226 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34668,14 +34703,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.6 +46: Time: 0.003 0.001 188.4 46: (ns/day) (hour/ns) -46: Performance: 1379.513 0.017 +46: Performance: 982.464 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (41 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp]: @@ -34706,7 +34741,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34735,10 +34770,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 198.0 +46: Time: 0.025 0.012 198.4 46: (ns/day) (hour/ns) -46: Performance: 248.314 0.097 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 117.618 0.204 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34758,18 +34793,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.4 +46: Time: 0.003 0.002 181.1 46: (ns/day) (hour/ns) -46: Performance: 1378.998 0.017 +46: Performance: 934.646 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (42 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp]: @@ -34800,7 +34835,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34829,10 +34864,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.8 +46: Time: 0.024 0.012 197.3 46: (ns/day) (hour/ns) -46: Performance: 276.973 0.087 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 118.724 0.202 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34852,18 +34887,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.5 +46: Time: 0.003 0.002 189.4 46: (ns/day) (hour/ns) -46: Performance: 1380.499 0.017 +46: Performance: 908.720 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (42 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp]: @@ -34894,7 +34929,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34923,10 +34958,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 198.1 +46: Time: 0.024 0.012 198.1 46: (ns/day) (hour/ns) -46: Performance: 238.726 0.101 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 123.024 0.195 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -34946,18 +34981,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.6 +46: Time: 0.003 0.002 189.8 46: (ns/day) (hour/ns) -46: Performance: 1378.355 0.017 +46: Performance: 806.583 0.030 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (23 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (40 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp]: @@ -34988,7 +35023,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35017,10 +35052,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.7 +46: Time: 0.023 0.012 198.3 46: (ns/day) (hour/ns) -46: Performance: 287.763 0.083 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 127.710 0.188 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35044,14 +35079,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.9 +46: Time: 0.003 0.002 188.0 46: (ns/day) (hour/ns) -46: Performance: 1293.786 0.019 +46: Performance: 950.617 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (40 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp]: @@ -35082,7 +35117,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35111,10 +35146,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.7 +46: Time: 0.022 0.011 197.6 46: (ns/day) (hour/ns) -46: Performance: 288.245 0.083 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 129.721 0.185 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35134,18 +35169,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.6 +46: Time: 0.003 0.002 188.8 46: (ns/day) (hour/ns) -46: Performance: 1375.148 0.017 +46: Performance: 950.721 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (39 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp]: @@ -35176,7 +35211,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35205,10 +35240,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.009 0.005 197.5 +46: Time: 0.025 0.012 197.9 46: (ns/day) (hour/ns) -46: Performance: 310.622 0.077 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 117.817 0.204 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35228,18 +35263,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 190.2 46: (ns/day) (hour/ns) -46: Performance: 1375.017 0.017 +46: Performance: 941.579 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (21 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (39 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp]: @@ -35270,7 +35305,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35299,10 +35334,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.007 198.2 +46: Time: 0.024 0.012 198.4 46: (ns/day) (hour/ns) -46: Performance: 218.782 0.110 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 121.448 0.198 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35322,18 +35357,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.4 +46: Time: 0.003 0.001 188.6 46: (ns/day) (hour/ns) -46: Performance: 1386.120 0.017 +46: Performance: 993.357 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (23 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (40 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp]: @@ -35364,7 +35399,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35393,10 +35428,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.0 +46: Time: 0.033 0.017 198.5 46: (ns/day) (hour/ns) -46: Performance: 255.060 0.094 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 88.313 0.272 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35416,18 +35451,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.3 +46: Time: 0.003 0.002 190.0 46: (ns/day) (hour/ns) -46: Performance: 1383.543 0.017 +46: Performance: 864.807 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (21 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (44 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp]: @@ -35458,7 +35493,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35487,10 +35522,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 197.8 +46: Time: 0.023 0.012 198.2 46: (ns/day) (hour/ns) -46: Performance: 272.193 0.088 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 127.497 0.188 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35510,18 +35545,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.6 +46: Time: 0.003 0.002 182.7 46: (ns/day) (hour/ns) -46: Performance: 1386.933 0.017 +46: Performance: 956.437 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (39 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp]: @@ -35552,7 +35587,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35581,10 +35616,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 199.2 +46: Time: 0.030 0.015 198.8 46: (ns/day) (hour/ns) -46: Performance: 249.242 0.096 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 95.818 0.250 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35608,14 +35643,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.8 +46: Time: 0.003 0.002 189.7 46: (ns/day) (hour/ns) -46: Performance: 1378.430 0.017 +46: Performance: 884.232 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (42 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp]: @@ -35646,7 +35681,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35675,10 +35710,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 199.2 +46: Time: 0.029 0.015 199.3 46: (ns/day) (hour/ns) -46: Performance: 258.156 0.093 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 100.208 0.240 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35698,18 +35733,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 188.9 +46: Time: 0.003 0.002 189.5 46: (ns/day) (hour/ns) -46: Performance: 1365.254 0.018 +46: Performance: 905.710 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (43 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp]: @@ -35740,7 +35775,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35769,10 +35804,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.014 0.007 199.4 +46: Time: 0.077 0.039 199.5 46: (ns/day) (hour/ns) -46: Performance: 213.767 0.112 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 38.035 0.631 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35792,18 +35827,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 190.5 46: (ns/day) (hour/ns) -46: Performance: 1315.249 0.018 +46: Performance: 815.935 0.029 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (23 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp]: @@ -35834,7 +35869,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35863,10 +35898,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 199.3 +46: Time: 0.028 0.014 198.7 46: (ns/day) (hour/ns) -46: Performance: 248.062 0.097 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 105.713 0.227 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35886,18 +35921,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.5 +46: Time: 0.003 0.001 188.5 46: (ns/day) (hour/ns) -46: Performance: 1388.968 0.017 +46: Performance: 1003.070 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (41 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp]: @@ -35928,7 +35963,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35957,10 +35992,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 199.3 +46: Time: 0.023 0.012 199.1 46: (ns/day) (hour/ns) -46: Performance: 258.780 0.093 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 126.683 0.189 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -35980,18 +36015,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 189.8 46: (ns/day) (hour/ns) -46: Performance: 1340.433 0.018 +46: Performance: 962.012 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (21 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (38 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp]: @@ -36022,7 +36057,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36051,10 +36086,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 199.2 +46: Time: 0.068 0.034 199.7 46: (ns/day) (hour/ns) -46: Performance: 252.307 0.095 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 42.889 0.560 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36074,18 +36109,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.6 +46: Time: 0.003 0.002 187.4 46: (ns/day) (hour/ns) -46: Performance: 1385.470 0.017 +46: Performance: 915.447 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (65 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp]: @@ -36116,7 +36151,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36145,10 +36180,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 199.3 +46: Time: 0.022 0.011 199.1 46: (ns/day) (hour/ns) -46: Performance: 246.414 0.097 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 131.413 0.183 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36168,18 +36203,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.5 +46: Time: 0.003 0.002 189.8 46: (ns/day) (hour/ns) -46: Performance: 1367.460 0.018 +46: Performance: 946.902 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (23 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (38 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp]: @@ -36210,7 +36245,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36239,10 +36274,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 199.2 +46: Time: 0.022 0.011 199.0 46: (ns/day) (hour/ns) -46: Performance: 260.320 0.092 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 130.639 0.184 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36262,18 +36297,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.5 +46: Time: 0.003 0.002 181.9 46: (ns/day) (hour/ns) -46: Performance: 1360.311 0.018 +46: Performance: 957.315 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (40 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp]: @@ -36304,7 +36339,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36333,10 +36368,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 199.3 +46: Time: 0.024 0.012 199.1 46: (ns/day) (hour/ns) -46: Performance: 253.632 0.095 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 119.873 0.200 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36356,18 +36391,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 189.0 46: (ns/day) (hour/ns) -46: Performance: 1372.833 0.017 +46: Performance: 974.009 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (39 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp]: @@ -36398,7 +36433,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36427,10 +36462,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 199.2 +46: Time: 0.024 0.012 199.0 46: (ns/day) (hour/ns) -46: Performance: 272.959 0.088 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 122.499 0.196 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36450,18 +36485,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.5 +46: Time: 0.003 0.001 188.5 46: (ns/day) (hour/ns) -46: Performance: 1379.685 0.017 +46: Performance: 1013.200 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (22 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (40 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp]: @@ -36492,7 +36527,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36521,10 +36556,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 199.2 +46: Time: 0.025 0.013 199.1 46: (ns/day) (hour/ns) -46: Performance: 274.275 0.088 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 115.775 0.207 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36548,14 +36583,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.5 +46: Time: 0.003 0.001 188.8 46: (ns/day) (hour/ns) -46: Performance: 1347.483 0.018 +46: Performance: 1014.098 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (21 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (40 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp]: @@ -36581,7 +36616,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36611,10 +36646,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 197.6 +46: Time: 0.024 0.012 197.9 46: (ns/day) (hour/ns) -46: Performance: 275.980 0.087 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 123.198 0.195 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36635,18 +36670,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.8 +46: Time: 0.003 0.002 188.2 46: (ns/day) (hour/ns) -46: Performance: 1319.839 0.018 +46: Performance: 790.299 0.030 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (36 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (67 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp]: @@ -36672,7 +36707,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36702,10 +36737,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.5 +46: Time: 0.024 0.012 197.2 46: (ns/day) (hour/ns) -46: Performance: 282.688 0.085 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 121.827 0.197 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36726,18 +36761,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 188.2 46: (ns/day) (hour/ns) -46: Performance: 1345.068 0.018 +46: Performance: 960.054 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (35 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp]: @@ -36763,7 +36798,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36793,10 +36828,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.010 0.005 197.5 +46: Time: 0.038 0.019 198.7 46: (ns/day) (hour/ns) -46: Performance: 278.573 0.086 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 76.914 0.312 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36817,18 +36852,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 188.8 +46: Time: 0.003 0.002 187.6 46: (ns/day) (hour/ns) -46: Performance: 1317.298 0.018 +46: Performance: 951.975 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (36 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (73 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp]: @@ -36854,7 +36889,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36884,10 +36919,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 197.8 +46: Time: 0.026 0.013 198.2 46: (ns/day) (hour/ns) -46: Performance: 238.583 0.101 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 112.754 0.213 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36908,18 +36943,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 188.5 +46: Time: 0.003 0.002 189.2 46: (ns/day) (hour/ns) -46: Performance: 1282.283 0.019 +46: Performance: 913.991 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (37 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp]: @@ -36945,7 +36980,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36975,10 +37010,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 194.9 +46: Time: 0.025 0.013 198.1 46: (ns/day) (hour/ns) -46: Performance: 245.828 0.098 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 115.583 0.208 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -36999,18 +37034,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.6 +46: Time: 0.003 0.002 180.8 46: (ns/day) (hour/ns) -46: Performance: 1340.946 0.018 +46: Performance: 942.905 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (37 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp]: @@ -37036,7 +37071,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37066,10 +37101,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 197.7 +46: Time: 0.029 0.015 198.1 46: (ns/day) (hour/ns) -46: Performance: 241.528 0.099 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 98.771 0.243 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37090,18 +37125,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 188.7 46: (ns/day) (hour/ns) -46: Performance: 1336.182 0.018 +46: Performance: 921.966 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (37 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (69 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp]: @@ -37127,7 +37162,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37157,10 +37192,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.015 0.007 198.2 +46: Time: 0.031 0.016 198.7 46: (ns/day) (hour/ns) -46: Performance: 197.308 0.122 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 93.134 0.258 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37181,18 +37216,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.4 +46: Time: 0.003 0.002 188.2 46: (ns/day) (hour/ns) -46: Performance: 1344.048 0.018 +46: Performance: 802.869 0.030 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (39 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (70 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp]: @@ -37218,7 +37253,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37248,10 +37283,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 198.4 +46: Time: 0.070 0.035 199.3 46: (ns/day) (hour/ns) -46: Performance: 180.740 0.133 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 42.047 0.571 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37276,14 +37311,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 188.3 +46: Time: 0.003 0.002 188.7 46: (ns/day) (hour/ns) -46: Performance: 1320.853 0.018 +46: Performance: 954.587 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (39 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (90 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp]: @@ -37309,7 +37344,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37339,10 +37374,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.015 0.008 198.3 +46: Time: 0.032 0.016 198.0 46: (ns/day) (hour/ns) -46: Performance: 189.370 0.127 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 91.374 0.263 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37363,18 +37398,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.7 +46: Time: 0.003 0.002 188.8 46: (ns/day) (hour/ns) -46: Performance: 1328.396 0.018 +46: Performance: 844.739 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (38 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (71 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp]: @@ -37400,7 +37435,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37430,10 +37465,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.015 0.008 198.3 +46: Time: 0.039 0.020 198.9 46: (ns/day) (hour/ns) -46: Performance: 193.441 0.124 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 74.169 0.324 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37454,18 +37489,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.8 +46: Time: 0.003 0.002 187.1 46: (ns/day) (hour/ns) -46: Performance: 1335.279 0.018 +46: Performance: 800.980 0.030 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (38 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (74 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp]: @@ -37491,7 +37526,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37521,10 +37556,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.015 0.008 198.3 +46: Time: 0.039 0.020 198.8 46: (ns/day) (hour/ns) -46: Performance: 190.103 0.126 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 75.033 0.320 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -37545,24 +37580,24 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 189.8 +46: Time: 0.003 0.002 188.3 46: (ns/day) (hour/ns) -46: Performance: 1314.415 0.018 +46: Performance: 892.553 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (39 ms) -46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (897 ms total) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (75 ms) +46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (1729 ms total) 46: 46: [----------] Global test environment tear-down -46: [==========] 58 tests from 5 test cases ran. (3713 ms total) +46: [==========] 58 tests from 5 test cases ran. (6811 ms total) 46: [ PASSED ] 58 tests. -46/54 Test #46: MdrunNonIntegratorTests ............. Passed 3.73 sec +46/54 Test #46: MdrunNonIntegratorTests ............. Passed 6.83 sec test 47 Start 47: MdrunTpiTests @@ -37579,7 +37614,7 @@ 47: Excluding 2 bonded neighbours molecule type 'SOL' 47: Excluding 3 bonded neighbours molecule type 'methane' 47: Number of degrees of freedom in T-Coupling group System is 1308.00 -47: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +47: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 47: The current CPU can measure timings more accurately than the code in 47: mdrun-tpi-test was configured to use. This might affect your simulation 47: speed as accurate timings are needed for load-balancing. @@ -37601,7 +37636,7 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (361 ms) +47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (571 ms) 47: [ RUN ] Simple/TpiTest.ReproducesOutput/1 47: Ignoring obsolete mdp entry 'ns_type' 47: Generated 331705 of the 331705 non-bonded parameter combinations @@ -37610,7 +37645,7 @@ 47: Excluding 2 bonded neighbours molecule type 'SOL' 47: Excluding 3 bonded neighbours molecule type 'methane' 47: Number of degrees of freedom in T-Coupling group System is 1308.00 -47: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +47: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 47: The current CPU can measure timings more accurately than the code in 47: mdrun-tpi-test was configured to use. This might affect your simulation 47: speed as accurate timings are needed for load-balancing. @@ -37632,13 +37667,13 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (333 ms) -47: [----------] 2 tests from Simple/TpiTest (694 ms total) +47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (606 ms) +47: [----------] 2 tests from Simple/TpiTest (1177 ms total) 47: 47: [----------] Global test environment tear-down -47: [==========] 2 tests from 1 test case ran. (694 ms total) +47: [==========] 2 tests from 1 test case ran. (1178 ms total) 47: [ PASSED ] 2 tests. -47/54 Test #47: MdrunTpiTests ....................... Passed 0.70 sec +47/54 Test #47: MdrunTpiTests ....................... Passed 1.19 sec test 48 Start 48: MdrunMpiTests @@ -37653,7 +37688,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -49201 +48: Setting the LD random seed to -270798915 48: Generated 3 of the 3 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 3 of the 3 1-4 parameter combinations @@ -37672,7 +37707,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -37691,17 +37726,17 @@ 48: starting mdrun 'spc2' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 26 % of the run time was spent in domain decomposition, -48: 18 % of the run time was spent in pair search, +48: NOTE: 25 % of the run time was spent in domain decomposition, +48: 17 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 312.5 +48: Time: 0.001 0.000 294.2 48: (ns/day) (hour/ns) -48: Performance: 343.509 0.070 +48: Performance: 222.379 0.108 48: This run will generate roughly 0 Mb of data -48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (38 ms) -48: [----------] 1 test from DomainDecompositionSpecialCasesTest (38 ms total) +48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (30 ms) +48: [----------] 1 test from DomainDecompositionSpecialCasesTest (30 ms total) 48: 48: [----------] 4 tests from MimicTest 48: [ RUN ] MimicTest.OneQuantumMol @@ -37710,7 +37745,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1216450970 +48: Setting the LD random seed to -594177 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -37729,7 +37764,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -37750,24 +37785,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 22 % of the run time was spent in domain decomposition, -48: 13 % of the run time was spent in pair search, +48: NOTE: 21 % of the run time was spent in domain decomposition, +48: 12 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 380.3 +48: Time: 0.002 0.000 378.7 48: (ns/day) (hour/ns) -48: Performance: 305.252 0.079 +48: Performance: 175.242 0.137 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.OneQuantumMol (5 ms) +48: [ OK ] MimicTest.OneQuantumMol (9 ms) 48: [ RUN ] MimicTest.AllQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1212940553 +48: Setting the LD random seed to 2085664767 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -37786,7 +37821,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -37807,24 +37842,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 22 % of the run time was spent in domain decomposition, -48: 13 % of the run time was spent in pair search, +48: NOTE: 23 % of the run time was spent in domain decomposition, +48: 9 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 379.8 +48: Time: 0.002 0.001 381.3 48: (ns/day) (hour/ns) -48: Performance: 305.040 0.079 +48: Performance: 170.839 0.140 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.AllQuantumMol (5 ms) +48: [ OK ] MimicTest.AllQuantumMol (9 ms) 48: [ RUN ] MimicTest.TwoQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 1872222461 +48: Setting the LD random seed to -1073889295 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -37843,7 +37878,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -37864,24 +37899,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 23 % of the run time was spent in domain decomposition, -48: 13 % of the run time was spent in pair search, +48: NOTE: 21 % of the run time was spent in domain decomposition, +48: 10 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 380.1 +48: Time: 0.002 0.001 380.9 48: (ns/day) (hour/ns) -48: Performance: 315.933 0.076 +48: Performance: 171.365 0.140 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.TwoQuantumMol (5 ms) +48: [ OK ] MimicTest.TwoQuantumMol (9 ms) 48: [ RUN ] MimicTest.BondCuts 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 2145344223 +48: Setting the LD random seed to -7450773 48: Generated 2211 of the 2211 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 2211 of the 2211 1-4 parameter combinations @@ -37900,7 +37935,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -37922,21 +37957,21 @@ 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: 48: NOTE: 16 % of the run time was spent in domain decomposition, -48: 18 % of the run time was spent in pair search, +48: 15 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.000 387.6 +48: Time: 0.003 0.001 387.6 48: (ns/day) (hour/ns) -48: Performance: 194.534 0.123 +48: Performance: 116.599 0.206 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 48: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 48: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 48: Note that mdrun will redetermine rlist based on the actual pair-list setup 48: This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.BondCuts (14 ms) -48: [----------] 4 tests from MimicTest (29 ms total) +48: [ OK ] MimicTest.BondCuts (28 ms) +48: [----------] 4 tests from MimicTest (55 ms total) 48: 48: [----------] 1 test from MultiSimTerminationTest 48: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -37945,7 +37980,7 @@ 48: 48: [----------] 3 tests from PmeTest 48: [ RUN ] PmeTest.ReproducesEnergies -48: Setting the LD random seed to -269615682 +48: Setting the LD random seed to -135661829 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -37965,7 +38000,7 @@ 48: 48: 48: There were 2 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -37995,11 +38030,11 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.049 0.012 398.5 +48: Time: 0.205 0.051 399.4 48: (ns/day) (hour/ns) -48: Performance: 147.072 0.163 +48: Performance: 35.302 0.680 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38022,11 +38057,11 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.046 0.011 398.6 +48: Time: 0.091 0.023 398.3 48: (ns/day) (hour/ns) -48: Performance: 158.296 0.152 +48: Performance: 79.681 0.301 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38049,18 +38084,18 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.046 0.012 398.4 +48: Time: 0.089 0.022 398.3 48: (ns/day) (hour/ns) -48: Performance: 156.236 0.154 +48: Performance: 81.072 0.296 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (206 ms) +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (335 ms) 48: [ RUN ] PmeTest.ScalesTheBox 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 2092904255 +48: Setting the LD random seed to -1345716241 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -38080,7 +38115,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38101,9 +38136,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.001 370.5 +48: Time: 0.003 0.001 367.6 48: (ns/day) (hour/ns) -48: Performance: 166.671 0.144 +48: Performance: 110.812 0.217 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -38112,14 +38147,14 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBox (9 ms) +48: [ OK ] PmeTest.ScalesTheBox (15 ms) 48: [ RUN ] PmeTest.ScalesTheBoxWithWalls 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 1971058605 +48: Setting the LD random seed to -570557450 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -38140,7 +38175,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38161,9 +38196,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.006 0.002 384.1 +48: Time: 0.010 0.003 381.8 48: (ns/day) (hour/ns) -48: Performance: 53.753 0.446 +48: Performance: 33.520 0.716 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -38172,8 +38207,8 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBoxWithWalls (549 ms) -48: [----------] 3 tests from PmeTest (764 ms total) +48: [ OK ] PmeTest.ScalesTheBoxWithWalls (753 ms) +48: [----------] 3 tests from PmeTest (1103 ms total) 48: 48: [----------] 1 test from ReplicaExchangeTerminationTest 48: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -38206,7 +38241,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38232,12 +38267,12 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -4.7990990e+01 -48: Maximum force = 1.8629727e+02 on atom 13 -48: Norm of force = 8.7721930e+01 +48: Potential Energy = -4.7991066e+01 +48: Maximum force = 1.8629752e+02 on atom 13 +48: Norm of force = 8.7721970e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (336 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (563 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -38263,7 +38298,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38282,7 +38317,7 @@ 48: Polak-Ribiere Conjugate Gradients: 48: Tolerance (Fmax) = 1.00000e+01 48: Number of steps = 4 -48: F-max = 3.02330e+02 on atom 3 +48: F-max = 3.02331e+02 on atom 3 48: F-Norm = 1.18024e+02 48: 48: @@ -38292,12 +38327,12 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -5.5862217e+01 -48: Maximum force = 4.2727344e+02 on atom 13 +48: Potential Energy = -5.5862190e+01 +48: Maximum force = 4.2727307e+02 on atom 13 48: Norm of force = 1.8452956e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (335 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (565 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -38323,7 +38358,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38349,13 +38384,13 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = 3.1937726e+02 -48: Maximum force = 9.9988652e+03 on atom 9 +48: Potential Energy = 3.1937720e+02 +48: Maximum force = 9.9988643e+03 on atom 9 48: Norm of force = 4.6166996e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (92 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (169 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -38385,7 +38420,7 @@ 48: 48: 48: There were 4 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38414,13 +38449,13 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = 1.5174451e+02 -48: Maximum force = 7.4208892e+03 on atom 9 +48: Potential Energy = 1.5174445e+02 +48: Maximum force = 7.4208896e+03 on atom 9 48: Norm of force = 3.5693002e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (95 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (179 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -38456,7 +38491,7 @@ 48: 48: 48: There were 4 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38482,13 +38517,13 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -1.5698444e+02 -48: Maximum force = 4.5703690e+02 on atom 17 -48: Norm of force = 1.8327465e+02 +48: Potential Energy = -1.5698456e+02 +48: Maximum force = 4.5695364e+02 on atom 17 +48: Norm of force = 1.8325840e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (14 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (23 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -38528,7 +38563,7 @@ 48: 48: 48: There were 5 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38547,8 +38582,8 @@ 48: Polak-Ribiere Conjugate Gradients: 48: Tolerance (Fmax) = 1.00000e+01 48: Number of steps = 4 -48: F-max = 1.06799e+03 on atom 28 -48: F-Norm = 4.26915e+02 +48: F-max = 1.06802e+03 on atom 28 +48: F-Norm = 4.26923e+02 48: 48: 48: Energy minimization reached the maximum number of steps before the forces @@ -38557,14 +38592,14 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -1.6941162e+02 -48: Maximum force = 2.1832959e+02 on atom 17 -48: Norm of force = 7.9217746e+01 +48: Potential Energy = -1.6941095e+02 +48: Maximum force = 2.1826700e+02 on atom 17 +48: Norm of force = 7.9203346e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (14 ms) -48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (886 ms total) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (24 ms) +48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1525 ms total) 48: 48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -38584,7 +38619,7 @@ 48: Number of degrees of freedom in T-Coupling group System is 33.00 48: 48: There were 2 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38612,7 +38647,7 @@ 48: Norm of force = 1.6383933e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (5 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (7 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -38630,7 +38665,7 @@ 48: Number of degrees of freedom in T-Coupling group System is 33.00 48: 48: There were 2 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38661,7 +38696,7 @@ 48: Norm of force = 1.0525324e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (4 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (7 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -38686,7 +38721,7 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (3 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (4 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -38712,7 +38747,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38738,12 +38773,12 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = 3.1939673e+02 +48: Potential Energy = 3.1939670e+02 48: Maximum force = 9.9704219e+03 on atom 9 48: Norm of force = 4.6227534e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (95 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (177 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -38769,7 +38804,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -38803,7 +38838,7 @@ 48: Norm of force = 3.6139050e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (96 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (178 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -38836,16 +38871,16 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (92 ms) -48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (295 ms total) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (172 ms) +48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (545 ms total) 48: 48: [----------] Global test environment tear-down -48: [==========] 22 tests from 7 test cases ran. (2012 ms total) +48: [==========] 22 tests from 7 test cases ran. (3258 ms total) 48: [ PASSED ] 22 tests. 48: 48: YOU HAVE 4 DISABLED TESTS 48: -48/54 Test #48: MdrunMpiTests ....................... Passed 2.02 sec +48/54 Test #48: MdrunMpiTests ....................... Passed 3.28 sec test 49 Start 49: MdrunMpiCoordinationTestsOneRank @@ -38875,7 +38910,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -38899,9 +38934,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.016 0.016 99.6 49: (ns/day) (hour/ns) -49: Performance: 256.459 0.094 +49: Performance: 92.397 0.260 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -38922,7 +38957,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -38946,9 +38981,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.1 49: (ns/day) (hour/ns) -49: Performance: 319.531 0.075 +49: Performance: 142.299 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38971,7 +39006,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -38995,9 +39030,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.014 0.014 99.5 49: (ns/day) (hour/ns) -49: Performance: 338.577 0.071 +49: Performance: 106.843 0.225 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39020,7 +39055,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39044,9 +39079,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.012 0.012 99.4 49: (ns/day) (hour/ns) -49: Performance: 364.517 0.066 +49: Performance: 118.411 0.203 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -39069,7 +39104,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39093,9 +39128,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.013 0.013 99.4 49: (ns/day) (hour/ns) -49: Performance: 329.520 0.073 +49: Performance: 111.947 0.214 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -39118,7 +39153,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39142,13 +39177,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 313.624 0.077 +49: Performance: 135.248 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (79 ms) -49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (79 ms total) +49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (133 ms) +49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (133 ms total) 49: 49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -39172,7 +39207,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39196,9 +39231,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 360.996 0.066 +49: Performance: 133.835 0.179 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39219,7 +39254,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39243,9 +39278,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.013 0.013 99.4 49: (ns/day) (hour/ns) -49: Performance: 308.858 0.078 +49: Performance: 116.298 0.206 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39268,7 +39303,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39292,9 +39327,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 310.556 0.077 +49: Performance: 99.906 0.240 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39317,7 +39352,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39341,9 +39376,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.013 0.013 99.6 49: (ns/day) (hour/ns) -49: Performance: 342.944 0.070 +49: Performance: 108.805 0.221 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -39366,7 +39401,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39390,9 +39425,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 317.758 0.076 +49: Performance: 94.799 0.253 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -39415,7 +39450,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39439,12 +39474,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 339.455 0.071 +49: Performance: 97.481 0.246 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (50 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (123 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -39466,7 +39501,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39490,9 +39525,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 337.648 0.071 +49: Performance: 150.892 0.159 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39513,7 +39548,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39537,9 +39572,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 290.365 0.083 +49: Performance: 133.400 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39562,7 +39597,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39586,9 +39621,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.013 0.014 99.5 49: (ns/day) (hour/ns) -49: Performance: 358.292 0.067 +49: Performance: 108.577 0.221 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39611,7 +39646,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39635,9 +39670,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 332.799 0.072 +49: Performance: 136.749 0.176 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -39660,7 +39695,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39684,9 +39719,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.013 0.013 99.6 49: (ns/day) (hour/ns) -49: Performance: 310.420 0.077 +49: Performance: 111.159 0.216 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -39709,7 +39744,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39733,12 +39768,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 335.738 0.071 +49: Performance: 139.289 0.172 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (51 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (105 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -39760,7 +39795,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39784,9 +39819,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 345.640 0.069 +49: Performance: 96.004 0.250 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39807,7 +39842,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39831,9 +39866,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.016 0.016 99.6 49: (ns/day) (hour/ns) -49: Performance: 340.887 0.070 +49: Performance: 92.544 0.259 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39856,7 +39891,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39880,9 +39915,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 318.397 0.075 +49: Performance: 135.478 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39905,7 +39940,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39929,9 +39964,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 312.830 0.077 +49: Performance: 118.962 0.202 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -39954,7 +39989,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -39978,9 +40013,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 287.191 0.084 +49: Performance: 117.736 0.204 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -40003,7 +40038,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40027,12 +40062,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.025 0.026 99.7 49: (ns/day) (hour/ns) -49: Performance: 328.112 0.073 +49: Performance: 57.567 0.417 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (130 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -40049,7 +40084,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40074,9 +40109,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.014 0.014 99.6 49: (ns/day) (hour/ns) -49: Performance: 340.315 0.071 +49: Performance: 103.548 0.232 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40092,7 +40127,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40117,9 +40152,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.3 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 325.725 0.074 +49: Performance: 118.260 0.203 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40137,7 +40172,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40162,9 +40197,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 319.616 0.075 +49: Performance: 122.641 0.196 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40182,7 +40217,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40207,9 +40242,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 334.891 0.072 +49: Performance: 124.940 0.192 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -40227,7 +40262,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40252,9 +40287,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 346.713 0.069 +49: Performance: 134.345 0.179 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -40272,7 +40307,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40297,12 +40332,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 318.050 0.075 +49: Performance: 133.778 0.179 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (51 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (109 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -40319,7 +40354,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40344,9 +40379,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.1 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 356.694 0.067 +49: Performance: 128.327 0.187 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40362,7 +40397,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40387,9 +40422,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.013 0.013 99.5 49: (ns/day) (hour/ns) -49: Performance: 323.315 0.074 +49: Performance: 112.321 0.214 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40407,7 +40442,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40432,9 +40467,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 289.717 0.083 +49: Performance: 131.033 0.183 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40452,7 +40487,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40477,9 +40512,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 333.782 0.072 +49: Performance: 127.352 0.188 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -40497,7 +40532,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40522,9 +40557,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 321.470 0.075 +49: Performance: 134.992 0.178 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -40542,7 +40577,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40567,12 +40602,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 320.882 0.075 +49: Performance: 140.310 0.171 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (51 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (105 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -40589,7 +40624,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40614,9 +40649,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 304.132 0.079 +49: Performance: 139.805 0.172 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40632,7 +40667,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40657,9 +40692,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 333.990 0.072 +49: Performance: 135.330 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40677,7 +40712,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40702,9 +40737,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 301.913 0.079 +49: Performance: 136.561 0.176 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40722,7 +40757,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40747,9 +40782,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 325.019 0.074 +49: Performance: 141.272 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -40767,7 +40802,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40792,9 +40827,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 328.240 0.073 +49: Performance: 129.648 0.185 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -40812,7 +40847,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40837,12 +40872,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 323.002 0.074 +49: Performance: 151.818 0.158 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (101 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -40863,7 +40898,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40888,9 +40923,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 333.007 0.072 +49: Performance: 128.652 0.187 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40910,7 +40945,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40935,9 +40970,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.013 0.013 99.6 49: (ns/day) (hour/ns) -49: Performance: 327.936 0.073 +49: Performance: 109.639 0.219 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40959,7 +40994,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -40984,9 +41019,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 335.416 0.072 +49: Performance: 133.331 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41008,7 +41043,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41033,9 +41068,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 334.098 0.072 +49: Performance: 146.516 0.164 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -41057,7 +41092,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41082,9 +41117,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 337.146 0.071 +49: Performance: 151.893 0.158 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -41106,7 +41141,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41131,12 +41166,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.1 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 340.248 0.071 +49: Performance: 132.050 0.182 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (50 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (103 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -41164,7 +41199,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41189,9 +41224,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 305.334 0.079 +49: Performance: 132.285 0.181 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41218,7 +41253,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41243,9 +41278,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.0 +49: Time: 0.011 0.011 99.2 49: (ns/day) (hour/ns) -49: Performance: 305.149 0.079 +49: Performance: 132.114 0.182 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41274,7 +41309,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41299,9 +41334,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 300.479 0.080 +49: Performance: 138.556 0.173 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41330,7 +41365,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41355,9 +41390,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.012 0.012 99.4 49: (ns/day) (hour/ns) -49: Performance: 327.758 0.073 +49: Performance: 126.837 0.189 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -41386,7 +41421,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41411,9 +41446,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 326.200 0.074 +49: Performance: 132.174 0.182 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -41442,7 +41477,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41467,12 +41502,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 313.221 0.077 +49: Performance: 136.921 0.175 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (103 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -41493,7 +41528,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41518,9 +41553,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 317.516 0.076 +49: Performance: 131.518 0.182 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41540,7 +41575,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41565,9 +41600,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 300.463 0.080 +49: Performance: 133.497 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41589,7 +41624,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41614,9 +41649,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.3 49: (ns/day) (hour/ns) -49: Performance: 315.940 0.076 +49: Performance: 144.571 0.166 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41638,7 +41673,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41663,9 +41698,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 311.836 0.077 +49: Performance: 129.880 0.185 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: @@ -41687,7 +41722,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41712,9 +41747,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 310.552 0.077 +49: Performance: 135.437 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: @@ -41736,7 +41771,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41761,12 +41796,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.009 0.009 99.4 49: (ns/day) (hour/ns) -49: Performance: 304.993 0.079 +49: Performance: 155.722 0.154 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (101 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -41783,7 +41818,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41808,9 +41843,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 319.273 0.075 +49: Performance: 136.183 0.176 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41826,7 +41861,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41851,9 +41886,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 320.792 0.075 +49: Performance: 141.967 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41871,7 +41906,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41896,9 +41931,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 320.199 0.075 +49: Performance: 136.517 0.176 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41916,7 +41951,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41941,9 +41976,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 328.021 0.073 +49: Performance: 140.757 0.171 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: @@ -41961,7 +41996,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -41986,9 +42021,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 289.030 0.083 +49: Performance: 141.694 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: @@ -42006,7 +42041,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42031,12 +42066,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 348.825 0.069 +49: Performance: 143.098 0.168 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (99 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -42053,7 +42088,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42078,9 +42113,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.014 0.014 99.6 49: (ns/day) (hour/ns) -49: Performance: 314.833 0.076 +49: Performance: 102.797 0.233 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42096,7 +42131,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42121,9 +42156,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 297.799 0.081 +49: Performance: 140.091 0.171 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42141,7 +42176,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42166,9 +42201,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 342.382 0.070 +49: Performance: 132.915 0.181 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42186,7 +42221,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42211,9 +42246,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 323.936 0.074 +49: Performance: 131.753 0.182 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: @@ -42231,7 +42266,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42256,9 +42291,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 314.193 0.076 +49: Performance: 132.769 0.181 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: @@ -42276,7 +42311,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42301,12 +42336,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 301.923 0.079 +49: Performance: 124.643 0.193 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (107 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -42323,7 +42358,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42348,9 +42383,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 286.335 0.084 +49: Performance: 142.560 0.168 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42366,7 +42401,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42391,9 +42426,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 316.069 0.076 +49: Performance: 129.916 0.185 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42411,7 +42446,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42436,9 +42471,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 320.237 0.075 +49: Performance: 129.233 0.186 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42456,7 +42491,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42481,9 +42516,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 306.651 0.078 +49: Performance: 139.927 0.172 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: @@ -42501,7 +42536,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42526,9 +42561,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 320.755 0.075 +49: Performance: 141.318 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: @@ -42546,7 +42581,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42571,12 +42606,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 326.590 0.073 +49: Performance: 141.479 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (101 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -42598,7 +42633,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42622,9 +42657,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 289.283 0.083 +49: Performance: 129.015 0.186 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42645,7 +42680,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42669,9 +42704,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.012 0.012 99.7 49: (ns/day) (hour/ns) -49: Performance: 306.826 0.078 +49: Performance: 121.708 0.197 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42694,7 +42729,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42718,9 +42753,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 276.316 0.087 +49: Performance: 135.763 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42743,7 +42778,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42767,9 +42802,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 308.731 0.078 +49: Performance: 128.690 0.186 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: @@ -42792,7 +42827,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42816,9 +42851,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 317.863 0.076 +49: Performance: 128.511 0.187 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: @@ -42841,7 +42876,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42865,12 +42900,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 285.988 0.084 +49: Performance: 134.390 0.179 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (107 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -42892,7 +42927,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42916,9 +42951,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 323.362 0.074 +49: Performance: 142.499 0.168 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42939,7 +42974,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -42963,9 +42998,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.013 0.013 99.6 49: (ns/day) (hour/ns) -49: Performance: 317.892 0.075 +49: Performance: 113.136 0.212 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42988,7 +43023,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43012,9 +43047,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.029 0.029 99.7 49: (ns/day) (hour/ns) -49: Performance: 312.259 0.077 +49: Performance: 50.443 0.476 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43037,7 +43072,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43061,9 +43096,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 317.799 0.076 +49: Performance: 121.005 0.198 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: @@ -43086,7 +43121,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43110,9 +43145,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 319.785 0.075 +49: Performance: 133.509 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: @@ -43135,7 +43170,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43159,12 +43194,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 287.204 0.084 +49: Performance: 94.823 0.253 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (130 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -43181,7 +43216,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43206,9 +43241,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.7 +49: Time: 0.012 0.012 99.7 49: (ns/day) (hour/ns) -49: Performance: 336.189 0.071 +49: Performance: 119.875 0.200 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43224,7 +43259,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43249,9 +43284,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.021 0.021 99.8 49: (ns/day) (hour/ns) -49: Performance: 313.130 0.077 +49: Performance: 68.408 0.351 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43269,7 +43304,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43294,9 +43329,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.012 0.012 99.7 49: (ns/day) (hour/ns) -49: Performance: 302.354 0.079 +49: Performance: 126.204 0.190 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43314,7 +43349,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43339,9 +43374,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 293.905 0.082 +49: Performance: 135.682 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: @@ -43359,7 +43394,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43384,9 +43419,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 308.383 0.078 +49: Performance: 135.472 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: @@ -43404,7 +43439,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43429,12 +43464,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.014 0.014 99.8 49: (ns/day) (hour/ns) -49: Performance: 302.017 0.079 +49: Performance: 105.802 0.227 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (118 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -43451,7 +43486,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43476,9 +43511,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 307.030 0.078 +49: Performance: 142.285 0.169 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43494,7 +43529,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43519,9 +43554,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.015 0.015 99.5 49: (ns/day) (hour/ns) -49: Performance: 317.023 0.076 +49: Performance: 100.234 0.239 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43539,7 +43574,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43564,9 +43599,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.013 0.013 99.5 49: (ns/day) (hour/ns) -49: Performance: 272.192 0.088 +49: Performance: 115.369 0.208 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43584,7 +43619,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43609,9 +43644,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 316.486 0.076 +49: Performance: 143.439 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: @@ -43629,7 +43664,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43654,9 +43689,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 306.931 0.078 +49: Performance: 130.880 0.183 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: @@ -43674,7 +43709,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43699,12 +43734,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 303.833 0.079 +49: Performance: 146.754 0.164 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (107 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -43721,7 +43756,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43746,9 +43781,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.013 0.013 99.5 49: (ns/day) (hour/ns) -49: Performance: 291.062 0.082 +49: Performance: 115.989 0.207 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43764,7 +43799,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43789,9 +43824,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.0 +49: Time: 0.011 0.011 98.9 49: (ns/day) (hour/ns) -49: Performance: 323.028 0.074 +49: Performance: 136.660 0.176 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43809,7 +43844,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43834,9 +43869,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.1 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 310.325 0.077 +49: Performance: 144.018 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43854,7 +43889,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43879,9 +43914,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.1 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 293.375 0.082 +49: Performance: 141.371 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: @@ -43899,7 +43934,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43924,9 +43959,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.3 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 244.537 0.098 +49: Performance: 138.478 0.173 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: @@ -43944,7 +43979,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -43969,12 +44004,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 270.821 0.089 +49: Performance: 125.006 0.192 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (55 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (104 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -43991,7 +44026,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44016,9 +44051,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 282.013 0.085 +49: Performance: 135.247 0.177 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44034,7 +44069,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44059,9 +44094,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.1 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 264.356 0.091 +49: Performance: 131.630 0.182 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44079,7 +44114,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44104,9 +44139,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.1 +49: Time: 0.012 0.012 99.4 49: (ns/day) (hour/ns) -49: Performance: 276.400 0.087 +49: Performance: 125.078 0.192 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44124,7 +44159,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44149,9 +44184,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.007 0.007 99.5 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 197.373 0.122 +49: Performance: 122.263 0.196 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: @@ -44169,7 +44204,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44194,9 +44229,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 254.079 0.094 +49: Performance: 128.292 0.187 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: @@ -44214,7 +44249,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44239,13 +44274,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 267.768 0.090 +49: Performance: 123.582 0.194 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (60 ms) -49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (945 ms total) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (107 ms) +49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (1960 ms total) 49: 49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -44277,7 +44312,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44301,9 +44336,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.013 0.013 99.3 49: (ns/day) (hour/ns) -49: Performance: 233.299 0.103 +49: Performance: 114.020 0.210 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44332,7 +44367,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44356,9 +44391,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.009 0.009 99.6 +49: Time: 0.008 0.008 99.3 49: (ns/day) (hour/ns) -49: Performance: 159.766 0.150 +49: Performance: 174.502 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44389,7 +44424,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44413,9 +44448,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 409.233 0.059 +49: Performance: 159.621 0.150 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44446,7 +44481,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44470,9 +44505,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.1 +49: Time: 0.014 0.014 99.4 49: (ns/day) (hour/ns) -49: Performance: 370.943 0.065 +49: Performance: 104.581 0.229 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -44503,7 +44538,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44527,9 +44562,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.009 0.010 99.3 49: (ns/day) (hour/ns) -49: Performance: 376.598 0.064 +49: Performance: 153.934 0.156 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -44560,7 +44595,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44584,12 +44619,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.038 0.038 99.9 +49: Time: 0.013 0.013 99.5 49: (ns/day) (hour/ns) -49: Performance: 38.821 0.618 +49: Performance: 112.663 0.213 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (1976 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3301 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -44619,7 +44654,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44643,9 +44678,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 378.777 0.063 +49: Performance: 164.431 0.146 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44674,7 +44709,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44698,9 +44733,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 396.603 0.061 +49: Performance: 179.937 0.133 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44731,7 +44766,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44755,9 +44790,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 352.322 0.068 +49: Performance: 176.880 0.136 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44788,7 +44823,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44812,9 +44847,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.1 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 311.702 0.077 +49: Performance: 163.728 0.147 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -44845,7 +44880,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44869,9 +44904,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 98.9 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 322.869 0.074 +49: Performance: 168.935 0.142 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -44902,7 +44937,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44926,12 +44961,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.025 0.025 99.7 49: (ns/day) (hour/ns) -49: Performance: 358.920 0.067 +49: Performance: 58.973 0.407 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1909 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (3272 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -44956,7 +44991,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -44981,9 +45016,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.046 0.046 99.9 +49: Time: 0.009 0.009 99.1 49: (ns/day) (hour/ns) -49: Performance: 32.161 0.746 +49: Performance: 156.608 0.153 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45007,7 +45042,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45032,9 +45067,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 359.617 0.067 +49: Performance: 163.232 0.147 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45060,7 +45095,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45085,9 +45120,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.018 0.018 99.8 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 79.556 0.302 +49: Performance: 167.805 0.143 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45113,7 +45148,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45138,9 +45173,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 98.7 49: (ns/day) (hour/ns) -49: Performance: 346.916 0.069 +49: Performance: 191.184 0.126 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -45166,7 +45201,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45191,9 +45226,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.8 +49: Time: 0.008 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 403.053 0.060 +49: Performance: 172.512 0.139 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -45219,7 +45254,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45244,12 +45279,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 329.741 0.073 +49: Performance: 173.910 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1958 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (3336 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -45274,7 +45309,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45299,9 +45334,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.055 0.055 99.9 +49: Time: 0.008 0.009 99.1 49: (ns/day) (hour/ns) -49: Performance: 26.792 0.896 +49: Performance: 171.814 0.140 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45325,7 +45360,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45350,9 +45385,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.017 0.017 99.7 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 85.066 0.282 +49: Performance: 165.681 0.145 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45378,7 +45413,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45403,9 +45438,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.7 +49: Time: 0.009 0.009 99.0 49: (ns/day) (hour/ns) -49: Performance: 433.380 0.055 +49: Performance: 162.716 0.147 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45431,7 +45466,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45456,9 +45491,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.008 0.008 99.3 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 179.490 0.134 +49: Performance: 173.428 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -45484,7 +45519,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45509,9 +45544,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.7 +49: Time: 0.008 0.008 98.9 49: (ns/day) (hour/ns) -49: Performance: 352.110 0.068 +49: Performance: 173.279 0.139 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -45537,7 +45572,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45562,12 +45597,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.057 0.057 99.9 +49: Time: 0.009 0.009 99.1 49: (ns/day) (hour/ns) -49: Performance: 25.575 0.938 +49: Performance: 169.888 0.141 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (2003 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3242 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -45592,7 +45627,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45617,9 +45652,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 385.046 0.062 +49: Performance: 160.688 0.149 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45643,7 +45678,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45668,9 +45703,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 98.0 49: (ns/day) (hour/ns) -49: Performance: 361.112 0.066 +49: Performance: 173.683 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45696,7 +45731,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45721,9 +45756,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.6 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 390.965 0.061 +49: Performance: 135.700 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45749,7 +45784,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45774,9 +45809,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 365.112 0.066 +49: Performance: 181.643 0.132 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -45802,7 +45837,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45827,9 +45862,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 98.9 49: (ns/day) (hour/ns) -49: Performance: 371.122 0.065 +49: Performance: 187.056 0.128 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -45855,7 +45890,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45880,12 +45915,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 385.875 0.062 +49: Performance: 159.539 0.150 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (1881 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3248 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -45910,7 +45945,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45935,9 +45970,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 375.094 0.064 +49: Performance: 177.562 0.135 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45961,7 +45996,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -45986,9 +46021,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.015 0.016 99.7 +49: Time: 0.011 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 94.593 0.254 +49: Performance: 133.262 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46014,7 +46049,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46039,9 +46074,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.009 0.009 99.1 49: (ns/day) (hour/ns) -49: Performance: 363.484 0.066 +49: Performance: 169.488 0.142 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46067,7 +46102,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46092,9 +46127,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.242 0.242 99.9 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 6.071 3.953 +49: Performance: 193.025 0.124 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -46120,7 +46155,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46145,9 +46180,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.027 0.027 99.8 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 54.464 0.441 +49: Performance: 156.716 0.153 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -46173,7 +46208,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46198,12 +46233,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.4 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 374.436 0.064 +49: Performance: 168.857 0.142 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2181 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (3249 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -46233,7 +46268,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46257,9 +46292,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 357.060 0.067 +49: Performance: 132.521 0.181 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46288,7 +46323,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46312,9 +46347,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.009 0.009 99.7 49: (ns/day) (hour/ns) -49: Performance: 348.915 0.069 +49: Performance: 154.658 0.155 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46345,7 +46380,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46369,9 +46404,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.022 0.022 99.9 +49: Time: 0.009 0.009 99.7 49: (ns/day) (hour/ns) -49: Performance: 66.794 0.359 +49: Performance: 159.204 0.151 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46402,7 +46437,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46426,9 +46461,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.008 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 354.442 0.068 +49: Performance: 172.683 0.139 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -46459,7 +46494,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46483,9 +46518,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.5 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 351.221 0.068 +49: Performance: 139.073 0.173 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -46516,7 +46551,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46540,12 +46575,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 352.103 0.068 +49: Performance: 164.681 0.146 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1901 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (3252 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -46570,7 +46605,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46595,9 +46630,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 339.934 0.071 +49: Performance: 152.611 0.157 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46621,7 +46656,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46646,9 +46681,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 291.672 0.082 +49: Performance: 164.933 0.146 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46674,7 +46709,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46699,9 +46734,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 334.307 0.072 +49: Performance: 151.508 0.158 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46727,7 +46762,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46752,9 +46787,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.5 +49: Time: 0.026 0.026 99.9 49: (ns/day) (hour/ns) -49: Performance: 350.895 0.068 +49: Performance: 55.615 0.432 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -46780,7 +46815,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46805,9 +46840,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.014 0.014 99.8 49: (ns/day) (hour/ns) -49: Performance: 324.180 0.074 +49: Performance: 108.255 0.222 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -46833,7 +46868,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -46858,18 +46893,18 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 338.472 0.071 +49: Performance: 163.257 0.147 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1905 ms) -49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (15714 ms total) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3259 ms) +49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (26159 ms total) 49: 49: [----------] Global test environment tear-down -49: [==========] 27 tests from 3 test cases ran. (16738 ms total) +49: [==========] 27 tests from 3 test cases ran. (28252 ms total) 49: [ PASSED ] 27 tests. -49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 16.75 sec +49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 28.27 sec test 50 Start 50: MdrunMpiCoordinationTestsTwoRanks @@ -46899,7 +46934,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -46928,18 +46963,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.5%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.3%. +50: Average load imbalance: 3.3%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 49 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.5 +50: Time: 0.081 0.041 199.5 50: (ns/day) (hour/ns) -50: Performance: 236.287 0.102 +50: Performance: 36.094 0.665 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46960,7 +46995,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -46989,18 +47024,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 2.7%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.021 0.010 197.8 50: (ns/day) (hour/ns) -50: Performance: 285.814 0.084 +50: Performance: 141.604 0.169 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47023,7 +47058,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47052,18 +47087,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.8%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 3.3%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.025 0.013 198.4 50: (ns/day) (hour/ns) -50: Performance: 276.685 0.087 +50: Performance: 116.316 0.206 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47086,7 +47121,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47114,19 +47149,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.3%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.024 0.012 198.4 50: (ns/day) (hour/ns) -50: Performance: 295.562 0.081 +50: Performance: 119.879 0.200 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47149,7 +47185,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47177,20 +47213,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 5.1%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.8%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.024 0.012 198.4 50: (ns/day) (hour/ns) -50: Performance: 281.800 0.085 +50: Performance: 123.997 0.194 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47213,7 +47248,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47241,23 +47276,24 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.6%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.7%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.025 0.013 197.8 50: (ns/day) (hour/ns) -50: Performance: 272.719 0.088 +50: Performance: 116.344 0.206 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (92 ms) -50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (92 ms total) +50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (169 ms) +50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (169 ms total) 50: 50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -47281,7 +47317,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47309,19 +47345,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.2%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.7%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.8%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.4 +50: Time: 0.027 0.014 198.5 50: (ns/day) (hour/ns) -50: Performance: 257.017 0.093 +50: Performance: 107.595 0.223 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47342,7 +47379,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47371,18 +47408,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.1 +50: Time: 0.023 0.012 198.4 50: (ns/day) (hour/ns) -50: Performance: 249.407 0.096 +50: Performance: 125.137 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47405,7 +47442,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47434,19 +47471,19 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 3.7%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.1%. +50: Average load imbalance: 4.2%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.1 +50: Time: 0.024 0.012 198.2 50: (ns/day) (hour/ns) -50: Performance: 247.736 0.097 +50: Performance: 123.320 0.195 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47469,7 +47506,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47497,19 +47534,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.0 +50: Time: 0.022 0.011 197.9 50: (ns/day) (hour/ns) -50: Performance: 268.993 0.089 +50: Performance: 130.056 0.185 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47532,7 +47570,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47560,19 +47598,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.4%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.1%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.0 +50: Time: 0.023 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 267.821 0.090 +50: Performance: 125.248 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47595,7 +47634,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47624,21 +47663,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 3.5%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.0 +50: Time: 0.024 0.012 198.4 50: (ns/day) (hour/ns) -50: Performance: 264.701 0.091 +50: Performance: 119.953 0.200 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (64 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (124 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -47660,7 +47699,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47688,19 +47727,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 6.4%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.0%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.1 +50: Time: 0.024 0.012 197.9 50: (ns/day) (hour/ns) -50: Performance: 241.593 0.099 +50: Performance: 122.501 0.196 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47721,7 +47761,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47750,18 +47790,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 40%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.5%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.4 +50: Time: 0.023 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 261.003 0.092 +50: Performance: 126.005 0.190 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47784,7 +47824,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47812,19 +47852,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.1%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.6%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 10.5%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 5.0%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.9 +50: Time: 0.026 0.013 198.7 50: (ns/day) (hour/ns) -50: Performance: 255.636 0.094 +50: Performance: 112.901 0.213 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47847,7 +47888,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47876,18 +47917,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.9 +50: Time: 0.023 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 259.200 0.093 +50: Performance: 128.078 0.187 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -47910,7 +47951,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -47939,18 +47980,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.1%. +50: Average load imbalance: 1.2%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.5 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 264.586 0.091 +50: Performance: 122.654 0.196 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -47973,7 +48014,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48002,21 +48043,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.9 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 255.665 0.094 +50: Performance: 136.038 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (64 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (118 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -48038,7 +48079,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48067,18 +48108,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.1%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 2.0%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.0 +50: Time: 0.026 0.013 198.7 50: (ns/day) (hour/ns) -50: Performance: 254.520 0.094 +50: Performance: 112.932 0.213 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48099,7 +48140,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48128,18 +48169,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.1%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 2.4%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.006 198.2 +50: Time: 0.024 0.012 197.6 50: (ns/day) (hour/ns) -50: Performance: 232.104 0.103 +50: Performance: 119.822 0.200 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48162,7 +48203,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48191,18 +48232,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.5%. +50: Average load imbalance: 1.4%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.5 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 276.299 0.087 +50: Performance: 121.625 0.197 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48225,7 +48266,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48254,18 +48295,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.7%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.7 +50: Time: 0.021 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 263.772 0.091 +50: Performance: 141.493 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -48288,7 +48329,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48316,19 +48357,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 8.6%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.9 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 243.752 0.098 +50: Performance: 130.907 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -48351,7 +48393,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48380,21 +48422,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.6%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.0%. +50: Average load imbalance: 2.2%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.1 +50: Time: 0.025 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 243.338 0.099 +50: Performance: 118.906 0.202 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (65 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (116 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -48411,7 +48453,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48438,13 +48480,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.0 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 265.144 0.091 +50: Performance: 134.848 0.178 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48460,7 +48502,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48487,13 +48529,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.3 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 248.583 0.097 +50: Performance: 131.817 0.182 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48511,7 +48553,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48538,13 +48580,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.2 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 277.316 0.087 +50: Performance: 123.422 0.194 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48562,7 +48604,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48589,13 +48631,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.2 +50: Time: 0.022 0.011 197.6 50: (ns/day) (hour/ns) -50: Performance: 280.779 0.085 +50: Performance: 131.091 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -48613,7 +48655,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48640,13 +48682,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 198.0 +50: Time: 0.025 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 313.601 0.077 +50: Performance: 119.025 0.202 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -48664,7 +48706,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48691,16 +48733,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 292.999 0.082 +50: Performance: 134.621 0.178 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (60 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (111 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -48717,7 +48759,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48744,13 +48786,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.023 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 293.873 0.082 +50: Performance: 125.940 0.191 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48766,7 +48808,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48793,13 +48835,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 295.616 0.081 +50: Performance: 133.562 0.180 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48817,7 +48859,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48844,13 +48886,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 303.507 0.079 +50: Performance: 139.853 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48868,7 +48910,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48895,13 +48937,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.021 0.011 198.1 50: (ns/day) (hour/ns) -50: Performance: 309.392 0.078 +50: Performance: 139.152 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -48919,7 +48961,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48946,13 +48988,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.021 0.011 198.3 50: (ns/day) (hour/ns) -50: Performance: 267.751 0.090 +50: Performance: 138.173 0.174 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -48970,7 +49012,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -48997,16 +49039,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.025 0.013 198.0 50: (ns/day) (hour/ns) -50: Performance: 302.357 0.079 +50: Performance: 117.388 0.204 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (58 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (110 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -49023,7 +49065,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49050,13 +49092,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.3 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 239.199 0.100 +50: Performance: 136.066 0.176 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49072,7 +49114,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49099,13 +49141,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.2 +50: Time: 0.021 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 251.870 0.095 +50: Performance: 140.755 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49123,7 +49165,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49150,13 +49192,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.006 198.3 +50: Time: 0.022 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 232.454 0.103 +50: Performance: 135.276 0.177 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49174,7 +49216,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49201,13 +49243,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.0 +50: Time: 0.021 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 265.266 0.090 +50: Performance: 141.327 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -49225,7 +49267,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49252,13 +49294,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.1 +50: Time: 0.023 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 253.925 0.095 +50: Performance: 129.045 0.186 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -49276,7 +49318,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49303,16 +49345,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.8 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 273.302 0.088 +50: Performance: 139.414 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (68 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (108 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -49333,7 +49375,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49360,13 +49402,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.1 +50: Time: 0.023 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 260.144 0.092 +50: Performance: 126.394 0.190 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49386,7 +49428,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49413,13 +49455,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.8 +50: Time: 0.021 0.011 197.8 50: (ns/day) (hour/ns) -50: Performance: 314.618 0.076 +50: Performance: 135.547 0.177 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49441,7 +49483,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49468,13 +49510,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.027 0.013 198.5 50: (ns/day) (hour/ns) -50: Performance: 315.520 0.076 +50: Performance: 109.036 0.220 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49496,7 +49538,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49523,13 +49565,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.029 0.015 198.5 50: (ns/day) (hour/ns) -50: Performance: 312.339 0.077 +50: Performance: 100.846 0.238 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -49551,7 +49593,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49578,13 +49620,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 49 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.039 0.019 199.0 50: (ns/day) (hour/ns) -50: Performance: 315.969 0.076 +50: Performance: 75.600 0.317 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -49606,7 +49648,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49633,16 +49675,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.3 +50: Time: 0.021 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 266.341 0.090 +50: Performance: 141.687 0.169 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (58 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (124 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -49670,7 +49712,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49697,13 +49739,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.6 +50: Time: 0.038 0.019 199.0 50: (ns/day) (hour/ns) -50: Performance: 243.542 0.099 +50: Performance: 77.126 0.311 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49730,7 +49772,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49757,13 +49799,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.3 +50: Time: 0.028 0.014 198.0 50: (ns/day) (hour/ns) -50: Performance: 292.041 0.082 +50: Performance: 102.330 0.235 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49792,7 +49834,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49819,13 +49861,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.007 198.3 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 221.123 0.109 +50: Performance: 135.715 0.177 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49854,7 +49896,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49881,13 +49923,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.2 +50: Time: 0.025 0.012 197.5 50: (ns/day) (hour/ns) -50: Performance: 300.154 0.080 +50: Performance: 117.937 0.203 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -49916,7 +49958,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -49943,13 +49985,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 196.7 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 249.729 0.096 +50: Performance: 132.230 0.182 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -49978,7 +50020,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50005,16 +50047,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.5 +50: Time: 0.026 0.013 198.7 50: (ns/day) (hour/ns) -50: Performance: 259.604 0.092 +50: Performance: 114.329 0.210 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (65 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (126 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -50035,7 +50077,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50062,13 +50104,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.2 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 284.873 0.084 +50: Performance: 139.136 0.172 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50088,7 +50130,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50115,13 +50157,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.3 +50: Time: 0.022 0.011 198.2 50: (ns/day) (hour/ns) -50: Performance: 281.085 0.085 +50: Performance: 133.496 0.180 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50143,7 +50185,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50170,13 +50212,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.2 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 291.618 0.082 +50: Performance: 131.331 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50198,7 +50240,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50225,13 +50267,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 49 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.0 +50: Time: 0.064 0.032 199.2 50: (ns/day) (hour/ns) -50: Performance: 267.967 0.090 +50: Performance: 45.996 0.522 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: @@ -50253,7 +50295,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50280,13 +50322,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.2 +50: Time: 0.024 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 256.521 0.094 +50: Performance: 119.955 0.200 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: @@ -50308,7 +50350,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50335,16 +50377,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.025 0.013 198.1 50: (ns/day) (hour/ns) -50: Performance: 284.721 0.084 +50: Performance: 117.410 0.204 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (62 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (134 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -50361,7 +50403,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50388,13 +50430,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.3 +50: Time: 0.030 0.015 199.0 50: (ns/day) (hour/ns) -50: Performance: 264.599 0.091 +50: Performance: 97.503 0.246 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50410,7 +50452,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50437,13 +50479,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 46 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.4 +50: Time: 0.022 0.011 198.3 50: (ns/day) (hour/ns) -50: Performance: 247.759 0.097 +50: Performance: 131.506 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50461,7 +50503,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50488,13 +50530,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.3 +50: Time: 0.022 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 275.745 0.087 +50: Performance: 133.753 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50512,7 +50554,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50539,13 +50581,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 198.0 +50: Time: 0.022 0.011 198.1 50: (ns/day) (hour/ns) -50: Performance: 316.418 0.076 +50: Performance: 134.268 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: @@ -50563,7 +50605,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50590,13 +50632,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.7 +50: Time: 0.022 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 310.985 0.077 +50: Performance: 135.172 0.178 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: @@ -50614,7 +50656,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50641,16 +50683,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.3 +50: Time: 0.024 0.012 198.7 50: (ns/day) (hour/ns) -50: Performance: 278.683 0.086 +50: Performance: 121.637 0.197 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (59 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (117 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -50667,7 +50709,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50694,13 +50736,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.024 0.012 198.2 50: (ns/day) (hour/ns) -50: Performance: 274.661 0.087 +50: Performance: 123.492 0.194 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50716,7 +50758,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50743,13 +50785,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.026 0.013 198.0 50: (ns/day) (hour/ns) -50: Performance: 310.476 0.077 +50: Performance: 110.350 0.217 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50767,7 +50809,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50794,13 +50836,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.023 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 282.540 0.085 +50: Performance: 128.356 0.187 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50818,7 +50860,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50845,13 +50887,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.024 0.012 198.3 50: (ns/day) (hour/ns) -50: Performance: 298.108 0.081 +50: Performance: 123.136 0.195 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: @@ -50869,7 +50911,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50896,13 +50938,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.023 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 308.590 0.078 +50: Performance: 125.002 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: @@ -50920,7 +50962,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -50947,16 +50989,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.023 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 310.803 0.077 +50: Performance: 125.173 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (58 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (118 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -50973,7 +51015,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51000,13 +51042,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 46 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.3 +50: Time: 0.020 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 238.978 0.100 +50: Performance: 144.052 0.167 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51022,7 +51064,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51049,13 +51091,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 289.344 0.083 +50: Performance: 136.602 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51073,7 +51115,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51100,13 +51142,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.021 0.011 198.0 50: (ns/day) (hour/ns) -50: Performance: 299.201 0.080 +50: Performance: 138.758 0.173 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51124,7 +51166,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51151,13 +51193,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.6 +50: Time: 0.020 0.010 197.5 50: (ns/day) (hour/ns) -50: Performance: 285.155 0.084 +50: Performance: 148.080 0.162 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: @@ -51175,7 +51217,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51202,13 +51244,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 46 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.014 0.007 197.8 +50: Time: 0.020 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 214.496 0.112 +50: Performance: 146.354 0.164 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: @@ -51226,7 +51268,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51253,16 +51295,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.1 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 284.568 0.084 +50: Performance: 134.971 0.178 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (63 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (108 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -51284,7 +51326,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51312,16 +51354,17 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 61%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.3%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 196.1 +50: Time: 0.024 0.012 197.3 50: (ns/day) (hour/ns) -50: Performance: 239.804 0.100 +50: Performance: 118.916 0.202 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51342,7 +51385,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51371,15 +51414,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. +50: Average load imbalance: 0.1%. 50: The balanceable part of the MD step is 63%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.6%. +50: Part of the total run time spent waiting due to load imbalance: 0.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.1 +50: Time: 0.023 0.012 197.6 50: (ns/day) (hour/ns) -50: Performance: 262.253 0.092 +50: Performance: 125.101 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51402,7 +51445,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51431,15 +51474,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 63%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.7%. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 196.7 +50: Time: 0.021 0.011 197.6 50: (ns/day) (hour/ns) -50: Performance: 243.566 0.099 +50: Performance: 136.976 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51462,7 +51505,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51491,15 +51534,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. +50: Average load imbalance: 2.0%. +50: The balanceable part of the MD step is 63%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.2 +50: Time: 0.023 0.012 197.5 50: (ns/day) (hour/ns) -50: Performance: 272.800 0.088 +50: Performance: 124.234 0.193 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: @@ -51522,7 +51565,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51551,15 +51594,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.006 196.5 +50: Time: 0.024 0.012 197.3 50: (ns/day) (hour/ns) -50: Performance: 230.702 0.104 +50: Performance: 122.809 0.195 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: @@ -51582,7 +51625,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51610,19 +51653,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 63%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 7.7%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.1 +50: Time: 0.024 0.012 196.9 50: (ns/day) (hour/ns) -50: Performance: 258.210 0.093 +50: Performance: 118.489 0.203 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (65 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (114 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -51644,7 +51688,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51673,18 +51717,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.7%. +50: Average load imbalance: 3.3%. 50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Part of the total run time spent waiting due to load imbalance: 1.9%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.7 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 309.137 0.078 +50: Performance: 123.741 0.194 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51705,7 +51749,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51734,18 +51778,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.0%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.5%. +50: Average load imbalance: 1.3%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.023 0.012 197.6 50: (ns/day) (hour/ns) -50: Performance: 280.925 0.085 +50: Performance: 127.455 0.188 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51768,7 +51812,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51798,17 +51842,17 @@ 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. 50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.9 +50: Time: 0.022 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 260.701 0.092 +50: Performance: 134.188 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51831,7 +51875,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51860,18 +51904,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. +50: Average load imbalance: 0.8%. 50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 284.238 0.084 +50: Performance: 130.385 0.184 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: @@ -51894,7 +51938,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51923,18 +51967,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 3.1%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.6 +50: Time: 0.021 0.011 197.6 50: (ns/day) (hour/ns) -50: Performance: 289.121 0.083 +50: Performance: 135.349 0.177 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: @@ -51957,7 +52001,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -51985,22 +52029,23 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 6.9%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.8%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.006 198.1 +50: Time: 0.021 0.011 197.8 50: (ns/day) (hour/ns) -50: Performance: 228.065 0.105 +50: Performance: 136.061 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (60 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (111 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -52017,7 +52062,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52045,9 +52090,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.5 +50: Time: 0.022 0.011 197.1 50: (ns/day) (hour/ns) -50: Performance: 290.068 0.083 +50: Performance: 129.832 0.185 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52063,7 +52108,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52091,9 +52136,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.006 197.1 +50: Time: 0.026 0.013 197.8 50: (ns/day) (hour/ns) -50: Performance: 227.832 0.105 +50: Performance: 109.729 0.219 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52111,7 +52156,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52139,9 +52184,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.007 197.1 +50: Time: 0.022 0.011 197.7 50: (ns/day) (hour/ns) -50: Performance: 219.924 0.109 +50: Performance: 134.079 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52159,7 +52204,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52187,9 +52232,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.9 +50: Time: 0.022 0.011 197.8 50: (ns/day) (hour/ns) -50: Performance: 260.049 0.092 +50: Performance: 133.437 0.180 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: @@ -52207,7 +52252,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52235,9 +52280,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.5 +50: Time: 0.023 0.012 197.0 50: (ns/day) (hour/ns) -50: Performance: 293.654 0.082 +50: Performance: 125.711 0.191 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: @@ -52255,7 +52300,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52283,12 +52328,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.5 +50: Time: 0.021 0.011 197.7 50: (ns/day) (hour/ns) -50: Performance: 299.203 0.080 +50: Performance: 136.520 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (61 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (111 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -52305,7 +52350,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52332,13 +52377,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 297.701 0.081 +50: Performance: 119.282 0.201 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52354,7 +52399,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52381,13 +52426,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.8 +50: Time: 0.023 0.012 198.7 50: (ns/day) (hour/ns) -50: Performance: 310.490 0.077 +50: Performance: 124.432 0.193 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52405,7 +52450,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52432,13 +52477,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.3 +50: Time: 0.020 0.010 197.4 50: (ns/day) (hour/ns) -50: Performance: 303.388 0.079 +50: Performance: 142.067 0.169 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52456,7 +52501,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52483,13 +52528,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.023 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 300.683 0.080 +50: Performance: 124.725 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: @@ -52507,7 +52552,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52534,13 +52579,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.8 +50: Time: 0.023 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 311.483 0.077 +50: Performance: 129.178 0.186 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: @@ -52558,7 +52603,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52585,16 +52630,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 299.492 0.080 +50: Performance: 122.920 0.195 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (57 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (113 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -52611,7 +52656,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52638,13 +52683,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 197.6 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 272.313 0.088 +50: Performance: 129.907 0.185 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52660,7 +52705,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52687,13 +52732,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.9 +50: Time: 0.025 0.012 198.8 50: (ns/day) (hour/ns) -50: Performance: 280.671 0.086 +50: Performance: 118.812 0.202 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52711,7 +52756,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52738,13 +52783,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.007 198.5 +50: Time: 0.021 0.011 197.7 50: (ns/day) (hour/ns) -50: Performance: 216.686 0.111 +50: Performance: 138.014 0.174 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52762,7 +52807,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52789,13 +52834,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.007 198.4 +50: Time: 0.020 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 225.577 0.106 +50: Performance: 143.438 0.167 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: @@ -52813,7 +52858,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52840,13 +52885,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.2 +50: Time: 0.022 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 258.922 0.093 +50: Performance: 134.250 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: @@ -52864,7 +52909,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52891,16 +52936,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.3 +50: Time: 0.021 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 260.953 0.092 +50: Performance: 139.727 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (63 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (109 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -52917,7 +52962,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52944,13 +52989,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.8 +50: Time: 0.026 0.013 198.2 50: (ns/day) (hour/ns) -50: Performance: 239.964 0.100 +50: Performance: 113.153 0.212 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52966,7 +53011,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -52993,13 +53038,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 40 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.006 197.5 +50: Time: 0.025 0.013 198.6 50: (ns/day) (hour/ns) -50: Performance: 227.855 0.105 +50: Performance: 116.992 0.205 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53017,7 +53062,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53044,13 +53089,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.7 +50: Time: 0.025 0.013 197.4 50: (ns/day) (hour/ns) -50: Performance: 244.330 0.098 +50: Performance: 115.723 0.207 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53068,7 +53113,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53095,13 +53140,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 40 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.013 0.007 197.9 +50: Time: 0.027 0.014 198.5 50: (ns/day) (hour/ns) -50: Performance: 222.907 0.108 +50: Performance: 106.427 0.226 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: @@ -53119,7 +53164,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53146,13 +53191,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.6 +50: Time: 0.025 0.013 197.5 50: (ns/day) (hour/ns) -50: Performance: 251.720 0.095 +50: Performance: 117.305 0.205 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: @@ -53170,7 +53215,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53197,17 +53242,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.1 +50: Time: 0.026 0.013 198.3 50: (ns/day) (hour/ns) -50: Performance: 244.990 0.098 +50: Performance: 110.017 0.218 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (65 ms) -50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (1115 ms total) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (128 ms) +50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (2101 ms total) 50: 50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -53239,7 +53284,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53267,19 +53312,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.1%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 9.9%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.5%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.0 +50: Time: 0.019 0.009 197.7 50: (ns/day) (hour/ns) -50: Performance: 296.353 0.081 +50: Performance: 154.951 0.155 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -53308,7 +53353,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53337,18 +53382,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 0.9%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: 50: -50: NOTE: 40 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.0 +50: Time: 0.032 0.016 198.4 50: (ns/day) (hour/ns) -50: Performance: 380.730 0.063 +50: Performance: 91.525 0.262 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53379,7 +53424,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53408,18 +53453,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.3 +50: Time: 0.019 0.009 197.1 50: (ns/day) (hour/ns) -50: Performance: 374.953 0.064 +50: Performance: 155.387 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53450,7 +53495,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53478,19 +53523,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.1%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 4.1%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.1%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.4 +50: Time: 0.019 0.009 197.2 50: (ns/day) (hour/ns) -50: Performance: 372.655 0.064 +50: Performance: 154.925 0.155 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -53521,7 +53566,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53550,18 +53595,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.5%. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.6 +50: Time: 0.018 0.009 196.3 50: (ns/day) (hour/ns) -50: Performance: 357.133 0.067 +50: Performance: 155.884 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -53592,7 +53637,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53621,21 +53666,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Average load imbalance: 2.9%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: -50: NOTE: 49 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.055 0.028 199.6 +50: Time: 0.024 0.012 198.3 50: (ns/day) (hour/ns) -50: Performance: 53.016 0.453 +50: Performance: 122.674 0.196 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (2021 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3807 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -53665,7 +53710,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53694,18 +53739,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 196.8 +50: Time: 0.023 0.012 198.1 50: (ns/day) (hour/ns) -50: Performance: 322.028 0.075 +50: Performance: 124.834 0.192 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -53734,7 +53779,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53763,18 +53808,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.2%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.7%. +50: Average load imbalance: 0.6%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.3%. 50: 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 195.0 +50: Time: 0.022 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 335.200 0.072 +50: Performance: 129.497 0.185 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53805,7 +53850,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53834,18 +53879,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 195.1 +50: Time: 0.018 0.009 198.0 50: (ns/day) (hour/ns) -50: Performance: 316.227 0.076 +50: Performance: 164.457 0.146 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53876,7 +53921,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53905,18 +53950,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 1.7%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 195.2 +50: Time: 0.019 0.010 197.7 50: (ns/day) (hour/ns) -50: Performance: 318.518 0.075 +50: Performance: 151.840 0.158 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -53947,7 +53992,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -53977,17 +54022,17 @@ 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. 50: Average load imbalance: 2.2%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 48 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.043 0.022 199.0 +50: Time: 0.031 0.016 198.2 50: (ns/day) (hour/ns) -50: Performance: 67.941 0.353 +50: Performance: 93.404 0.257 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -54018,7 +54063,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54046,22 +54091,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 5.4%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.8%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.8 +50: Time: 0.018 0.009 197.7 50: (ns/day) (hour/ns) -50: Performance: 251.028 0.096 +50: Performance: 164.261 0.146 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (2013 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (3820 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -54086,7 +54131,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54114,9 +54159,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.4 +50: Time: 0.020 0.010 197.2 50: (ns/day) (hour/ns) -50: Performance: 287.464 0.083 +50: Performance: 147.459 0.163 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -54140,7 +54185,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54168,9 +54213,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 197.0 +50: Time: 0.017 0.009 197.9 50: (ns/day) (hour/ns) -50: Performance: 328.673 0.073 +50: Performance: 168.597 0.142 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54196,7 +54241,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54224,9 +54269,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 197.7 +50: Time: 0.018 0.009 198.1 50: (ns/day) (hour/ns) -50: Performance: 328.584 0.073 +50: Performance: 157.945 0.152 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54252,7 +54297,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54280,9 +54325,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.056 0.028 199.6 +50: Time: 0.019 0.009 198.0 50: (ns/day) (hour/ns) -50: Performance: 52.148 0.460 +50: Performance: 156.711 0.153 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -54308,7 +54353,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54336,9 +54381,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.3 +50: Time: 0.016 0.008 197.6 50: (ns/day) (hour/ns) -50: Performance: 381.072 0.063 +50: Performance: 182.448 0.132 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -54364,7 +54409,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54392,12 +54437,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.095 0.048 199.7 +50: Time: 0.018 0.009 197.9 50: (ns/day) (hour/ns) -50: Performance: 30.863 0.778 +50: Performance: 159.438 0.151 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (2038 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (3636 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -54422,7 +54467,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54450,9 +54495,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.150 0.075 199.8 +50: Time: 0.019 0.010 198.2 50: (ns/day) (hour/ns) -50: Performance: 19.581 1.226 +50: Performance: 151.767 0.158 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -54476,7 +54521,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54504,9 +54549,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.1 +50: Time: 0.019 0.009 198.0 50: (ns/day) (hour/ns) -50: Performance: 368.501 0.065 +50: Performance: 156.078 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54532,7 +54577,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54560,9 +54605,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.007 0.004 196.3 +50: Time: 0.017 0.009 197.8 50: (ns/day) (hour/ns) -50: Performance: 384.632 0.062 +50: Performance: 171.016 0.140 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54588,7 +54633,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54616,9 +54661,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.043 0.022 199.3 +50: Time: 0.017 0.009 197.6 50: (ns/day) (hour/ns) -50: Performance: 67.766 0.354 +50: Performance: 168.551 0.142 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -54644,7 +54689,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54672,9 +54717,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.007 0.004 196.2 +50: Time: 0.017 0.009 197.9 50: (ns/day) (hour/ns) -50: Performance: 395.734 0.061 +50: Performance: 166.310 0.144 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -54700,7 +54745,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54728,12 +54773,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.0 +50: Time: 0.018 0.009 198.1 50: (ns/day) (hour/ns) -50: Performance: 379.812 0.063 +50: Performance: 164.793 0.146 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (2050 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3557 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -54758,7 +54803,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54786,9 +54831,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.0 +50: Time: 0.019 0.009 198.2 50: (ns/day) (hour/ns) -50: Performance: 252.515 0.095 +50: Performance: 155.280 0.155 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -54812,7 +54857,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54840,9 +54885,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.053 0.027 199.5 +50: Time: 0.018 0.009 198.1 50: (ns/day) (hour/ns) -50: Performance: 55.187 0.435 +50: Performance: 160.423 0.150 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54868,7 +54913,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54896,9 +54941,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.016 0.008 198.2 50: (ns/day) (hour/ns) -50: Performance: 291.734 0.082 +50: Performance: 179.904 0.133 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54924,7 +54969,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -54952,9 +54997,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.078 0.039 199.6 +50: Time: 0.076 0.038 199.6 50: (ns/day) (hour/ns) -50: Performance: 37.712 0.636 +50: Performance: 38.666 0.621 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -54980,7 +55025,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55008,9 +55053,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.3 +50: Time: 0.018 0.009 198.4 50: (ns/day) (hour/ns) -50: Performance: 307.316 0.078 +50: Performance: 160.866 0.149 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -55036,7 +55081,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55064,12 +55109,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 197.7 +50: Time: 0.018 0.009 197.9 50: (ns/day) (hour/ns) -50: Performance: 336.038 0.071 +50: Performance: 159.009 0.151 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (1905 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3606 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -55094,7 +55139,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55122,9 +55167,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.2 +50: Time: 0.019 0.010 197.3 50: (ns/day) (hour/ns) -50: Performance: 300.932 0.080 +50: Performance: 151.200 0.159 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -55148,7 +55193,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55176,9 +55221,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 196.6 +50: Time: 0.021 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 367.328 0.065 +50: Performance: 136.846 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55204,7 +55249,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55232,9 +55277,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.027 0.014 198.3 50: (ns/day) (hour/ns) -50: Performance: 303.228 0.079 +50: Performance: 108.295 0.222 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55260,7 +55305,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55288,9 +55333,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.2 +50: Time: 0.019 0.009 197.4 50: (ns/day) (hour/ns) -50: Performance: 374.506 0.064 +50: Performance: 155.750 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -55316,7 +55361,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55344,9 +55389,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 196.4 +50: Time: 0.020 0.010 197.2 50: (ns/day) (hour/ns) -50: Performance: 378.533 0.063 +50: Performance: 145.472 0.165 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -55372,7 +55417,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55400,12 +55445,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.3 +50: Time: 0.018 0.009 197.2 50: (ns/day) (hour/ns) -50: Performance: 351.383 0.068 +50: Performance: 157.843 0.152 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (1858 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (3784 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -55435,7 +55480,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55463,16 +55508,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 5.1%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 196.0 +50: Time: 0.023 0.012 196.3 50: (ns/day) (hour/ns) -50: Performance: 330.258 0.073 +50: Performance: 126.166 0.190 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -55501,7 +55546,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55530,15 +55575,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.6%. +50: Average load imbalance: 2.9%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.072 0.036 199.5 +50: Time: 0.021 0.011 196.9 50: (ns/day) (hour/ns) -50: Performance: 40.678 0.590 +50: Performance: 135.294 0.177 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55569,7 +55614,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55598,15 +55643,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 1.5%. +50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 195.6 +50: Time: 0.021 0.010 197.5 50: (ns/day) (hour/ns) -50: Performance: 348.291 0.069 +50: Performance: 140.306 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55637,7 +55682,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55665,16 +55710,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 3.8%. -50: The balanceable part of the MD step is 63%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.4%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.4%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 196.2 +50: Time: 0.018 0.009 196.4 50: (ns/day) (hour/ns) -50: Performance: 304.692 0.079 +50: Performance: 160.769 0.149 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -55705,7 +55750,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55733,16 +55778,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.0%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.9%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 3.6%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 195.7 +50: Time: 0.019 0.010 197.4 50: (ns/day) (hour/ns) -50: Performance: 321.571 0.075 +50: Performance: 150.428 0.160 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -55773,7 +55818,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55801,19 +55846,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 3.5%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.111 0.055 199.6 +50: Time: 0.018 0.009 195.4 50: (ns/day) (hour/ns) -50: Performance: 26.484 0.906 +50: Performance: 157.591 0.152 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1957 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (3501 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -55838,7 +55883,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55866,9 +55911,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.083 0.041 199.5 +50: Time: 0.026 0.013 196.3 50: (ns/day) (hour/ns) -50: Performance: 35.397 0.678 +50: Performance: 112.604 0.213 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -55892,7 +55937,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55920,9 +55965,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 195.6 +50: Time: 0.052 0.026 198.0 50: (ns/day) (hour/ns) -50: Performance: 333.061 0.072 +50: Performance: 56.243 0.427 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55948,7 +55993,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -55976,9 +56021,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.1 +50: Time: 0.020 0.010 195.9 50: (ns/day) (hour/ns) -50: Performance: 276.944 0.087 +50: Performance: 140.519 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -56004,7 +56049,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -56032,9 +56077,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 196.1 +50: Time: 0.020 0.010 196.3 50: (ns/day) (hour/ns) -50: Performance: 307.219 0.078 +50: Performance: 147.278 0.163 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -56060,7 +56105,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -56088,9 +56133,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.2 +50: Time: 0.021 0.010 197.1 50: (ns/day) (hour/ns) -50: Performance: 256.789 0.093 +50: Performance: 140.732 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -56116,7 +56161,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -56144,18 +56189,18 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.4 +50: Time: 0.020 0.010 196.5 50: (ns/day) (hour/ns) -50: Performance: 274.756 0.087 +50: Performance: 141.379 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1910 ms) -50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (15752 ms total) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3441 ms) +50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (29152 ms total) 50: 50: [----------] Global test environment tear-down -50: [==========] 27 tests from 3 test cases ran. (16959 ms total) +50: [==========] 27 tests from 3 test cases ran. (31423 ms total) 50: [ PASSED ] 27 tests. -50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 16.97 sec +50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 31.44 sec test 51 Start 51: GmxapiExternalInterfaceTests @@ -56165,7 +56210,7 @@ 51: [----------] Global test environment set-up. 51: [----------] 8 tests from GmxApiTest 51: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -51: Setting the LD random seed to -310510605 +51: Setting the LD random seed to -571704385 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56187,7 +56232,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56215,12 +56260,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.010 0.005 197.1 +51: Time: 0.022 0.011 198.6 51: (ns/day) (hour/ns) -51: Performance: 104.369 0.230 -51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (343 ms) +51: Performance: 44.767 0.536 +51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (566 ms) 51: [ RUN ] GmxApiTest.SystemConstruction -51: Setting the LD random seed to -1153452329 +51: Setting the LD random seed to -35323937 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56247,13 +56292,13 @@ 51: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 51: Note that mdrun will redetermine rlist based on the actual pair-list setup 51: This run will generate roughly 0 Mb of data -51: [ OK ] GmxApiTest.SystemConstruction (309 ms) +51: [ OK ] GmxApiTest.SystemConstruction (572 ms) 51: [ RUN ] GmxApiTest.SaneVersionComparisons 51: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 51: [ RUN ] GmxApiTest.VersionNamed0_1_Features 51: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 51: [ RUN ] GmxApiTest.RunnerBasicMD -51: Setting the LD random seed to -203424003 +51: Setting the LD random seed to 230588382 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56275,7 +56320,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56303,12 +56348,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.009 0.005 196.2 +51: Time: 0.021 0.010 198.6 51: (ns/day) (hour/ns) -51: Performance: 104.681 0.229 -51: [ OK ] GmxApiTest.RunnerBasicMD (310 ms) +51: Performance: 48.852 0.491 +51: [ OK ] GmxApiTest.RunnerBasicMD (574 ms) 51: [ RUN ] GmxApiTest.RunnerReinitialize -51: Setting the LD random seed to -25829965 +51: Setting the LD random seed to 1358625775 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56330,7 +56375,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56362,10 +56407,10 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.010 0.005 196.5 +51: Time: 0.025 0.013 197.2 51: (ns/day) (hour/ns) -51: Performance: 678.244 0.035 -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Performance: 283.320 0.085 +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56388,12 +56433,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.010 0.005 197.3 +51: Time: 0.021 0.011 198.5 51: (ns/day) (hour/ns) -51: Performance: 679.202 0.035 -51: [ OK ] GmxApiTest.RunnerReinitialize (320 ms) +51: Performance: 332.519 0.072 +51: [ OK ] GmxApiTest.RunnerReinitialize (590 ms) 51: [ RUN ] GmxApiTest.RunnerContinuedMD -51: Setting the LD random seed to -37783255 +51: Setting the LD random seed to -301990017 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56415,7 +56460,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56443,10 +56488,10 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.010 0.005 198.0 +51: Time: 0.022 0.011 198.6 51: (ns/day) (hour/ns) -51: Performance: 386.556 0.062 -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Performance: 164.061 0.146 +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56471,12 +56516,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.008 0.004 197.4 +51: Time: 0.020 0.010 198.5 51: (ns/day) (hour/ns) -51: Performance: 843.724 0.028 -51: [ OK ] GmxApiTest.RunnerContinuedMD (342 ms) +51: Performance: 353.258 0.068 +51: [ OK ] GmxApiTest.RunnerContinuedMD (596 ms) 51: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -51: Setting the LD random seed to -1134954563 +51: Setting the LD random seed to -33560195 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56498,7 +56543,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56526,10 +56571,10 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.151 0.076 199.8 +51: Time: 0.022 0.011 198.5 51: (ns/day) (hour/ns) -51: Performance: 4.467 5.372 -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Performance: 30.397 0.790 +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -56552,11 +56597,11 @@ 51: 2 steps, 0.0 ps. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.006 0.003 195.3 +51: Time: 0.018 0.009 198.4 51: (ns/day) (hour/ns) -51: Performance: 103.558 0.232 -51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (389 ms) -51: [----------] 8 tests from GmxApiTest (2013 ms total) +51: Performance: 37.180 0.646 +51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (591 ms) +51: [----------] 8 tests from GmxApiTest (3489 ms total) 51: 51: [----------] 1 test from GmxApiBasicTest 51: [ RUN ] GmxApiBasicTest.Status @@ -56564,9 +56609,9 @@ 51: [----------] 1 test from GmxApiBasicTest (0 ms total) 51: 51: [----------] Global test environment tear-down -51: [==========] 9 tests from 2 test cases ran. (2013 ms total) +51: [==========] 9 tests from 2 test cases ran. (3489 ms total) 51: [ PASSED ] 9 tests. -51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 2.02 sec +51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 3.51 sec test 52 Start 52: GmxapiMpiTests @@ -56576,7 +56621,7 @@ 52: [----------] Global test environment set-up. 52: [----------] 8 tests from GmxApiTest 52: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -52: Setting the LD random seed to -1128342153 +52: Setting the LD random seed to -1622737923 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56598,7 +56643,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56626,12 +56671,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.246 0.123 199.9 +52: Time: 0.027 0.013 198.9 52: (ns/day) (hour/ns) -52: Performance: 4.111 5.839 -52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (453 ms) +52: Performance: 37.952 0.632 +52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (566 ms) 52: [ RUN ] GmxApiTest.SystemConstruction -52: Setting the LD random seed to -180518995 +52: Setting the LD random seed to 1876942799 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56658,13 +56703,13 @@ 52: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 52: Note that mdrun will redetermine rlist based on the actual pair-list setup 52: This run will generate roughly 0 Mb of data -52: [ OK ] GmxApiTest.SystemConstruction (315 ms) +52: [ OK ] GmxApiTest.SystemConstruction (556 ms) 52: [ RUN ] GmxApiTest.SaneVersionComparisons 52: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 52: [ RUN ] GmxApiTest.VersionNamed0_1_Features 52: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 52: [ RUN ] GmxApiTest.RunnerBasicMD -52: Setting the LD random seed to -100959621 +52: Setting the LD random seed to -124356881 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56686,7 +56731,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56714,12 +56759,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.010 0.005 197.6 +52: Time: 0.022 0.011 198.7 52: (ns/day) (hour/ns) -52: Performance: 105.129 0.228 -52: [ OK ] GmxApiTest.RunnerBasicMD (312 ms) +52: Performance: 46.313 0.518 +52: [ OK ] GmxApiTest.RunnerBasicMD (565 ms) 52: [ RUN ] GmxApiTest.RunnerReinitialize -52: Setting the LD random seed to -170001441 +52: Setting the LD random seed to -13107397 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56741,7 +56786,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56773,10 +56818,10 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.230 0.115 199.9 +52: Time: 0.023 0.012 198.8 52: (ns/day) (hour/ns) -52: Performance: 30.734 0.781 -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Performance: 305.054 0.079 +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56799,12 +56844,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.009 0.005 198.2 +52: Time: 0.029 0.015 198.7 52: (ns/day) (hour/ns) -52: Performance: 761.582 0.032 -52: [ OK ] GmxApiTest.RunnerReinitialize (429 ms) +52: Performance: 243.304 0.099 +52: [ OK ] GmxApiTest.RunnerReinitialize (589 ms) 52: [ RUN ] GmxApiTest.RunnerContinuedMD -52: Setting the LD random seed to -143065890 +52: Setting the LD random seed to -1644250753 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56826,7 +56871,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56854,10 +56899,10 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.049 0.024 199.6 +52: Time: 0.020 0.010 198.4 52: (ns/day) (hour/ns) -52: Performance: 76.007 0.316 -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Performance: 188.584 0.127 +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56882,12 +56927,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.010 0.005 197.3 +52: Time: 0.022 0.011 197.6 52: (ns/day) (hour/ns) -52: Performance: 723.265 0.033 -52: [ OK ] GmxApiTest.RunnerContinuedMD (340 ms) +52: Performance: 323.371 0.074 +52: [ OK ] GmxApiTest.RunnerContinuedMD (602 ms) 52: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -52: Setting the LD random seed to -276963457 +52: Setting the LD random seed to -1216696401 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56909,7 +56954,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56937,10 +56982,10 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.010 0.005 197.4 +52: Time: 0.021 0.010 198.5 52: (ns/day) (hour/ns) -52: Performance: 66.618 0.360 -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Performance: 32.263 0.744 +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -56963,11 +57008,11 @@ 52: 2 steps, 0.0 ps. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.007 0.004 195.7 +52: Time: 0.019 0.010 198.1 52: (ns/day) (hour/ns) -52: Performance: 92.759 0.259 -52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (320 ms) -52: [----------] 8 tests from GmxApiTest (2169 ms total) +52: Performance: 34.767 0.690 +52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (585 ms) +52: [----------] 8 tests from GmxApiTest (3464 ms total) 52: 52: [----------] 1 test from GmxApiBasicTest 52: [ RUN ] GmxApiBasicTest.Status @@ -56975,9 +57020,9 @@ 52: [----------] 1 test from GmxApiBasicTest (0 ms total) 52: 52: [----------] Global test environment tear-down -52: [==========] 9 tests from 2 test cases ran. (2169 ms total) +52: [==========] 9 tests from 2 test cases ran. (3464 ms total) 52: [ PASSED ] 9 tests. -52/54 Test #52: GmxapiMpiTests ...................... Passed 2.18 sec +52/54 Test #52: GmxapiMpiTests ...................... Passed 3.48 sec test 53 Start 53: GmxapiInternalInterfaceTests @@ -56987,7 +57032,7 @@ 53: [----------] Global test environment set-up. 53: [----------] 2 tests from GmxApiTest 53: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -53: Setting the LD random seed to -138564105 +53: Setting the LD random seed to -167858348 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -57014,9 +57059,9 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (302 ms) +53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (534 ms) 53: [ RUN ] GmxApiTest.CreateApiWorkflow -53: Setting the LD random seed to -15226884 +53: Setting the LD random seed to -34875953 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -57043,13 +57088,13 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.CreateApiWorkflow (299 ms) -53: [----------] 2 tests from GmxApiTest (601 ms total) +53: [ OK ] GmxApiTest.CreateApiWorkflow (539 ms) +53: [----------] 2 tests from GmxApiTest (1073 ms total) 53: 53: [----------] Global test environment tear-down -53: [==========] 2 tests from 1 test case ran. (601 ms total) +53: [==========] 2 tests from 1 test case ran. (1073 ms total) 53: [ PASSED ] 2 tests. -53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 0.61 sec +53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 1.09 sec test 54 Start 54: GmxapiInternalsMpiTests @@ -57059,7 +57104,7 @@ 54: [----------] Global test environment set-up. 54: [----------] 2 tests from GmxApiTest 54: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -54: Setting the LD random seed to -1098965127 +54: Setting the LD random seed to -570818581 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -57086,9 +57131,9 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (302 ms) +54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (543 ms) 54: [ RUN ] GmxApiTest.CreateApiWorkflow -54: Setting the LD random seed to 1400892413 +54: Setting the LD random seed to 1939865495 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -57115,25 +57160,25 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.CreateApiWorkflow (297 ms) -54: [----------] 2 tests from GmxApiTest (599 ms total) +54: [ OK ] GmxApiTest.CreateApiWorkflow (539 ms) +54: [----------] 2 tests from GmxApiTest (1082 ms total) 54: 54: [----------] Global test environment tear-down -54: [==========] 2 tests from 1 test case ran. (600 ms total) +54: [==========] 2 tests from 1 test case ran. (1083 ms total) 54: [ PASSED ] 2 tests. -54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 0.61 sec +54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 1.10 sec 100% tests passed, 0 tests failed out of 54 Label Time Summary: -GTest = 59.46 sec*proc (54 tests) -IntegrationTest = 16.81 sec*proc (12 tests) -MpiTest = 38.58 sec*proc (8 tests) -SlowTest = 33.72 sec*proc (2 tests) -UnitTest = 8.93 sec*proc (40 tests) +GTest = 102.66 sec*proc (54 tests) +IntegrationTest = 28.44 sec*proc (12 tests) +MpiTest = 67.64 sec*proc (8 tests) +SlowTest = 59.71 sec*proc (2 tests) +UnitTest = 14.51 sec*proc (40 tests) -Total Test time (real) = 59.52 sec -/usr/bin/make -j16 -C build/basic-dp tests +Total Test time (real) = 102.71 sec +/usr/bin/make -j7 -C build/basic-dp tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -57147,91 +57192,91 @@ /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 0%] Built target linearalgebra +[ 1%] Built target tng_io_obj +[ 1%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 2%] Built target scanner +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +[ 3%] Built target modularsimulator +[ 5%] Built target thread_mpi +[ 5%] Built target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' Scanning dependencies of target gtest make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 5%] Built target vmddlopen +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc -[ 0%] Built target vmddlopen -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -[ 1%] Built target scanner -[ 2%] Built target tng_io_obj -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 2%] Built target lmfit_objlib -[ 2%] Built target mdrun_objlib -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 3%] Built target modularsimulator -[ 3%] Built target linearalgebra -[ 3%] Built target release-version-info -[ 5%] Built target thread_mpi -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 5%] Built target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -57305,152 +57350,289 @@ /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +Scanning dependencies of target testutils-test +Scanning dependencies of target utility-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +Scanning dependencies of target applied_forces-test +Scanning dependencies of target mdrun_test_infrastructure +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-test -Scanning dependencies of target testutils-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +Scanning dependencies of target mdlib-test +Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -Scanning dependencies of target utility-mpi-test +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -Scanning dependencies of target hardware-test +[ 69%] Built target testutils-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target fft-test -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -Scanning dependencies of target gpu_utils-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 69%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp +[ 69%] Built target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target mdrun_test_infrastructure +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -Scanning dependencies of target mdspan-test -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build +[ 69%] Built target domdec-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 70%] Built target applied_forces-test +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +Scanning dependencies of target fft-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -Scanning dependencies of target mdrunutility-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 71%] Built target testutils-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target gpu_utils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 71%] Built target mdrun_test_infrastructure +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 71%] Built target fft-test +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +Scanning dependencies of target hardware-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +Scanning dependencies of target math-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 72%] Built target hardware-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-test-shared +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -Scanning dependencies of target applied_forces-test -Scanning dependencies of target ewald-test -Scanning dependencies of target math-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 72%] Built target mdrunutility-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 72%] Built target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +[ 72%] Built target ewald-test +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -Scanning dependencies of target mdlib-test -Scanning dependencies of target utility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdspan-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target testutils-mpi-test +[ 75%] Built target utility-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp Scanning dependencies of target options-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target utility-mpi-test +[ 76%] Built target mdlib-test /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= @@ -57459,15 +57641,15 @@ /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target onlinehelp-test-shared +[ 76%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -57476,31 +57658,27 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target mdrunutility-test-shared +[ 76%] Built target pbcutil-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target hardware-test +[ 76%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -57509,8 +57687,8 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target fft-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -57519,14 +57697,8 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target pbcutil-test +[ 76%] Built target mdspan-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= @@ -57535,13 +57707,8 @@ /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target domdec-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -57550,8 +57717,13 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target restraintpotential-test +[ 76%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -57560,42 +57732,43 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target pull-test +[ 76%] Built target taskassignment-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target simd-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 77%] Built target topology-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target taskassignment-test +[ 77%] Built target table-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -57604,19 +57777,8 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 71%] Built target topology-test +[ 78%] Built target math-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= @@ -57625,14 +57787,14 @@ /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/entropy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target testutils-test +[ 78%] Built target awh-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= @@ -57641,12 +57803,17 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target applied_forces-test +[ 78%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= @@ -57655,14 +57822,11 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target mdrun_test_infrastructure +[ 80%] Built target random-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= @@ -57671,55 +57835,62 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target awh-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target table-test +[ 81%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/editconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target mdspan-test +[ 82%] Built target pdb2gmx2-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target correlations-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/autocorr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 82%] Built target pdb2gmx1-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target gpu_utils-test +[ 82%] Built target correlations-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= @@ -57728,9 +57899,7 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/datatest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 75%] Built target gmxana-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= @@ -57739,13 +57908,7 @@ /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/builder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 75%] Built target pdb2gmx3-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -57754,14 +57917,12 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 76%] Built target pdb2gmx2-test +[ 83%] Built target simd-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -57770,14 +57931,14 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/dump.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 76%] Built target pdb2gmx1-test +[ 84%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test @@ -57785,15 +57946,23 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 84%] Built target compat-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/solvate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 77%] Built target energyanalysis-test +[ 85%] Built target options-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= @@ -57802,23 +57971,12 @@ /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include 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-D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 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CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target random-test +[ 87%] Built target gmxpreprocess-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake --color= @@ -57827,11 +57985,12 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/densityfittingmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target correlations-test +[ 87%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= @@ -57840,23 +57999,12 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/domain_decomposition.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o +/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target tool-test +[ 87%] Built target analysisdata-test-shared /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= @@ -57865,11 +58013,17 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target ewald-test +[ 88%] Built target fileio-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake --color= @@ -57878,42 +58032,33 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/exactcontinuation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp -/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target analysisdata-test-shared +[ 88%] Built target mdrun-modules-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target mdrun-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target mdrun-modules-test +[ 88%] Built target mdrun-mpi-coordination-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake --color= @@ -57922,36 +58067,37 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/compressed_x_output.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target compat-test +[ 89%] Built target coordinateio-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp Scanning dependencies of target mdrun-non-integrator-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target mdrun-mpi-coordination-test +[ 90%] Built target mdrun-mpi-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[4]: Entering directory 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tpitest.cpp -cd 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 80%] Built target gmxpreprocess-test +[ 91%] Built target mdrun-output-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= @@ -57977,39 +58122,20 @@ /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 81%] Built target mdlib-test -/usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= -Scanning dependencies of target gmxapi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd 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-I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -cd 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CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= +[ 94%] Built target mdrun-io-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= @@ -58018,55 +58144,38 @@ /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp +Scanning dependencies of target gmxapi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 83%] Built target mdrun-tpi-test +/usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 83%] Built target workflow-details-mpi-test +[ 94%] Built target mdrun-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp Scanning dependencies of target workflow-details-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests 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CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 84%] Built target mdrun-io-test +[ 94%] Built target workflow-details-mpi-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= @@ -58075,25 +58184,34 @@ /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 84%] Built target mdrun-test +[ 95%] Built target workflow-details-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -[ 85%] Built target mdrun-output-test +[ 95%] Built target gmxapi-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -58102,156 +58220,83 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 87%] Built target mdrun-mpi-test -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -Scanning dependencies of target onlinehelp-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 88%] Built target options-test +[ 95%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 95%] Built target mdrun-non-integrator-test +/usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 89%] Built target coordinateio-test -/usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 90%] Built target workflow-details-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" 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CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 91%] Built target mdrun-non-integrator-test +[ 96%] Built target gmxapi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 91%] Built target gmxapi-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 91%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 92%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 94%] Built target simd-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 94%] Built target onlinehelp-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" 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CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp +[ 97%] Built target mdrunutility-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/distance.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 97%] Built target selection-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/select.cpp -[ 94%] Built target analysisdata-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 95%] Built target commandline-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 96%] Built target math-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 96%] Built target selection-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +[ 98%] Built target commandline-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 98%] Built target utility-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [100%] Built target trajectoryanalysis-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[100%] Built target analysisdata-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -58287,26 +58332,26 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (2 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -58314,9 +58359,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData -1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData @@ -58324,17 +58369,17 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys 1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree @@ -58354,7 +58399,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices @@ -58377,7 +58422,7 @@ 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (5 ms total) +1: [----------] 34 tests from ReferenceDataTest (7 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -58409,19 +58454,19 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (0 ms) +1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (1 ms) +1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (10 ms total) +1: [==========] 59 tests from 5 test cases ran. (12 ms total) 1: [ PASSED ] 59 tests. - 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.02 sec + 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.03 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -58449,27 +58494,27 @@ 3: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.Move 3: [ OK ] AllocatorTest/0.Move (0 ms) 3: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/0 (0 ms total) +3: [----------] 5 tests from AllocatorTest/0 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.Move 3: [ OK ] AllocatorTest/1.Move (0 ms) 3: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/1 (1 ms total) +3: [----------] 5 tests from AllocatorTest/1 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -58503,12 +58548,12 @@ 3: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 3: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment -3: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/4.Move 3: [ OK ] AllocatorTest/4.Move (0 ms) 3: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/4 (0 ms total) +3: [----------] 5 tests from AllocatorTest/4 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -58641,7 +58686,7 @@ 3: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/4 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/4 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks @@ -58851,7 +58896,7 @@ 3: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/14 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/14 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks @@ -59026,7 +59071,7 @@ 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms @@ -59038,10 +59083,10 @@ 3: [ RUN ] TreeValueTransformTest.ObjectFromString 3: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (0 ms total) +3: [----------] 6 tests from TreeValueTransformTest (1 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -59054,13 +59099,13 @@ 3: [ RUN ] LoggerTest.LogsToStream 3: [ OK ] LoggerTest.LogsToStream (0 ms) 3: [ RUN ] LoggerTest.LogsToFile -3: [ OK ] LoggerTest.LogsToFile (1 ms) +3: [ OK ] LoggerTest.LogsToFile (0 ms) 3: [ RUN ] LoggerTest.LevelFilteringWorks 3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams 3: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleFiles -3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) +3: [ OK ] LoggerTest.LogsToMultipleFiles (1 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) 3: [----------] 7 tests from LoggerTest (1 ms total) @@ -59089,7 +59134,7 @@ 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (0 ms) +3: [ OK ] PathTest.SearchOperationsWork (1 ms) 3: [----------] 2 tests from PathTest (1 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest @@ -59165,7 +59210,7 @@ 3: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 3: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectly -3: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) +3: [ OK ] TextLineWrapperTest.WrapsCorrectly (1 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndent @@ -59178,7 +59223,7 @@ 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (0 ms total) +3: [----------] 10 tests from TextLineWrapperTest (1 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -59240,7 +59285,7 @@ 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) +3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) 3: 3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 3: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -59281,14 +59326,14 @@ 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (1 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (0 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -59304,13 +59349,13 @@ 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (1 ms) -3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) +3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (8 ms total) +3: [==========] 347 tests from 56 test cases ran. (12 ms total) 3: [ PASSED ] 347 tests. - 3/54 Test #3: UtilityUnitTests .................... Passed 0.02 sec + 3/54 Test #3: UtilityUnitTests .................... Passed 0.04 sec test 4 Start 4: UtilityMpiUnitTests @@ -59320,15 +59365,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (3 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (1 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (4 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (1 ms total) +4: [==========] 2 tests from 1 test case ran. (4 ms total) 4: [ PASSED ] 2 tests. - 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.01 sec + 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec test 5 Start 5: MdlibUnitTest @@ -59338,14 +59383,14 @@ 5: [----------] Global test environment set-up. 5: [----------] 1 test from VerletBufferConstraintTest 5: [ RUN ] VerletBufferConstraintTest.EqualMasses -5: [ OK ] VerletBufferConstraintTest.EqualMasses (1 ms) -5: [----------] 1 test from VerletBufferConstraintTest (1 ms total) +5: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) +5: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages 5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages -5: [ OK ] PrEbinTest.HandlesEmptyAverages (1 ms) +5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) 5: [----------] 2 tests from PrEbinTest (1 ms total) 5: 5: [----------] 4 tests from ShakeTest @@ -59383,7 +59428,7 @@ 5: 5: [----------] 9 tests from UpdateGroups 5: [ RUN ] UpdateGroups.ethaneUA -5: [ OK ] UpdateGroups.ethaneUA (1 ms) +5: [ OK ] UpdateGroups.ethaneUA (0 ms) 5: [ RUN ] UpdateGroups.methane 5: [ OK ] UpdateGroups.methane (0 ms) 5: [ RUN ] UpdateGroups.ethane @@ -59400,16 +59445,16 @@ 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (1 ms total) +5: [----------] 9 tests from UpdateGroups (0 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -5: [----------] 1 test from UpdateGroupsCog (0 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) +5: [----------] 1 test from UpdateGroupsCog (1 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 @@ -59425,7 +59470,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 -5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/6 @@ -59441,7 +59486,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/3 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/3 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/4 -5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/4 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/4 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/6 @@ -59531,7 +59576,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/2 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/3 @@ -59576,7 +59621,7 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (3 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (4 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 @@ -59587,31 +59632,31 @@ 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as double precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (5 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (8 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (20 ms total) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (29 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -59677,7 +59722,7 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (0 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -59708,7 +59753,7 @@ 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/12 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 (0 ms) -5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (0 ms total) +5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (1 ms total) 5: 5: [----------] 16 tests from WithParameters/LeapFrogTest 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 @@ -59722,9 +59767,9 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (3 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 @@ -59736,14 +59781,14 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (14 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (2 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (21 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -59753,15 +59798,15 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 @@ -59769,13 +59814,13 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (2 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (6 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (9 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (46 ms total) +5: [==========] 187 tests from 13 test cases ran. (67 ms total) 5: [ PASSED ] 184 tests. 5: [ FAILED ] 3 tests, listed below: 5: [ FAILED ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/0, where GetParam() = 1 @@ -59783,19 +59828,19 @@ 5: [ FAILED ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/5, where GetParam() = -2.22045e-16 5: 5: 3 FAILED TESTS - 5/54 Test #5: MdlibUnitTest .......................***Failed 0.06 sec + 5/54 Test #5: MdlibUnitTest .......................***Failed 0.09 sec [==========] Running 187 tests from 13 test cases. [----------] Global test environment set-up. [----------] 1 test from VerletBufferConstraintTest [ RUN ] VerletBufferConstraintTest.EqualMasses -[ OK ] VerletBufferConstraintTest.EqualMasses (1 ms) -[----------] 1 test from VerletBufferConstraintTest (1 ms total) +[ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) +[----------] 1 test from VerletBufferConstraintTest (0 ms total) [----------] 2 tests from PrEbinTest [ RUN ] PrEbinTest.HandlesAverages [ OK ] PrEbinTest.HandlesAverages (0 ms) [ RUN ] PrEbinTest.HandlesEmptyAverages -[ OK ] PrEbinTest.HandlesEmptyAverages (1 ms) +[ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) [----------] 2 tests from PrEbinTest (1 ms total) [----------] 4 tests from ShakeTest @@ -59833,7 +59878,7 @@ [----------] 9 tests from UpdateGroups [ RUN ] UpdateGroups.ethaneUA -[ OK ] UpdateGroups.ethaneUA (1 ms) +[ OK ] UpdateGroups.ethaneUA (0 ms) [ RUN ] UpdateGroups.methane [ OK ] UpdateGroups.methane (0 ms) [ RUN ] UpdateGroups.ethane @@ -59850,16 +59895,16 @@ [ OK ] UpdateGroups.waterFlexAngle (0 ms) [ RUN ] UpdateGroups.twoMoltypes [ OK ] UpdateGroups.twoMoltypes (0 ms) -[----------] 9 tests from UpdateGroups (1 ms total) +[----------] 9 tests from UpdateGroups (0 ms total) [----------] 1 test from UpdateGroupsCog [ RUN ] UpdateGroupsCog.ComputesCogs -[ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -[----------] 1 test from UpdateGroupsCog (0 ms total) +[ OK ] UpdateGroupsCog.ComputesCogs (1 ms) +[----------] 1 test from UpdateGroupsCog (1 ms total) [----------] 84 tests from WithParameters/ConstraintsTest [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -[ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) +[ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 @@ -59875,7 +59920,7 @@ [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 (0 ms) [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 -[ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 (0 ms) +[ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 (1 ms) [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 (0 ms) [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/6 @@ -59891,7 +59936,7 @@ [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/3 [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/3 (0 ms) [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/4 -[ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/4 (1 ms) +[ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/4 (0 ms) [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/5 [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/5 (0 ms) [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/6 @@ -59981,7 +60026,7 @@ [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 (0 ms) [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 -[ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 (1 ms) +[ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 (0 ms) [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/2 [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/2 (0 ms) [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/3 @@ -60026,7 +60071,7 @@ [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -[----------] 84 tests from WithParameters/ConstraintsTest (3 ms total) +[----------] 84 tests from WithParameters/ConstraintsTest (4 ms total) [----------] 11 tests from WithParameters/EnergyOutputTest [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 @@ -60037,31 +60082,31 @@ Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as double precision energy file - Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) + Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as double precision energy file - Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (5 ms) + Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (8 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as double precision energy file - Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (1 ms) + Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as double precision energy file Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as double precision energy file - Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) + Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as double precision energy file Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as double precision energy file - Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) + Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as double precision energy file Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -[----------] 11 tests from WithParameters/EnergyOutputTest (20 ms total) +[----------] 11 tests from WithParameters/EnergyOutputTest (29 ms total) [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -60127,7 +60172,7 @@ [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -[----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (0 ms total) +[----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -60158,7 +60203,7 @@ [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/12 (0 ms) [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 (0 ms) -[----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (0 ms total) +[----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (1 ms total) [----------] 16 tests from WithParameters/LeapFrogTest [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 @@ -60172,9 +60217,9 @@ [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) +[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (3 ms) +[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 @@ -60186,14 +60231,14 @@ [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 -[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) +[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (2 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) +[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -[----------] 16 tests from WithParameters/LeapFrogTest (14 ms total) +[ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (2 ms) +[----------] 16 tests from WithParameters/LeapFrogTest (21 ms total) [----------] 13 tests from WithParameters/SettleTest [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -60203,15 +60248,15 @@ [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 -[ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) +[ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (1 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -[ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) +[ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -[ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +[ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 @@ -60219,13 +60264,13 @@ [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -[ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +[ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (2 ms) [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -[----------] 13 tests from WithParameters/SettleTest (6 ms total) +[----------] 13 tests from WithParameters/SettleTest (9 ms total) [----------] Global test environment tear-down -[==========] 187 tests from 13 test cases ran. (46 ms total) +[==========] 187 tests from 13 test cases ran. (67 ms total) [ PASSED ] 184 tests. [ FAILED ] 3 tests, listed below: [ FAILED ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/0, where GetParam() = 1 @@ -60243,14 +60288,14 @@ 6: [----------] Global test environment set-up. 6: [----------] 2 tests from DensityFittingTest 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows -6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) +6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (1 ms) -6: [----------] 2 tests from DensityFittingTest (2 ms total) +6: [ OK ] DensityFittingTest.SingleAtom (0 ms) +6: [----------] 2 tests from DensityFittingTest (0 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters -6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) +6: [ OK ] DensityFittingOptionsTest.DefaultParameters (1 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive 6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive @@ -60264,7 +60309,7 @@ 6: [ RUN ] DensityFittingOptionsTest.KvtToInternal 6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent -6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (1 ms) +6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) 6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest @@ -60286,17 +60331,17 @@ 6: 6: [----------] 3 tests from ElectricFieldTest 6: [ RUN ] ElectricFieldTest.Static -6: [ OK ] ElectricFieldTest.Static (0 ms) +6: [ OK ] ElectricFieldTest.Static (1 ms) 6: [ RUN ] ElectricFieldTest.Oscillating 6: [ OK ] ElectricFieldTest.Oscillating (0 ms) 6: [ RUN ] ElectricFieldTest.Pulsed 6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (0 ms total) +6: [----------] 3 tests from ElectricFieldTest (1 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (3 ms total) +6: [==========] 20 tests from 4 test cases ran. (2 ms total) 6: [ PASSED ] 20 tests. - 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.01 sec + 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.02 sec test 7 Start 7: CommandLineUnitTests @@ -60336,14 +60381,14 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -60371,8 +60416,8 @@ 7: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions -7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (1 ms) -7: [----------] 13 tests from CommandLineParserTest (2 ms total) +7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) +7: [----------] 13 tests from CommandLineParserTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -60424,7 +60469,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension -7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) +7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (1 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 7: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles @@ -60432,13 +60477,13 @@ 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) +7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) @@ -60497,67 +60542,67 @@ 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (10 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (13 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (10 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (13 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (66 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (6 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (123 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 @@ -60565,13 +60610,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 @@ -60583,13 +60628,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 @@ -60601,9 +60646,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 @@ -60613,9 +60658,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 @@ -60627,19 +60672,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 @@ -60653,13 +60698,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 @@ -60671,35 +60716,35 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 @@ -60707,33 +60752,33 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 @@ -60743,61 +60788,61 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 @@ -60809,13 +60854,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 @@ -60827,105 +60872,105 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (33 ms total) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +9: [----------] 144 tests from SaneInput/PmeGatherTest (46 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (13 ms total) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) +9: [----------] 16 tests from SaneInput/PmeSolveTest (19 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (5 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (7 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (7 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (11 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 @@ -60933,38 +60978,38 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (12 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (18 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 @@ -60972,24 +61017,24 @@ 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (13 ms total) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (18 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 @@ -60999,44 +61044,44 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (15 ms total) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (21 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (40 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (6 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (57 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (242 ms total) +9: [==========] 257 tests from 10 test cases ran. (367 ms total) 9: [ PASSED ] 257 tests. - 9/54 Test #9: EwaldUnitTests ...................... Passed 0.27 sec + 9/54 Test #9: EwaldUnitTests ...................... Passed 0.41 sec test 10 Start 10: FFTUnitTests @@ -61046,48 +61091,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (16 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (16 ms) -10: [----------] 2 tests from ManyFFTTest (26 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (32 ms) +10: [----------] 2 tests from ManyFFTTest (48 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (5 ms) -10: [----------] 1 test from FFTTest (5 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (10 ms) +10: [----------] 1 test from FFTTest (10 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (3 ms) +10: [----------] 1 test from FFFTest3D (4 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (10 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (20 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (14 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (33 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (27 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (63 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (66 ms total) +10: [==========] 14 tests from 4 test cases ran. (125 ms total) 10: [ PASSED ] 14 tests. -10/54 Test #10: FFTUnitTests ........................ Passed 0.08 sec +10/54 Test #10: FFTUnitTests ........................ Passed 0.14 sec test 11 Start 11: GpuUtilsUnitTests @@ -61241,10 +61286,10 @@ 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment -11: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) +11: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (1 ms) 11: [ RUN ] AllocatorTest/0.Move 11: [ OK ] AllocatorTest/0.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/0 (0 ms total) +11: [----------] 4 tests from AllocatorTest/0 (1 ms total) 11: 11: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -61261,12 +61306,12 @@ 11: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 11: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -11: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +11: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 11: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.Move 11: [ OK ] AllocatorTest/2.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/2 (1 ms total) +11: [----------] 4 tests from AllocatorTest/2 (0 ms total) 11: 11: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -61282,7 +61327,7 @@ 11: [----------] Global test environment tear-down 11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.01 sec +11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.02 sec test 12 Start 12: HardwareUnitTests @@ -61292,19 +61337,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (22 ms) +12: [ OK ] HardwareTopologyTest.Execute (15 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (23 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (13 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (25 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (13 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (23 ms) -12: [----------] 4 tests from HardwareTopologyTest (93 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (13 ms) +12: [----------] 4 tests from HardwareTopologyTest (54 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (93 ms total) +12: [==========] 4 tests from 1 test case ran. (54 ms total) 12: [ PASSED ] 4 tests. -12/54 Test #12: HardwareUnitTests ................... Passed 0.10 sec +12/54 Test #12: HardwareUnitTests ................... Passed 0.07 sec test 13 Start 13: MathUnitTests @@ -61347,7 +61392,7 @@ 13: [ RUN ] TranslateAndScaleTest.identityTransformation 13: [ OK ] TranslateAndScaleTest.identityTransformation (0 ms) 13: [ RUN ] TranslateAndScaleTest.translationWithIdentityScaling -13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (0 ms) +13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (1 ms) 13: [ RUN ] TranslateAndScaleTest.scalingWithZeroTranslation 13: [ OK ] TranslateAndScaleTest.scalingWithZeroTranslation (0 ms) 13: [ RUN ] TranslateAndScaleTest.translationAndScalingNonTrivial @@ -61360,7 +61405,7 @@ 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect @@ -61380,14 +61425,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (15 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (41 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (14 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (42 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (16 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (33 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (46 ms total) +13: [----------] 12 tests from DensitySimilarityTest (117 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -61427,7 +61472,7 @@ 13: [ RUN ] FunctionTest.StaticLog2 13: [ OK ] FunctionTest.StaticLog2 (0 ms) 13: [ RUN ] FunctionTest.Log2I32Bit -13: [ OK ] FunctionTest.Log2I32Bit (0 ms) +13: [ OK ] FunctionTest.Log2I32Bit (1 ms) 13: [ RUN ] FunctionTest.Log2I64Bit 13: [ OK ] FunctionTest.Log2I64Bit (0 ms) 13: [ RUN ] FunctionTest.GreatestCommonDivisor @@ -61451,7 +61496,7 @@ 13: [ RUN ] FunctionTest.SixthrootInteger 13: [ OK ] FunctionTest.SixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootFloat -13: [ OK ] FunctionTest.InvsixthrootFloat (1 ms) +13: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootDouble 13: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootInteger @@ -61461,12 +61506,12 @@ 13: [ RUN ] FunctionTest.ErfInvFloat 13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble -13: [ OK ] FunctionTest.ErfInvDouble (0 ms) +13: [ OK ] FunctionTest.ErfInvDouble (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (1 ms total) +13: [----------] 21 tests from FunctionTest (3 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -61477,7 +61522,7 @@ 13: [ OK ] GaussianOn1DLattice.complementaryAmplitudesSumToZero (0 ms) 13: [ RUN ] GaussianOn1DLattice.doesNotOverflowForLargeRange 13: [ OK ] GaussianOn1DLattice.doesNotOverflowForLargeRange (0 ms) -13: [----------] 4 tests from GaussianOn1DLattice (0 ms total) +13: [----------] 4 tests from GaussianOn1DLattice (1 ms total) 13: 13: [----------] 9 tests from GaussTransformTest 13: [ RUN ] GaussTransformTest.isZeroUponConstruction @@ -61554,7 +61599,7 @@ 13: [ OK ] MatrixTest.canCreateFromLegacyMatrix (0 ms) 13: [ RUN ] MatrixTest.canFillLegacyMatrix 13: [ OK ] MatrixTest.canFillLegacyMatrix (0 ms) -13: [----------] 15 tests from MatrixTest (1 ms total) +13: [----------] 15 tests from MatrixTest (0 ms total) 13: 13: [----------] 25 tests from MultiDimArrayTest 13: [ RUN ] MultiDimArrayTest.canConstructAndFillStatic @@ -61607,7 +61652,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (0 ms total) +13: [----------] 25 tests from MultiDimArrayTest (1 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -61728,7 +61773,7 @@ 13: [ OK ] PaddedVectorTest/9.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/9.CanSwap 13: [ OK ] PaddedVectorTest/9.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/9 (0 ms total) +13: [----------] 4 tests from PaddedVectorTest/9 (1 ms total) 13: 13: [----------] 37 tests from RVecTest 13: [ RUN ] RVecTest.CanBeStoredInVector @@ -61808,9 +61853,9 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (48 ms total) +13: [==========] 204 tests from 29 test cases ran. (124 ms total) 13: [ PASSED ] 204 tests. -13/54 Test #13: MathUnitTests ....................... Passed 0.06 sec +13/54 Test #13: MathUnitTests ....................... Passed 0.14 sec test 14 Start 14: MdrunUtilityUnitTests @@ -61830,7 +61875,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -61840,14 +61885,14 @@ 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads @@ -61855,12 +61900,12 @@ 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -14: [----------] 17 tests from ThreadAffinityTest (2 ms total) +14: [----------] 17 tests from ThreadAffinityTest (4 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (3 ms total) +14: [==========] 17 tests from 1 test case ran. (4 ms total) 14: [ PASSED ] 17 tests. -14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.01 sec +14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.02 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -61870,28 +61915,28 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (2 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (5 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (6 ms total) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (10 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (3 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly @@ -61901,9 +61946,9 @@ 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (9 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (15 ms total) +15: [==========] 13 tests from 2 test cases ran. (19 ms total) 15: [ PASSED ] 13 tests. -15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.02 sec +15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.03 sec test 16 Start 16: MDSpanTests @@ -61943,14 +61988,14 @@ 16: [ RUN ] MdSpanExtension.SlicingEqualsView3D 16: [ OK ] MdSpanExtension.SlicingEqualsView3D (0 ms) 16: [ RUN ] MdSpanExtension.additionWorks -16: [ OK ] MdSpanExtension.additionWorks (0 ms) +16: [ OK ] MdSpanExtension.additionWorks (1 ms) 16: [ RUN ] MdSpanExtension.subtractionWorks 16: [ OK ] MdSpanExtension.subtractionWorks (0 ms) 16: [ RUN ] MdSpanExtension.multiplicationWorks 16: [ OK ] MdSpanExtension.multiplicationWorks (0 ms) 16: [ RUN ] MdSpanExtension.divisionWorks 16: [ OK ] MdSpanExtension.divisionWorks (0 ms) -16: [----------] 8 tests from MdSpanExtension (0 ms total) +16: [----------] 8 tests from MdSpanExtension (1 ms total) 16: 16: [----------] 3 tests from LayoutTests 16: [ RUN ] LayoutTests.LayoutRightConstruction @@ -61997,7 +62042,7 @@ 16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (0 ms total) +16: [==========] 32 tests from 7 test cases ran. (1 ms total) 16: [ PASSED ] 32 tests. 16/54 Test #16: MDSpanTests ......................... Passed 0.01 sec test 17 @@ -62009,7 +62054,7 @@ 17: [----------] Global test environment set-up. 17: [----------] 6 tests from TextTableFormatterTest 17: [ RUN ] TextTableFormatterTest.HandlesBasicCase -17: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) +17: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesIndentation @@ -62020,7 +62065,7 @@ 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (0 ms total) +17: [----------] 6 tests from TextTableFormatterTest (1 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -62061,12 +62106,12 @@ 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles 17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -17: [----------] 11 tests from HelpWriterContextTest (0 ms total) +17: [----------] 11 tests from HelpWriterContextTest (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (1 ms total) +17: [==========] 22 tests from 4 test cases ran. (3 ms total) 17: [ PASSED ] 22 tests. -17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.01 sec +17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.02 sec test 18 Start 18: OptionsUnitTests @@ -62078,13 +62123,13 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 18: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval -18: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues -18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (1 ms) +18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest @@ -62112,7 +62157,7 @@ 18: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 18: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile -18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) +18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile @@ -62137,7 +62182,7 @@ 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -62174,7 +62219,7 @@ 18: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 18: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 18: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) -18: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) +18: [----------] 4 tests from OptionsAssignerBooleanTest (1 ms total) 18: 18: [----------] 13 tests from OptionsAssignerIntegerTest 18: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue @@ -62202,8 +62247,8 @@ 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment -18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (1 ms) -18: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) +18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) +18: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 18: 18: [----------] 5 tests from OptionsAssignerDoubleTest 18: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -62252,7 +62297,7 @@ 18: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 18: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 18: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) -18: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) +18: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total) 18: 18: [----------] 8 tests from RepeatingOptionSectionTest 18: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance @@ -62320,11 +62365,11 @@ 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (1 ms) 18: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 18: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues -18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms) +18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) @@ -62339,19 +62384,19 @@ 18: [ RUN ] TreeValueSupportTest.SupportsStringOption 18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption -18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (0 ms total) +18: [----------] 8 tests from TreeValueSupportTest (1 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (3 ms total) +18: [==========] 110 tests from 18 test cases ran. (6 ms total) 18: [ PASSED ] 110 tests. -18/54 Test #18: OptionsUnitTests .................... Passed 0.01 sec +18/54 Test #18: OptionsUnitTests .................... Passed 0.02 sec test 19 Start 19: PbcutilUnitTest @@ -62384,14 +62429,14 @@ 20: [----------] Global test environment set-up. 20: [----------] 4 tests from ExponentialDistributionTest 20: [ RUN ] ExponentialDistributionTest.Output -20: [ OK ] ExponentialDistributionTest.Output (1 ms) +20: [ OK ] ExponentialDistributionTest.Output (0 ms) 20: [ RUN ] ExponentialDistributionTest.Logical 20: [ OK ] ExponentialDistributionTest.Logical (0 ms) 20: [ RUN ] ExponentialDistributionTest.Reset 20: [ OK ] ExponentialDistributionTest.Reset (0 ms) 20: [ RUN ] ExponentialDistributionTest.AltParam 20: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from ExponentialDistributionTest (1 ms total) +20: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output @@ -62402,7 +62447,7 @@ 20: [ OK ] GammaDistributionTest.Reset (0 ms) 20: [ RUN ] GammaDistributionTest.AltParam 20: [ OK ] GammaDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from GammaDistributionTest (0 ms total) +20: [----------] 4 tests from GammaDistributionTest (1 ms total) 20: 20: [----------] 4 tests from NormalDistributionTest 20: [ RUN ] NormalDistributionTest.Output @@ -62437,8 +62482,8 @@ 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -62457,14 +62502,14 @@ 20: 20: [----------] 4 tests from UniformIntDistributionTest 20: [ RUN ] UniformIntDistributionTest.Output -20: [ OK ] UniformIntDistributionTest.Output (0 ms) +20: [ OK ] UniformIntDistributionTest.Output (1 ms) 20: [ RUN ] UniformIntDistributionTest.Logical 20: [ OK ] UniformIntDistributionTest.Logical (0 ms) 20: [ RUN ] UniformIntDistributionTest.Reset 20: [ OK ] UniformIntDistributionTest.Reset (0 ms) 20: [ RUN ] UniformIntDistributionTest.AltParam 20: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from UniformIntDistributionTest (0 ms total) +20: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 20: 20: [----------] 5 tests from UniformRealDistributionTest 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical @@ -62485,7 +62530,7 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 @@ -62498,12 +62543,12 @@ 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (4 ms total) +20: [==========] 44 tests from 10 test cases ran. (5 ms total) 20: [ PASSED ] 44 tests. -20/54 Test #20: RandomUnitTests ..................... Passed 0.02 sec +20/54 Test #20: RandomUnitTests ..................... Passed 0.03 sec test 21 Start 21: RestraintTests @@ -62517,7 +62562,7 @@ 21: [----------] 1 test from RestraintManager (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 1 test from 1 test case ran. (0 ms total) +21: [==========] 1 test from 1 test case ran. (1 ms total) 21: [ PASSED ] 1 test. 21/54 Test #21: RestraintTests ...................... Passed 0.01 sec test 22 @@ -62533,50 +62578,50 @@ 22: [ RUN ] SplineTableTest/0.Sinc 22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (11 ms) +22: [ OK ] SplineTableTest/0.LJ12 (17 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (3 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (20 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (33 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (23 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (45 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (5 ms) +22: [ OK ] SplineTableTest/0.Simd (9 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (20 ms) -22: [----------] 10 tests from SplineTableTest/0 (84 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (38 ms) +22: [----------] 10 tests from SplineTableTest/0 (150 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (0 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (2 ms) 22: [ RUN ] SplineTableTest/1.Sinc 22: [ OK ] SplineTableTest/1.Sinc (2 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (23 ms) +22: [ OK ] SplineTableTest/1.LJ12 (45 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (45 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (89 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (54 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (119 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (13 ms) +22: [ OK ] SplineTableTest/1.Simd (22 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (45 ms) -22: [----------] 10 tests from SplineTableTest/1 (186 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (81 ms) +22: [----------] 10 tests from SplineTableTest/1 (366 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (270 ms total) +22: [==========] 20 tests from 2 test cases ran. (516 ms total) 22: [ PASSED ] 20 tests. -22/54 Test #22: TableUnitTests ...................... Passed 0.28 sec +22/54 Test #22: TableUnitTests ...................... Passed 0.53 sec test 23 Start 23: TaskAssignmentUnitTests @@ -62633,10 +62678,10 @@ 24: [ RUN ] SymtabTest.TryToAddDuplicates 24: [ OK ] SymtabTest.TryToAddDuplicates (0 ms) 24: [ RUN ] SymtabTest.AddLargeNumberOfEntries -24: [ OK ] SymtabTest.AddLargeNumberOfEntries (1 ms) +24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable 24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (1 ms total) +24: [----------] 6 tests from SymtabTest (0 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 11 tests from 3 test cases ran. (1 ms total) @@ -62675,8 +62720,8 @@ 26: [----------] Global test environment set-up. 26: [----------] 1 test from BiasTest 26: [ RUN ] BiasTest.DetectsCovering -26: [ OK ] BiasTest.DetectsCovering (0 ms) -26: [----------] 1 test from BiasTest (0 ms total) +26: [ OK ] BiasTest.DetectsCovering (1 ms) +26: [----------] 1 test from BiasTest (1 ms total) 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood @@ -62685,34 +62730,34 @@ 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (2 ms total) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +26: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) -26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (5 ms total) +26: [==========] 12 tests from 4 test cases ran. (7 ms total) 26: [ PASSED ] 12 tests. -26/54 Test #26: AwhTest ............................. Passed 0.01 sec +26/54 Test #26: AwhTest ............................. Passed 0.02 sec test 27 Start 27: SimdUnitTests @@ -62863,95 +62908,95 @@ 27: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 27: [ RUN ] SimdVectorOperationsTest.cprod 27: [ OK ] SimdVectorOperationsTest.cprod (0 ms) -27: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) +27: [----------] 3 tests from SimdVectorOperationsTest (1 ms total) 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsDouble -27: [ OK ] SimdMathTest.generateTestPointsDouble (1 ms) +27: [ OK ] SimdMathTest.generateTestPointsDouble (0 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt -27: [ OK ] SimdMathTest.invsqrt (0 ms) +27: [ OK ] SimdMathTest.invsqrt (1 ms) 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair 27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (1 ms) +27: [ OK ] SimdMathTest.sqrt (2 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe 27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (1 ms) +27: [ OK ] SimdMathTest.inv (2 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt -27: [ OK ] SimdMathTest.cbrt (1 ms) +27: [ OK ] SimdMathTest.cbrt (2 ms) 27: [ RUN ] SimdMathTest.invcbrt 27: [ OK ] SimdMathTest.invcbrt (2 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (1 ms) +27: [ OK ] SimdMathTest.log2 (2 ms) 27: [ RUN ] SimdMathTest.log -27: [ OK ] SimdMathTest.log (1 ms) +27: [ OK ] SimdMathTest.log (2 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (10 ms) +27: [ OK ] SimdMathTest.exp2 (5 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe 27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (10 ms) +27: [ OK ] SimdMathTest.exp (6 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (1 ms) +27: [ OK ] SimdMathTest.expUnsafe (2 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (1 ms) +27: [ OK ] SimdMathTest.erf (2 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (1 ms) +27: [ OK ] SimdMathTest.erfc (2 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (1 ms) +27: [ OK ] SimdMathTest.sin (2 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (2 ms) +27: [ OK ] SimdMathTest.cos (3 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (2 ms) +27: [ OK ] SimdMathTest.tan (3 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (1 ms) +27: [ OK ] SimdMathTest.asin (3 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (1 ms) +27: [ OK ] SimdMathTest.acos (2 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (2 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (3 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy 27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy -27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (10 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (4 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (10 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (5 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (2 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe @@ -62959,26 +63004,26 @@ 27: [ RUN ] SimdMathTest.erfSingleAccuracy 27: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy 27: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy -27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (86 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) +27: [----------] 56 tests from SimdMathTest (103 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -63272,9 +63317,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 247 tests from 19 test cases ran. (87 ms total) +27: [==========] 247 tests from 19 test cases ran. (105 ms total) 27: [ PASSED ] 247 tests. -27/54 Test #27: SimdUnitTests ....................... Passed 0.10 sec +27/54 Test #27: SimdUnitTests ....................... Passed 0.12 sec test 28 Start 28: CompatibilityHelpersTests @@ -63292,7 +63337,7 @@ 28: [ RUN ] OptionalTest.CanDefaultConstructUsingNonDefaultConstructibleType 28: [ OK ] OptionalTest.CanDefaultConstructUsingNonDefaultConstructibleType (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromEmptyOptional -28: [ OK ] OptionalTest.CanCopyConstructFromEmptyOptional (0 ms) +28: [ OK ] OptionalTest.CanCopyConstructFromEmptyOptional (1 ms) 28: [ RUN ] OptionalTest.CanMoveConstructFromEmptyOptional 28: [ OK ] OptionalTest.CanMoveConstructFromEmptyOptional (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromEmptyOptionalWithExplicitConversion @@ -63390,7 +63435,7 @@ 28: sizeof( optional ): 16 (12) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (0 ms total) +28: [----------] 45 tests from OptionalTest (1 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -63422,14 +63467,14 @@ 28: 28: [----------] 4 tests from OptionalImplicitValueTest 28: [ RUN ] OptionalImplicitValueTest.CanObtainValueConst -28: [ OK ] OptionalImplicitValueTest.CanObtainValueConst (0 ms) +28: [ OK ] OptionalImplicitValueTest.CanObtainValueConst (1 ms) 28: [ RUN ] OptionalImplicitValueTest.CanObtainValueNonConst 28: [ OK ] OptionalImplicitValueTest.CanObtainValueNonConst (0 ms) 28: [ RUN ] OptionalImplicitValueTest.CanObtainMovedFromValueConst 28: [ OK ] OptionalImplicitValueTest.CanObtainMovedFromValueConst (0 ms) 28: [ RUN ] OptionalImplicitValueTest.CanObtainMovedFromValueNonConst 28: [ OK ] OptionalImplicitValueTest.CanObtainMovedFromValueNonConst (0 ms) -28: [----------] 4 tests from OptionalImplicitValueTest (0 ms total) +28: [----------] 4 tests from OptionalImplicitValueTest (1 ms total) 28: 28: [----------] 20 tests from OptionalIntValueTest 28: [ RUN ] OptionalIntValueTest.CanObtainValueFromDereferenceOperatorConst @@ -63660,7 +63705,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (0 ms total) +28: [----------] 80 tests from StringViewTest (1 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -63676,9 +63721,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (1 ms total) +28: [==========] 170 tests from 12 test cases ran. (3 ms total) 28: [ PASSED ] 170 tests. -28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.01 sec +28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.02 sec test 29 Start 29: GmxAnaTest @@ -63711,7 +63756,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistWorksWithSingleAtoms (3 ms) +29: [ OK ] MindistTest.mindistWorksWithSingleAtoms (1 ms) 29: [ RUN ] MindistTest.mindistWorksWithMultipleAtoms 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63723,7 +63768,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.mindistWorksWithMultipleAtoms (0 ms) +29: [ OK ] MindistTest.mindistWorksWithMultipleAtoms (1 ms) 29: [ RUN ] MindistTest.mindistDoesNotPickUpContacts 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63760,7 +63805,7 @@ 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.ngWorks (0 ms) +29: [ OK ] MindistTest.ngWorks (1 ms) 29: [ RUN ] MindistTest.groupWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63772,7 +63817,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.groupWorks (1 ms) +29: [ OK ] MindistTest.groupWorks (0 ms) 29: [ RUN ] MindistTest.maxDistWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63784,7 +63829,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.maxDistWorks (0 ms) +29: [ OK ] MindistTest.maxDistWorks (1 ms) 29: [ RUN ] MindistTest.noPbcWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63808,7 +63853,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.resPerTimeWorks (0 ms) +29: [ OK ] MindistTest.resPerTimeWorks (1 ms) 29: [ RUN ] MindistTest.matrixWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63820,7 +63865,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 5: 'atoms123' 29: Special case: making distance matrix between all atoms in group atoms123 -29: [ OK ] MindistTest.matrixWorks (1 ms) +29: [ OK ] MindistTest.matrixWorks (0 ms) 29: [----------] 10 tests from MindistTest (8 ms total) 29: 29: [----------] 3 tests from MsdTest @@ -63849,7 +63894,7 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 6.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.twoDimensionalDiffusion (0 ms) +29: [ OK ] MsdTest.twoDimensionalDiffusion (1 ms) 29: [ RUN ] MsdTest.oneDimensionalDiffusion 29: 29: Select a group to calculate mean squared displacement for: @@ -63872,7 +63917,7 @@ 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -40108815 +29: Setting the LD random seed to -152568833 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -63909,14 +63954,14 @@ 29: Fitting from 0.012 to 0.092 ps 29: 29: D[ water] 6.6830 (+/- 0.1079) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolMassWeighted (460 ms) +29: [ OK ] MsdMolTest.diffMolMassWeighted (716 ms) 29: [ RUN ] MsdMolTest.diffMolNonMassWeighted 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolNonMassWeighted.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -404815887 +29: Setting the LD random seed to -8389136 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -63953,14 +63998,14 @@ 29: Fitting from 0.012 to 0.092 ps 29: 29: D[ water] 6.6830 (+/- 0.1079) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolNonMassWeighted (447 ms) +29: [ OK ] MsdMolTest.diffMolNonMassWeighted (740 ms) 29: [ RUN ] MsdMolTest.diffMolSelected 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolSelected.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to 2147339996 +29: Setting the LD random seed to 1333520372 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -63997,8 +64042,8 @@ 29: Fitting from 0.012 to 0.092 ps 29: 29: D[ mol] 7.7624 (+/- 2.9088) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolSelected (443 ms) -29: [----------] 3 tests from MsdMolTest (1350 ms total) +29: [ OK ] MsdMolTest.diffMolSelected (678 ms) +29: [----------] 3 tests from MsdMolTest (2134 ms total) 29: 29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -64008,14 +64053,14 @@ 29: Select a group: trr version: GMX_trn_file (single precision) 29: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (1 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (2 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (1 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -64030,7 +64075,7 @@ 29: Select a group: Reading frames from gro file '', 6 atoms. 29: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (0 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (2 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -64045,13 +64090,13 @@ 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) -29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (7 ms total) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) +29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 27 tests from 5 test cases ran. (1368 ms total) +29: [==========] 27 tests from 5 test cases ran. (2154 ms total) 29: [ PASSED ] 27 tests. -29/54 Test #29: GmxAnaTest .......................... Passed 1.38 sec +29/54 Test #29: GmxAnaTest .......................... Passed 2.17 sec test 30 Start 30: GmxPreprocessTests @@ -64061,7 +64106,7 @@ 30: [----------] Global test environment set-up. 30: [----------] 4 tests from GenconfTest 30: [ RUN ] GenconfTest.nbox_Works -30: [ OK ] GenconfTest.nbox_Works (1 ms) +30: [ OK ] GenconfTest.nbox_Works (0 ms) 30: [ RUN ] GenconfTest.nbox_norenumber_Works 30: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 30: [ RUN ] GenconfTest.nbox_dist_Works @@ -64079,8 +64124,8 @@ 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 -30: [ OK ] GenconfTest.nbox_rot_Works (1 ms) -30: [----------] 4 tests from GenconfTest (3 ms total) +30: [ OK ] GenconfTest.nbox_rot_Works (0 ms) +30: [----------] 4 tests from GenconfTest (2 ms total) 30: 30: [----------] 2 tests from GenionTest 30: [ RUN ] GenionTest.HighConcentrationIonPlacement @@ -64095,7 +64140,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -1090781192 +30: Setting the LD random seed to 796884863 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -64137,7 +64182,7 @@ 30: Will try to add 4 NA ions and 4 CL ions. 30: Select a continuous group of solvent molecules 30: Selected 1: 'Water' -30: [ OK ] GenionTest.HighConcentrationIonPlacement (463 ms) +30: [ OK ] GenionTest.HighConcentrationIonPlacement (700 ms) 30: [ RUN ] GenionTest.NoIonPlacement 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GenionTest_NoIonPlacement_input.mdp]: @@ -64150,7 +64195,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -336760661 +30: Setting the LD random seed to 2096092671 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -64173,8 +64218,8 @@ 30: There are: 1 Other residues 30: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 30: This run will generate roughly 0 Mb of data -30: [ OK ] GenionTest.NoIonPlacement (455 ms) -30: [----------] 2 tests from GenionTest (918 ms total) +30: [ OK ] GenionTest.NoIonPlacement (698 ms) +30: [----------] 2 tests from GenionTest (1398 ms total) 30: 30: [----------] 1 test from GenRestrTest 30: [ RUN ] GenRestrTest.SimpleRestraintsGenerated @@ -64205,7 +64250,7 @@ 30: [ RUN ] PreprocessingAtomTypesTest.AddMultipleTypesWorks 30: [ OK ] PreprocessingAtomTypesTest.AddMultipleTypesWorks (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.CannotAddDuplicateEntry -30: [ OK ] PreprocessingAtomTypesTest.CannotAddDuplicateEntry (0 ms) +30: [ OK ] PreprocessingAtomTypesTest.CannotAddDuplicateEntry (1 ms) 30: [ RUN ] PreprocessingAtomTypesTest.CorrectNameFound 30: [ OK ] PreprocessingAtomTypesTest.CorrectNameFound (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.WrongNameNotFound @@ -64214,7 +64259,7 @@ 30: [ OK ] PreprocessingAtomTypesTest.CorrectNameFromTypeNumber (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.NoNameFromIncorrectTypeNumber 30: [ OK ] PreprocessingAtomTypesTest.NoNameFromIncorrectTypeNumber (0 ms) -30: [----------] 9 tests from PreprocessingAtomTypesTest (0 ms total) +30: [----------] 9 tests from PreprocessingAtomTypesTest (1 ms total) 30: 30: [----------] 10 tests from PreprocessingBondAtomTypeTest 30: [ RUN ] PreprocessingBondAtomTypeTest.EmptyOnCreate @@ -64330,7 +64375,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 30: 30: Output configuration contains 10 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (1 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (2 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -64363,7 +64408,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 30: 30: Output configuration contains 632 atoms in 212 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (7 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (10 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 30: Initialising inter-atomic distances... 30: @@ -64397,7 +64442,7 @@ 30: 30: Output configuration contains 6 atoms in 3 residues 30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (1 ms) -30: [----------] 5 tests from InsertMoleculesTest (12 ms total) +30: [----------] 5 tests from InsertMoleculesTest (16 ms total) 30: 30: [----------] 14 tests from GetIrTest 30: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -64408,27 +64453,27 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (3 ms) +30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (5 ms) 30: [ RUN ] GetIrTest.RejectsNonCommentLineWithNoEquals -30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (4 ms) +30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (6 ms) 30: [ RUN ] GetIrTest.AcceptsKeyWithoutValue 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsKeyWithoutValue_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (2 ms) +30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (3 ms) 30: [ RUN ] GetIrTest.RejectsValueWithoutKey -30: [ OK ] GetIrTest.RejectsValueWithoutKey (4 ms) +30: [ OK ] GetIrTest.RejectsValueWithoutKey (6 ms) 30: [ RUN ] GetIrTest.RejectsEmptyKeyAndEmptyValue -30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (3 ms) +30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (7 ms) 30: [ RUN ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsDefineParametersWithValuesIncludingAssignment_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment (2 ms) +30: [ OK ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment (3 ms) 30: [ RUN ] GetIrTest.AcceptsEmptyLines 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsEmptyLines_input.mdp]: @@ -64442,40 +64487,40 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricField (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricField (3 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldPulsed 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldPulsed_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (3 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldOscillating 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldOscillating_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (3 ms) 30: [ RUN ] GetIrTest.RejectsDuplicateOldAndNewKeys -30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (1 ms) +30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (3 ms) 30: [ RUN ] GetIrTest.AcceptsImplicitSolventNo 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsImplicitSolventNo_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (2 ms) +30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (3 ms) 30: [ RUN ] GetIrTest.RejectsImplicitSolventYes -30: [ OK ] GetIrTest.RejectsImplicitSolventYes (4 ms) +30: [ OK ] GetIrTest.RejectsImplicitSolventYes (5 ms) 30: [ RUN ] GetIrTest.AcceptsMimic 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsMimic_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsMimic (2 ms) -30: [----------] 14 tests from GetIrTest (35 ms total) +30: [ OK ] GetIrTest.AcceptsMimic (3 ms) +30: [----------] 14 tests from GetIrTest (56 ms total) 30: 30: [----------] 5 tests from SolvateTest 30: [ RUN ] SolvateTest.cs_box_Works @@ -64515,7 +64560,7 @@ 30: Density : 1056.36 (g/l) 30: Number of solvent molecules: 47 30: -30: [ OK ] SolvateTest.cs_box_Works (7 ms) +30: [ OK ] SolvateTest.cs_box_Works (11 ms) 30: [ RUN ] SolvateTest.cs_cp_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64555,7 +64600,7 @@ 30: Density : 974.777 (g/l) 30: Number of solvent molecules: 886 30: -30: [ OK ] SolvateTest.cs_cp_Works (41 ms) +30: [ OK ] SolvateTest.cs_cp_Works (69 ms) 30: [ RUN ] SolvateTest.cs_cp_p_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64597,7 +64642,7 @@ 30: 30: Processing topology 30: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_spc-and-methanol.top) -30: [ OK ] SolvateTest.cs_cp_p_Works (42 ms) +30: [ OK ] SolvateTest.cs_cp_p_Works (68 ms) 30: [ RUN ] SolvateTest.shell_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64638,7 +64683,7 @@ 30: Density : 279.3 (g/l) 30: Number of solvent molecules: 252 30: -30: [ OK ] SolvateTest.shell_Works (21 ms) +30: [ OK ] SolvateTest.shell_Works (36 ms) 30: [ RUN ] SolvateTest.update_Topology_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64682,8 +64727,8 @@ 30: Processing topology 30: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -30: [ OK ] SolvateTest.update_Topology_Works (169 ms) -30: [----------] 5 tests from SolvateTest (280 ms total) +30: [ OK ] SolvateTest.update_Topology_Works (283 ms) +30: [----------] 5 tests from SolvateTest (467 ms total) 30: 30: [----------] 1 test from TopDirTests 30: [ RUN ] TopDirTests.NamesArrayHasCorrectSize @@ -64691,9 +64736,9 @@ 30: [----------] 1 test from TopDirTests (0 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 51 tests from 9 test cases ran. (1250 ms total) +30: [==========] 51 tests from 9 test cases ran. (1942 ms total) 30: [ PASSED ] 51 tests. -30/54 Test #30: GmxPreprocessTests .................. Passed 1.26 sec +30/54 Test #30: GmxPreprocessTests .................. Passed 1.96 sec test 31 Start 31: Pdb2gmx1Test @@ -64760,7 +64805,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (54 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (115 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64820,7 +64865,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (59 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (130 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64878,7 +64923,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (53 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (111 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64936,7 +64981,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (48 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64998,7 +65043,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (56 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (106 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65061,7 +65106,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (62 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (123 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65122,7 +65167,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (58 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (108 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65183,7 +65228,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (95 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65242,7 +65287,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (102 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65302,7 +65347,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (59 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (108 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65360,7 +65405,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (53 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (99 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65418,7 +65463,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (48 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (90 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65480,7 +65525,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (55 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (104 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65543,7 +65588,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (62 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (114 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65604,7 +65649,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (57 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (108 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65665,7 +65710,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (96 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65724,7 +65769,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (52 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (100 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65784,7 +65829,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (58 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (109 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65842,7 +65887,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (53 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (100 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65900,7 +65945,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (48 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (98 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65962,7 +66007,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (56 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (124 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -66025,7 +66070,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (62 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (136 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -66086,7 +66131,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (57 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (127 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -66147,13 +66192,13 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (52 ms) -31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (1319 ms total) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (96 ms) +31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (2588 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 24 tests from 1 test case ran. (1319 ms total) +31: [==========] 24 tests from 1 test case ran. (2588 ms total) 31: [ PASSED ] 24 tests. -31/54 Test #31: Pdb2gmx1Test ........................ Passed 1.33 sec +31/54 Test #31: Pdb2gmx1Test ........................ Passed 2.60 sec test 32 Start 32: Pdb2gmx2Test @@ -66235,7 +66280,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (35 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (59 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66310,7 +66355,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (39 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (67 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66383,7 +66428,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (33 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66456,7 +66501,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (31 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (55 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66533,7 +66578,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (34 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (59 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66611,7 +66656,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (40 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (71 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66687,7 +66732,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (35 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (60 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66763,7 +66808,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (32 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66837,7 +66882,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (32 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66912,7 +66957,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (38 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (68 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66985,7 +67030,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (33 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (58 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67058,7 +67103,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (31 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (55 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67135,7 +67180,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (34 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (59 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67213,7 +67258,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (40 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (70 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67289,7 +67334,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (34 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (61 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67365,8 +67410,8 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (33 ms) -32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (555 ms total) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (56 ms) +32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (970 ms total) 32: 32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -67446,7 +67491,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (35 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (63 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67525,7 +67570,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (42 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (90 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67602,7 +67647,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (36 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (78 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67679,7 +67724,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (34 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (71 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67760,7 +67805,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (38 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (64 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67842,7 +67887,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (44 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (76 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67922,7 +67967,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (38 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (64 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68002,7 +68047,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (35 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (61 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68080,7 +68125,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (36 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (62 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68159,7 +68204,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (44 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (73 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68236,7 +68281,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (36 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (63 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68313,7 +68358,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (33 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (58 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68394,7 +68439,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (37 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (63 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68476,7 +68521,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (43 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (81 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68556,7 +68601,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (38 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (83 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68636,13 +68681,13 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (35 ms) -32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (604 ms total) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (76 ms) +32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (1126 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 32 tests from 2 test cases ran. (1159 ms total) +32: [==========] 32 tests from 2 test cases ran. (2096 ms total) 32: [ PASSED ] 32 tests. -32/54 Test #32: Pdb2gmx2Test ........................ Passed 1.17 sec +32/54 Test #32: Pdb2gmx2Test ........................ Passed 2.11 sec test 33 Start 33: Pdb2gmx3Test @@ -68718,7 +68763,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (48 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (86 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68787,7 +68832,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (53 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (96 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68854,7 +68899,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (47 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (84 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68921,7 +68966,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (42 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (75 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68992,7 +69037,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (50 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (89 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -69064,7 +69109,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (56 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (100 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -69134,7 +69179,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (53 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (93 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -69204,8 +69249,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (45 ms) -33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (396 ms total) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (92 ms) +33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (715 ms total) 33: 33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -69282,7 +69327,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (47 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (103 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69358,7 +69403,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (52 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (117 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69432,7 +69477,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (47 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (90 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69506,7 +69551,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (43 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (77 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69584,7 +69629,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (50 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (95 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69663,7 +69708,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (56 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (124 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69740,7 +69785,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (51 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (115 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69817,8 +69862,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (47 ms) -33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (393 ms total) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (102 ms) +33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (823 ms total) 33: 33: [----------] 8 tests from ChainSep/Pdb2gmxTest 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -69906,7 +69951,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (47 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (105 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70041,7 +70086,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (34 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (73 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70127,7 +70172,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (48 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (101 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70262,7 +70307,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (33 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (60 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70352,7 +70397,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (48 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (88 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70513,7 +70558,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (33 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (58 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70595,7 +70640,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (47 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (87 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70703,8 +70748,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (35 ms) -33: [----------] 8 tests from ChainSep/Pdb2gmxTest (326 ms total) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (63 ms) +33: [----------] 8 tests from ChainSep/Pdb2gmxTest (635 ms total) 33: 33: [----------] 4 tests from ChainChanges/Pdb2gmxTest 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -70805,7 +70850,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (23 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (39 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70904,7 +70949,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (22 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (39 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -71003,7 +71048,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (22 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (40 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -71102,13 +71147,13 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (23 ms) -33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (90 ms total) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (39 ms) +33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (157 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 28 tests from 4 test cases ran. (1205 ms total) +33: [==========] 28 tests from 4 test cases ran. (2330 ms total) 33: [ PASSED ] 28 tests. -33/54 Test #33: Pdb2gmx3Test ........................ Passed 1.22 sec +33/54 Test #33: Pdb2gmx3Test ........................ Passed 2.34 sec test 34 Start 34: CorrelationsTest @@ -71118,26 +71163,26 @@ 34: [----------] Global test environment set-up. 34: [----------] 10 tests from AutocorrTest 34: [ RUN ] AutocorrTest.EacNormal -34: [ OK ] AutocorrTest.EacNormal (30 ms) +34: [ OK ] AutocorrTest.EacNormal (45 ms) 34: [ RUN ] AutocorrTest.EacNoNormalize -34: [ OK ] AutocorrTest.EacNoNormalize (22 ms) +34: [ OK ] AutocorrTest.EacNoNormalize (25 ms) 34: [ RUN ] AutocorrTest.EacCos -34: [ OK ] AutocorrTest.EacCos (54 ms) +34: [ OK ] AutocorrTest.EacCos (52 ms) 34: [ RUN ] AutocorrTest.EacVector -34: [ OK ] AutocorrTest.EacVector (61 ms) +34: [ OK ] AutocorrTest.EacVector (71 ms) 34: [ RUN ] AutocorrTest.EacRcross -34: [ OK ] AutocorrTest.EacRcross (1 ms) +34: [ OK ] AutocorrTest.EacRcross (2 ms) 34: [ RUN ] AutocorrTest.EacP0 -34: [ OK ] AutocorrTest.EacP0 (61 ms) +34: [ OK ] AutocorrTest.EacP0 (79 ms) 34: [ RUN ] AutocorrTest.EacP1 -34: [ OK ] AutocorrTest.EacP1 (54 ms) +34: [ OK ] AutocorrTest.EacP1 (75 ms) 34: [ RUN ] AutocorrTest.EacP2 -34: [ OK ] AutocorrTest.EacP2 (110 ms) +34: [ OK ] AutocorrTest.EacP2 (173 ms) 34: [ RUN ] AutocorrTest.EacP3 -34: [ OK ] AutocorrTest.EacP3 (3 ms) +34: [ OK ] AutocorrTest.EacP3 (6 ms) 34: [ RUN ] AutocorrTest.EacP4 -34: [ OK ] AutocorrTest.EacP4 (55 ms) -34: [----------] 10 tests from AutocorrTest (455 ms total) +34: [ OK ] AutocorrTest.EacP4 (84 ms) +34: [----------] 10 tests from AutocorrTest (612 ms total) 34: 34: [----------] 1 test from ManyAutocorrelationTest 34: [ RUN ] ManyAutocorrelationTest.Empty @@ -71148,29 +71193,29 @@ 34: [ RUN ] ExpfitTest.EffnEXP1 34: [ OK ] ExpfitTest.EffnEXP1 (2 ms) 34: [ RUN ] ExpfitTest.EffnEXP2 -34: [ OK ] ExpfitTest.EffnEXP2 (1 ms) +34: [ OK ] ExpfitTest.EffnEXP2 (3 ms) 34: [ RUN ] ExpfitTest.EffnEXPEXP -34: [ OK ] ExpfitTest.EffnEXPEXP (3 ms) +34: [ OK ] ExpfitTest.EffnEXPEXP (5 ms) 34: [ RUN ] ExpfitTest.EffnEXP5 -34: [ OK ] ExpfitTest.EffnEXP5 (10 ms) +34: [ OK ] ExpfitTest.EffnEXP5 (15 ms) 34: [ RUN ] ExpfitTest.EffnEXP7 -34: [ OK ] ExpfitTest.EffnEXP7 (7 ms) +34: [ OK ] ExpfitTest.EffnEXP7 (12 ms) 34: [ RUN ] ExpfitTest.EffnEXP9 -34: [ OK ] ExpfitTest.EffnEXP9 (38 ms) +34: [ OK ] ExpfitTest.EffnEXP9 (64 ms) 34: [ RUN ] ExpfitTest.EffnERF -34: [ OK ] ExpfitTest.EffnERF (3 ms) +34: [ OK ] ExpfitTest.EffnERF (7 ms) 34: [ RUN ] ExpfitTest.EffnERREST 34: [ OK ] ExpfitTest.EffnERREST (1 ms) 34: [ RUN ] ExpfitTest.EffnVAC -34: [ OK ] ExpfitTest.EffnVAC (12 ms) +34: [ OK ] ExpfitTest.EffnVAC (20 ms) 34: [ RUN ] ExpfitTest.EffnPRES -34: [ OK ] ExpfitTest.EffnPRES (24 ms) -34: [----------] 10 tests from ExpfitTest (102 ms total) +34: [ OK ] ExpfitTest.EffnPRES (50 ms) +34: [----------] 10 tests from ExpfitTest (179 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 21 tests from 3 test cases ran. (564 ms total) +34: [==========] 21 tests from 3 test cases ran. (798 ms total) 34: [ PASSED ] 21 tests. -34/54 Test #34: CorrelationsTest .................... Passed 0.57 sec +34/54 Test #34: CorrelationsTest .................... Passed 0.81 sec test 35 Start 35: AnalysisDataUnitTests @@ -71182,10 +71227,10 @@ 35: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 35: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 35: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules -35: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms) +35: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) 35: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 35: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) -35: [----------] 3 tests from AnalysisDataInitializationTest (0 ms total) +35: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly @@ -71195,24 +71240,24 @@ 35: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/0 (2 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/0 (3 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames @@ -71220,20 +71265,20 @@ 35: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/1 (3 ms total) +35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/1 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks @@ -71241,33 +71286,33 @@ 35: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/2 (2 ms total) +35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/2 (5 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/3 (3 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/3 (4 ms total) 35: 35: [----------] 4 tests from AnalysisArrayDataTest 35: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly -35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisArrayDataTest.StorageWorks -35: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) +35: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 35: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount @@ -71276,25 +71321,25 @@ 35: 35: [----------] 6 tests from AverageModuleTest 35: [ RUN ] AverageModuleTest.BasicTest -35: [ OK ] AverageModuleTest.BasicTest (0 ms) +35: [ OK ] AverageModuleTest.BasicTest (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipointData 35: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipleDataSets -35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [ RUN ] AverageModuleTest.HandlesDataSetAveraging -35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) +35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeXAxis 35: [ OK ] AverageModuleTest.CanCustomizeXAxis (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -35: [----------] 6 tests from AverageModuleTest (3 ms total) +35: [----------] 6 tests from AverageModuleTest (5 ms total) 35: 35: [----------] 2 tests from FrameAverageModuleTest 35: [ RUN ] FrameAverageModuleTest.BasicTest -35: [ OK ] FrameAverageModuleTest.BasicTest (0 ms) +35: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 35: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 2 tests from FrameAverageModuleTest (1 ms total) +35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [----------] 2 tests from FrameAverageModuleTest (2 ms total) 35: 35: [----------] 7 tests from AnalysisHistogramSettingsTest 35: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins @@ -71317,8 +71362,8 @@ 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (0 ms) -35: [----------] 2 tests from SimpleHistogramModuleTest (1 ms total) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) +35: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) 35: 35: [----------] 3 tests from WeightedHistogramModuleTest 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly @@ -71331,23 +71376,23 @@ 35: 35: [----------] 3 tests from BinAverageModuleTest 35: [ RUN ] BinAverageModuleTest.ComputesCorrectly -35: [ OK ] BinAverageModuleTest.ComputesCorrectly (0 ms) +35: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 35: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (0 ms) -35: [----------] 3 tests from BinAverageModuleTest (1 ms total) +35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) +35: [----------] 3 tests from BinAverageModuleTest (3 ms total) 35: 35: [----------] 4 tests from AbstractAverageHistogramTest 35: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (0 ms) +35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) 35: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins -35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (0 ms) -35: [----------] 4 tests from AbstractAverageHistogramTest (2 ms total) +35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) +35: [----------] 4 tests from AbstractAverageHistogramTest (5 ms total) 35: 35: [----------] 3 tests from LifetimeModuleTest 35: [ RUN ] LifetimeModuleTest.BasicTest @@ -71359,9 +71404,9 @@ 35: [----------] 3 tests from LifetimeModuleTest (2 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 69 tests from 14 test cases ran. (25 ms total) +35: [==========] 69 tests from 14 test cases ran. (40 ms total) 35: [ PASSED ] 69 tests. -35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.04 sec +35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.06 sec test 36 Start 36: CoordinateIOTests @@ -71379,8 +71424,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (4 ms) -36: [----------] 1 test from OutputSelectorDeathTest (4 ms total) +36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (6 ms) +36: [----------] 1 test from OutputSelectorDeathTest (6 ms total) 36: 36: [----------] 5 tests from TrajectoryFrameWriterTest 36: [ RUN ] TrajectoryFrameWriterTest.RejectsWrongFiletype @@ -71392,7 +71437,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (3 ms) +36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (5 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71402,7 +71447,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (3 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (4 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71412,7 +71457,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (2 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (5 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71430,10 +71475,10 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (6 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (9 ms) 36: [ RUN ] TrajectoryFrameWriterTest.TNGOutputWorks 36: [ OK ] TrajectoryFrameWriterTest.TNGOutputWorks (0 ms) -36: [----------] 5 tests from TrajectoryFrameWriterTest (14 ms total) +36: [----------] 5 tests from TrajectoryFrameWriterTest (23 ms total) 36: 36: [----------] 5 tests from OutputAdapterContainer 36: [ RUN ] OutputAdapterContainer.MakeEmpty @@ -71471,7 +71516,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.RemovesExistingAtoms (3 ms) +36: [ OK ] SetAtomsTest.RemovesExistingAtoms (4 ms) 36: [ RUN ] SetAtomsTest.AddsNewAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71481,7 +71526,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.AddsNewAtoms (2 ms) +36: [ OK ] SetAtomsTest.AddsNewAtoms (5 ms) 36: [ RUN ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71491,7 +71536,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (3 ms) +36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (4 ms) 36: [ RUN ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71501,7 +71546,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (3 ms) +36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (5 ms) 36: [ RUN ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71511,8 +71556,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (2 ms) -36: [----------] 5 tests from SetAtomsTest (13 ms total) +36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (4 ms) +36: [----------] 5 tests from SetAtomsTest (23 ms total) 36: 36: [----------] 2 tests from SetBothTimeTest 36: [ RUN ] SetBothTimeTest.StartTimeZeroWorks @@ -71543,7 +71588,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (2 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71553,7 +71598,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (5 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71563,7 +71608,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71573,7 +71618,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (2 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (5 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71583,7 +71628,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71593,8 +71638,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (3 ms) -36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (16 ms total) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (5 ms) +36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (27 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/0 @@ -71606,7 +71651,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71616,7 +71661,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (2 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (5 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71626,17 +71671,17 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (3 ms) -36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (8 ms total) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (4 ms) +36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (13 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 -36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 (0 ms) +36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 (1 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 (0 ms) -36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (0 ms total) +36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (1 ms total) 36: 36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/0 @@ -71656,7 +71701,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (6 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71674,7 +71719,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71692,7 +71737,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (6 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (10 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71710,8 +71755,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (5 ms) -36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (22 ms total) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (9 ms) +36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (37 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/0 @@ -71723,7 +71768,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71733,7 +71778,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (3 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (5 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71743,17 +71788,17 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (2 ms) -36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (8 ms total) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (4 ms) +36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (14 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/1 -36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/1 (0 ms) +36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/1 (1 ms) 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/2 (0 ms) -36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles (0 ms total) +36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles (1 ms total) 36: 36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/0 @@ -71765,7 +71810,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71775,8 +71820,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (3 ms) -36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (6 ms total) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (5 ms) +36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (9 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 @@ -71799,7 +71844,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71809,8 +71854,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (2 ms) -36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (5 ms total) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (4 ms) +36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (9 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 @@ -71833,7 +71878,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (2 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71843,7 +71888,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (3 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (5 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71853,7 +71898,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (3 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (4 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71863,13 +71908,13 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (2 ms) -36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (10 ms total) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (5 ms) +36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (18 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 64 tests from 19 test cases ran. (108 ms total) +36: [==========] 64 tests from 19 test cases ran. (184 ms total) 36: [ PASSED ] 64 tests. -36/54 Test #36: CoordinateIOTests ................... Passed 0.12 sec +36/54 Test #36: CoordinateIOTests ................... Passed 0.20 sec test 37 Start 37: TrajectoryAnalysisUnitTests @@ -71895,7 +71940,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 1, cmax: 6, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (1 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (2 ms) 37: [ RUN ] ClustsizeTest.MolDefaultCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -71904,7 +71949,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (2 ms) +37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (3 ms) 37: [ RUN ] ClustsizeTest.MolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -71913,7 +71958,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 1, cmax: 6, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (1 ms) +37: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (25 ms) 37: [ RUN ] ClustsizeTest.MolCSize 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -71923,11 +71968,11 @@ 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 37: 50%100%[ OK ] ClustsizeTest.MolCSize (2 ms) -37: [----------] 5 tests from ClustsizeTest (8 ms total) +37: [----------] 5 tests from ClustsizeTest (34 ms total) 37: 37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (0 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -71946,7 +71991,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (2 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (3 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -71963,10 +72008,10 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (2 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (3 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) -37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (5 ms total) +37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (8 ms total) 37: 37: [----------] 11 tests from AngleModuleTest 37: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -71985,7 +72030,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesSimpleAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesSimpleAngles (3 ms) 37: [ RUN ] AngleModuleTest.ComputesDihedrals 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72002,7 +72047,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesDihedrals (2 ms) +37: [ OK ] AngleModuleTest.ComputesDihedrals (3 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72019,7 +72064,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72036,7 +72081,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (3 ms) 37: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72053,7 +72098,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72070,7 +72115,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (3 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 37: Reading frames from gro file 'Test system for different angles', 33 atoms. 37: Reading frame 0 time 0.000 @@ -72089,7 +72134,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesMultipleAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72123,7 +72168,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesDynamicSelections (2 ms) +37: [ OK ] AngleModuleTest.HandlesDynamicSelections (3 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72140,7 +72185,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (2 ms) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (3 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72157,8 +72202,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (2 ms) -37: [----------] 11 tests from AngleModuleTest (23 ms total) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (4 ms) +37: [----------] 11 tests from AngleModuleTest (38 ms total) 37: 37: [----------] 4 tests from ConvertTrjModuleTest 37: [ RUN ] ConvertTrjModuleTest.WritesNormalOutput @@ -72166,20 +72211,20 @@ 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (8 ms) +37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (11 ms) 37: [ RUN ] ConvertTrjModuleTest.WritesAtomSubset 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (7 ms) +37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (11 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomAdding 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading frames from pdb file Reading frame 0 time 0.000 '', 24 atoms 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (1 ms) +37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (2 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomsAndSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -72187,7 +72232,7 @@ 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 37: [ OK ] ConvertTrjModuleTest.WorksWithAtomsAndSelection (1 ms) -37: [----------] 4 tests from ConvertTrjModuleTest (18 ms total) +37: [----------] 4 tests from ConvertTrjModuleTest (25 ms total) 37: 37: [----------] 3 tests from DistanceModuleTest 37: [ RUN ] DistanceModuleTest.ComputesDistances @@ -72210,7 +72255,7 @@ 37: Number of samples: 5 37: Average distance: 1.43246 nm 37: Standard deviation: 0.96700 nm -37: [ OK ] DistanceModuleTest.ComputesDistances (2 ms) +37: [ OK ] DistanceModuleTest.ComputesDistances (5 ms) 37: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72235,7 +72280,7 @@ 37: Number of samples: 4 37: Average distance: 1.81066 nm 37: Standard deviation: 0.79289 nm -37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (3 ms) +37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (4 ms) 37: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72256,8 +72301,8 @@ 37: Number of samples: 3 37: Average distance: 1.72076 nm 37: Standard deviation: 1.24839 nm -37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (2 ms) -37: [----------] 3 tests from DistanceModuleTest (7 ms total) +37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (5 ms) +37: [----------] 3 tests from DistanceModuleTest (14 ms total) 37: 37: [----------] 2 tests from ExtractClusterModuleTest 37: [ RUN ] ExtractClusterModuleTest.WorksWithAllAtoms @@ -72270,8 +72315,8 @@ 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 -37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (2 ms) -37: [----------] 2 tests from ExtractClusterModuleTest (4 ms total) +37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (3 ms) +37: [----------] 2 tests from ExtractClusterModuleTest (5 ms total) 37: 37: [----------] 2 tests from FreeVolumeModuleTest 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -72335,7 +72380,7 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 37: Fractional free volume 0.194 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (140 ms) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (241 ms) 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -72387,8 +72432,8 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 37: Fractional free volume 0.200 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (141 ms) -37: [----------] 2 tests from FreeVolumeModuleTest (281 ms total) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (242 ms) +37: [----------] 2 tests from FreeVolumeModuleTest (483 ms total) 37: 37: [----------] 9 tests from PairDistanceModuleTest 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -72407,7 +72452,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72424,7 +72469,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72441,7 +72486,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72458,7 +72503,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72475,7 +72520,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72492,7 +72537,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72509,7 +72554,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (4 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72526,7 +72571,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (2 ms) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (3 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72543,8 +72588,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (2 ms) -37: [----------] 9 tests from PairDistanceModuleTest (18 ms total) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (3 ms) +37: [----------] 9 tests from PairDistanceModuleTest (30 ms total) 37: 37: [----------] 5 tests from RdfModuleTest 37: [ RUN ] RdfModuleTest.BasicTest @@ -72563,12 +72608,12 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.BasicTest (22 ms) +37: [ OK ] RdfModuleTest.BasicTest (33 ms) 37: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 37: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (14 ms) +37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (22 ms) 37: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72585,7 +72630,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (22 ms) +37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (33 ms) 37: [ RUN ] RdfModuleTest.CalculatesSurf 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72602,7 +72647,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesSurf (12 ms) +37: [ OK ] RdfModuleTest.CalculatesSurf (19 ms) 37: [ RUN ] RdfModuleTest.CalculatesXY 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72619,8 +72664,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesXY (24 ms) -37: [----------] 5 tests from RdfModuleTest (94 ms total) +37: [ OK ] RdfModuleTest.CalculatesXY (38 ms) +37: [----------] 5 tests from RdfModuleTest (145 ms total) 37: 37: [----------] 5 tests from SasaModuleTest 37: [ RUN ] SasaModuleTest.BasicTest @@ -72667,7 +72712,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.BasicTest (8 ms) +37: [ OK ] SasaModuleTest.BasicTest (14 ms) 37: [ RUN ] SasaModuleTest.HandlesSelectedResidues 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72712,7 +72757,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesSelectedResidues (6 ms) +37: [ OK ] SasaModuleTest.HandlesSelectedResidues (9 ms) 37: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72757,7 +72802,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (5 ms) +37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (9 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72802,7 +72847,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (6 ms) +37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (10 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72847,8 +72892,8 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (7 ms) -37: [----------] 5 tests from SasaModuleTest (33 ms total) +37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (11 ms) +37: [----------] 5 tests from SasaModuleTest (54 ms total) 37: 37: [----------] 8 tests from SelectModuleTest 37: [ RUN ] SelectModuleTest.BasicTest @@ -72869,7 +72914,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.BasicTest (3 ms) +37: [ OK ] SelectModuleTest.BasicTest (5 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72888,7 +72933,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (2 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (5 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72907,7 +72952,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (3 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (4 ms) 37: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72926,7 +72971,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (3 ms) +37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (5 ms) 37: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72945,7 +72990,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (3 ms) +37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (5 ms) 37: [ RUN ] SelectModuleTest.NormalizesSizes 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72962,7 +73007,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.NormalizesSizes (2 ms) +37: [ OK ] SelectModuleTest.NormalizesSizes (3 ms) 37: [ RUN ] SelectModuleTest.WritesResidueNumbers 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72979,7 +73024,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueNumbers (2 ms) +37: [ OK ] SelectModuleTest.WritesResidueNumbers (3 ms) 37: [ RUN ] SelectModuleTest.WritesResidueIndices 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72996,31 +73041,31 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueIndices (2 ms) -37: [----------] 8 tests from SelectModuleTest (21 ms total) +37: [ OK ] SelectModuleTest.WritesResidueIndices (3 ms) +37: [----------] 8 tests from SelectModuleTest (33 ms total) 37: 37: [----------] 10 tests from SurfaceAreaTest 37: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 37: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPoints -37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (1 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (3 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius -37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (3 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints12 37: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints32 -37: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints32 (1 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints42 37: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints122 -37: [ OK ] SurfaceAreaTest.SurfacePoints122 (0 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100Points 37: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC -37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (2 ms) +37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (3 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (2 ms) -37: [----------] 10 tests from SurfaceAreaTest (9 ms total) +37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (3 ms) +37: [----------] 10 tests from SurfaceAreaTest (15 ms total) 37: 37: [----------] 4 tests from TopologyInformation 37: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -73034,7 +73079,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithGroFile (3 ms) +37: [ OK ] TopologyInformation.WorksWithGroFile (5 ms) 37: [ RUN ] TopologyInformation.WorksWithPdbFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -73044,14 +73089,14 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithPdbFile (3 ms) +37: [ OK ] TopologyInformation.WorksWithPdbFile (5 ms) 37: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 37: 37: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp]: 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -536879160 +37: Setting the LD random seed to -174116877 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -73085,8 +73130,8 @@ 37: There are: 10 Protein residues 37: Analysing Protein... 37: This run will generate roughly 0 Mb of data -37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (505 ms) -37: [----------] 4 tests from TopologyInformation (511 ms total) +37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (744 ms) +37: [----------] 4 tests from TopologyInformation (754 ms total) 37: 37: [----------] 4 tests from TrajectoryModuleTest 37: [ RUN ] TrajectoryModuleTest.BasicTest @@ -73107,7 +73152,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.BasicTest (2 ms) +37: [ OK ] TrajectoryModuleTest.BasicTest (4 ms) 37: [ RUN ] TrajectoryModuleTest.PlotsXOnly 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -73126,7 +73171,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.PlotsXOnly (3 ms) +37: [ OK ] TrajectoryModuleTest.PlotsXOnly (4 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -73145,7 +73190,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (2 ms) +37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (3 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoForces 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -73164,21 +73209,21 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoForces (2 ms) -37: [----------] 4 tests from TrajectoryModuleTest (9 ms total) +37: [ OK ] TrajectoryModuleTest.HandlesNoForces (3 ms) +37: [----------] 4 tests from TrajectoryModuleTest (14 ms total) 37: 37: [----------] 5 tests from UnionFinderTest 37: [ RUN ] UnionFinderTest.WorksEmpty 37: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 37: [ RUN ] UnionFinderTest.BasicMerges -37: [ OK ] UnionFinderTest.BasicMerges (0 ms) +37: [ OK ] UnionFinderTest.BasicMerges (1 ms) 37: [ RUN ] UnionFinderTest.LargerMerges 37: [ OK ] UnionFinderTest.LargerMerges (0 ms) 37: [ RUN ] UnionFinderTest.LongRightMerge 37: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 37: [ RUN ] UnionFinderTest.LongLeftMerge 37: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) -37: [----------] 5 tests from UnionFinderTest (0 ms total) +37: [----------] 5 tests from UnionFinderTest (1 ms total) 37: 37: [----------] 1 test from MappedUnionFinderTest 37: [ RUN ] MappedUnionFinderTest.BasicMerges @@ -73186,9 +73231,9 @@ 37: [----------] 1 test from MappedUnionFinderTest (0 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 82 tests from 16 test cases ran. (1041 ms total) +37: [==========] 82 tests from 16 test cases ran. (1653 ms total) 37: [ PASSED ] 82 tests. -37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.05 sec +37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.67 sec test 38 Start 38: EnergyAnalysisUnitTests @@ -73205,8 +73250,8 @@ 38: 38: 38: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -38: [ OK ] DhdlTest.ExtractDhdl (7 ms) -38: [----------] 1 test from DhdlTest (7 ms total) +38: [ OK ] DhdlTest.ExtractDhdl (9 ms) +38: [----------] 1 test from DhdlTest (10 ms total) 38: 38: [----------] 1 test from OriresTest 38: [ RUN ] OriresTest.ExtractOrires @@ -73217,8 +73262,8 @@ 38: End your selection with 0 38: Selecting all 7 orientation restraints 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -38: [ OK ] OriresTest.ExtractOrires (8 ms) -38: [----------] 1 test from OriresTest (8 ms total) +38: [ OK ] OriresTest.ExtractOrires (12 ms) +38: [----------] 1 test from OriresTest (12 ms total) 38: 38: [----------] 3 tests from EnergyTest 38: [ RUN ] EnergyTest.ExtractEnergy @@ -73249,7 +73294,7 @@ 38: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 38: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 38: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) -38: [ OK ] EnergyTest.ExtractEnergy (2 ms) +38: [ OK ] EnergyTest.ExtractEnergy (3 ms) 38: [ RUN ] EnergyTest.ExtractEnergyByNumber 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: @@ -73308,8 +73353,8 @@ 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 38: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -38: [ OK ] EnergyTest.ExtractEnergyMixed (2 ms) -38: [----------] 3 tests from EnergyTest (6 ms total) +38: [ OK ] EnergyTest.ExtractEnergyMixed (3 ms) +38: [----------] 3 tests from EnergyTest (10 ms total) 38: 38: [----------] 2 tests from ViscosityTest 38: [ RUN ] ViscosityTest.EinsteinViscosity @@ -73333,7 +73378,7 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosity (40 ms) +38: [ OK ] ViscosityTest.EinsteinViscosity (75 ms) 38: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -73355,13 +73400,13 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (38 ms) -38: [----------] 2 tests from ViscosityTest (78 ms total) +38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (48 ms) +38: [----------] 2 tests from ViscosityTest (123 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 7 tests from 4 test cases ran. (99 ms total) +38: [==========] 7 tests from 4 test cases ran. (155 ms total) 38: [ PASSED ] 7 tests. -38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.11 sec +38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.17 sec test 39 Start 39: ToolUnitTests @@ -73375,7 +73420,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -218243329 +39: Setting the LD random seed to -1838625 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -73421,7 +73466,7 @@ 39: comm-mode = Linear 39: nstcomm = 100 39: bd-fric = 0 -39: ld-seed = -218243329 +39: ld-seed = -1838625 39: emtol = 10 39: emstep = 0.01 39: niter = 20 @@ -76338,12 +76383,12 @@ 39: Compressed X: 156 (total 156 atoms) 39: Or. Res. Fit: 156 (total 156 atoms) 39: QMMM : 156 (total 156 atoms) -39: [ OK ] DumpTest.WorksWithTpr (11 ms) +39: [ OK ] DumpTest.WorksWithTpr (9 ms) 39: [ RUN ] DumpTest.WorksWithTprAndMdpWriting 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: [ OK ] DumpTest.WorksWithTprAndMdpWriting (1 ms) -39: [----------] 2 tests from DumpTest (12 ms total) +39: [----------] 2 tests from DumpTest (10 ms total) 39: 39: [----------] 4 tests from ReportMethodsTest 39: @@ -76351,7 +76396,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -145803013 +39: Setting the LD random seed to -811336741 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -76384,12 +76429,12 @@ 39: Analysing Protein... 39: This run will generate roughly 0 Mb of data 39: [ RUN ] ReportMethodsTest.WritesCorrectHeadersFormated -39: [ OK ] ReportMethodsTest.WritesCorrectHeadersFormated (1 ms) +39: [ OK ] ReportMethodsTest.WritesCorrectHeadersFormated (0 ms) 39: [ RUN ] ReportMethodsTest.WritesCorrectHeadersUnformatted 39: [ OK ] ReportMethodsTest.WritesCorrectHeadersUnformatted (0 ms) 39: [ RUN ] ReportMethodsTest.WritesCorrectInformation 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/ReportMethodsTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) -39: [ OK ] ReportMethodsTest.WritesCorrectInformation (0 ms) +39: [ OK ] ReportMethodsTest.WritesCorrectInformation (1 ms) 39: [ RUN ] ReportMethodsTest.ToolEndToEndTest 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/ReportMethodsTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: section: Methods @@ -76417,7 +76462,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (3 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (6 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76430,7 +76475,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (3 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (6 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76441,7 +76486,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (2 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (5 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76455,7 +76500,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (2 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (6 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76469,7 +76514,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (2 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (5 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76480,8 +76525,8 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (14 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (5 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (33 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -76507,7 +76552,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (2 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -76532,7 +76577,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -76546,7 +76591,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -76557,13 +76602,13 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (2 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (5 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 18 tests from 4 test cases ran. (1028 ms total) +39: [==========] 18 tests from 4 test cases ran. (1566 ms total) 39: [ PASSED ] 18 tests. -39/54 Test #39: ToolUnitTests ....................... Passed 1.04 sec +39/54 Test #39: ToolUnitTests ....................... Passed 1.58 sec test 40 Start 40: FileIOTests @@ -76573,10 +76618,10 @@ 40: [----------] Global test environment set-up. 40: [----------] 2 tests from FileMD5Test 40: [ RUN ] FileMD5Test.CanComputeMD5 -40: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) +40: [ OK ] FileMD5Test.CanComputeMD5 (2 ms) 40: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 40: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -40: [----------] 2 tests from FileMD5Test (1 ms total) +40: [----------] 2 tests from FileMD5Test (2 ms total) 40: 40: [----------] 3 tests from MrcSerializer 40: [ RUN ] MrcSerializer.DefaultHeaderValuesAreSet @@ -76584,8 +76629,8 @@ 40: [ RUN ] MrcSerializer.DefaultHeaderHasRightSerialSize 40: [ OK ] MrcSerializer.DefaultHeaderHasRightSerialSize (0 ms) 40: [ RUN ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip -40: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (0 ms) -40: [----------] 3 tests from MrcSerializer (0 ms total) +40: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (1 ms) +40: [----------] 3 tests from MrcSerializer (1 ms total) 40: 40: [----------] 4 tests from MrcDensityMap 40: [ RUN ] MrcDensityMap.RoundTripIsIdempotent @@ -76595,8 +76640,8 @@ 40: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 40: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 40: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) -40: [----------] 4 tests from MrcDensityMap (2 ms total) +40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (2 ms) +40: [----------] 4 tests from MrcDensityMap (3 ms total) 40: 40: [----------] 8 tests from MrcDensityMapHeaderTest 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -76670,8 +76715,8 @@ 40: 40: [----------] 1 test from FileIOXdrSerializerTest 40: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect -40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (1 ms) -40: [----------] 1 test from FileIOXdrSerializerTest (1 ms total) +40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (0 ms) +40: [----------] 1 test from FileIOXdrSerializerTest (0 ms total) 40: 40: [----------] 2 tests from TngTest 40: [ RUN ] TngTest.CanOpenTngFile @@ -76680,7 +76725,7 @@ 40: [ OK ] TngTest.CanOpenTngFile (0 ms) 40: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 40: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -40: [----------] 2 tests from TngTest (0 ms total) +40: [----------] 2 tests from TngTest (1 ms total) 40: 40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 @@ -76688,13 +76733,13 @@ 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (1 ms total) +40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 33 tests from 8 test cases ran. (5 ms total) +40: [==========] 33 tests from 8 test cases ran. (9 ms total) 40: [ PASSED ] 33 tests. 40/54 Test #40: FileIOTests ......................... Passed 0.02 sec test 41 @@ -76713,7 +76758,7 @@ 41: [ RUN ] IndexBlockTest.CreatesUnknownBlock 41: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 41: [ RUN ] IndexBlockTest.CreatesAtomBlock -41: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) +41: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 41: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology @@ -76740,11 +76785,11 @@ 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -41: [----------] 15 tests from IndexBlockTest (0 ms total) +41: [----------] 15 tests from IndexBlockTest (2 ms total) 41: 41: [----------] 11 tests from IndexMapTest 41: [ RUN ] IndexMapTest.InitializesAtomBlock -41: [ OK ] IndexMapTest.InitializesAtomBlock (1 ms) +41: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 41: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle @@ -76752,7 +76797,7 @@ 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 41: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule -41: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (1 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 41: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 41: [ RUN ] IndexMapTest.InitializesMoleculeBlock @@ -76774,27 +76819,27 @@ 41: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (0 ms) 41: [ RUN ] IndexGroupsAndNamesTest.groupIndicesCorrect 41: [ OK ] IndexGroupsAndNamesTest.groupIndicesCorrect (0 ms) -41: [----------] 3 tests from IndexGroupsAndNamesTest (0 ms total) +41: [----------] 3 tests from IndexGroupsAndNamesTest (1 ms total) 41: 41: [----------] 15 tests from NeighborhoodSearchTest 41: [ RUN ] NeighborhoodSearchTest.SimpleSearch -41: [ OK ] NeighborhoodSearchTest.SimpleSearch (13 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearch (18 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (13 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (20 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchBox -41: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchBox (4 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (8 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (12 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (8 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (4 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 41: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (34 ms) +41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (59 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 41: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -76804,10 +76849,10 @@ 41: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 41: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -41: [----------] 15 tests from NeighborhoodSearchTest (83 ms total) +41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (2 ms) +41: [----------] 15 tests from NeighborhoodSearchTest (134 ms total) 41: 41: [----------] 12 tests from PositionCalculationTest 41: [ RUN ] PositionCalculationTest.ComputesAtomPositions @@ -76815,50 +76860,50 @@ 41: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions -41: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) +41: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions -41: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) +41: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 41: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) +41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionMask 41: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) +41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations -41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) +41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) 41: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -41: [----------] 12 tests from PositionCalculationTest (2 ms total) +41: [----------] 12 tests from PositionCalculationTest (3 ms total) 41: 41: [----------] 29 tests from SelectionCollectionTest 41: [ RUN ] SelectionCollectionTest.HandlesNoSelections 41: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 41: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 @@ -76868,13 +76913,13 @@ 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed -41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes @@ -76886,16 +76931,16 @@ 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 -41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets -41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -41: [----------] 29 tests from SelectionCollectionTest (7 ms total) +41: [----------] 29 tests from SelectionCollectionTest (10 ms total) 41: 41: [----------] 14 tests from SelectionCollectionInteractiveTest 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput @@ -76903,11 +76948,11 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 41: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus @@ -76917,16 +76962,16 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline -41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) -41: [----------] 14 tests from SelectionCollectionInteractiveTest (5 ms total) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) +41: [----------] 14 tests from SelectionCollectionInteractiveTest (7 ms total) 41: 41: [----------] 66 tests from SelectionCollectionDataTest 41: [ RUN ] SelectionCollectionDataTest.HandlesAllNone @@ -76938,7 +76983,7 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 41: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname @@ -76948,11 +76993,11 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesChain 41: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMass -41: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCharge -41: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc -41: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy @@ -76962,21 +77007,21 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesResname 41: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (5 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier @@ -76990,11 +77035,11 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames -41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed @@ -77002,7 +77047,7 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges @@ -77012,105 +77057,105 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 41: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean -41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 41: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables -41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -41: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -41: [----------] 66 tests from SelectionCollectionDataTest (38 ms total) +41: [----------] 66 tests from SelectionCollectionDataTest (61 ms total) 41: 41: [----------] 17 tests from SelectionOptionTest 41: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) +41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired -41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) +41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired -41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) +41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptySelections 41: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 41: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelections -41: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelections -41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 41: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesAdjuster -41: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) +41: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection -41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms) +41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 41: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 41: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -41: [----------] 17 tests from SelectionOptionTest (3 ms total) +41: [----------] 17 tests from SelectionOptionTest (6 ms total) 41: 41: [----------] 9 tests from SelectionFileOptionTest 41: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 41: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet -41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile @@ -77119,12 +77164,12 @@ 41: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 41: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -41: [----------] 9 tests from SelectionFileOptionTest (2 ms total) +41: [----------] 9 tests from SelectionFileOptionTest (3 ms total) 41: 41: [----------] Global test environment tear-down -41: [==========] 192 tests from 11 test cases ran. (143 ms total) +41: [==========] 192 tests from 11 test cases ran. (229 ms total) 41: [ PASSED ] 192 tests. -41/54 Test #41: SelectionUnitTests .................. Passed 0.15 sec +41/54 Test #41: SelectionUnitTests .................. Passed 0.25 sec test 42 Start 42: MdrunOutputTests @@ -77134,12 +77179,12 @@ 42: [----------] Global test environment set-up. 42: [----------] 1 test from MdrunTest 42: [ RUN ] MdrunTest.WritesHelp -42: [ OK ] MdrunTest.WritesHelp (1 ms) -42: [----------] 1 test from MdrunTest (1 ms total) +42: [ OK ] MdrunTest.WritesHelp (2 ms) +42: [----------] 1 test from MdrunTest (2 ms total) 42: 42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -42: Setting the LD random seed to -1611153669 +42: Setting the LD random seed to -1210066698 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -77158,7 +77203,7 @@ 42: 42: 42: There were 2 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77185,9 +77230,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.513 0.257 199.9 +42: Time: 0.024 0.012 199.1 42: (ns/day) (hour/ns) -42: Performance: 0.673 35.642 +42: Performance: 14.420 1.664 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -77202,9 +77247,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (281 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (35 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -42: Setting the LD random seed to -87071763 +42: Setting the LD random seed to 1592893439 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -77223,7 +77268,7 @@ 42: 42: 42: There were 2 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77250,9 +77295,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.011 0.005 198.6 +42: Time: 0.019 0.010 199.0 42: (ns/day) (hour/ns) -42: Performance: 32.011 0.750 +42: Performance: 17.784 1.350 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -77267,9 +77312,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (10 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (16 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -42: Setting the LD random seed to -75548164 +42: Setting the LD random seed to -574101524 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -77288,7 +77333,7 @@ 42: 42: 42: There were 2 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77315,9 +77360,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.008 0.004 198.3 +42: Time: 0.032 0.016 199.3 42: (ns/day) (hour/ns) -42: Performance: 41.971 0.572 +42: Performance: 10.802 2.222 42: Reading frame 0 time 0.000 42: # Atoms 3 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -77332,8 +77377,8 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (8 ms) -42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (299 ms total) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (22 ms) +42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (73 ms total) 42: 42: [----------] 2 tests from Argon12/OutputFiles 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/0 @@ -77357,7 +77402,7 @@ 42: 42: 42: There were 3 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77384,10 +77429,10 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.009 0.005 198.6 +42: Time: 0.026 0.013 199.2 42: (ns/day) (hour/ns) -42: Performance: 308.562 0.078 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (9 ms) +42: Performance: 114.730 0.209 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (19 ms) 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/1 42: 42: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Argon12_OutputFiles_FilesArePresent_1_input.mdp]: @@ -77409,7 +77454,7 @@ 42: 42: 42: There were 3 notes -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77436,15 +77481,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.011 0.005 199.2 +42: Time: 0.027 0.013 199.5 42: (ns/day) (hour/ns) -42: Performance: 270.638 0.089 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (10 ms) -42: [----------] 2 tests from Argon12/OutputFiles (19 ms total) +42: Performance: 109.052 0.220 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (19 ms) +42: [----------] 2 tests from Argon12/OutputFiles (38 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/Trajectories 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 -42: Setting the LD random seed to 1625219067 +42: Setting the LD random seed to 259778557 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77457,7 +77502,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77485,12 +77530,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.015 0.008 199.0 +42: Time: 0.028 0.014 199.0 42: (ns/day) (hour/ns) -42: Performance: 79.573 0.302 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (14 ms) +42: Performance: 42.257 0.568 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (24 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 -42: Setting the LD random seed to -1510232385 +42: Setting the LD random seed to -1780655105 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77503,7 +77548,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77531,12 +77576,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.014 0.007 198.9 +42: Time: 0.031 0.016 199.1 42: (ns/day) (hour/ns) -42: Performance: 85.987 0.279 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (13 ms) +42: Performance: 38.453 0.624 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (26 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 -42: Setting the LD random seed to -1519414281 +42: Setting the LD random seed to -336166913 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77549,7 +77594,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77577,15 +77622,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.013 0.006 198.8 +42: Time: 0.029 0.015 199.1 42: (ns/day) (hour/ns) -42: Performance: 94.778 0.253 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (12 ms) -42: [----------] 3 tests from MdrunCanWrite/Trajectories (39 ms total) +42: Performance: 41.165 0.583 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (24 ms) +42: [----------] 3 tests from MdrunCanWrite/Trajectories (74 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/NptTrajectories 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 -42: Setting the LD random seed to 2092952511 +42: Setting the LD random seed to -1074194356 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77598,7 +77643,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77626,12 +77671,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.008 0.004 198.2 +42: Time: 0.017 0.008 198.0 42: (ns/day) (hour/ns) -42: Performance: 60.874 0.394 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (10 ms) +42: Performance: 31.039 0.773 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (18 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 -42: Setting the LD random seed to -680525841 +42: Setting the LD random seed to -1526989057 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77644,7 +77689,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77672,12 +77717,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.007 0.004 197.8 +42: Time: 0.016 0.008 198.0 42: (ns/day) (hour/ns) -42: Performance: 70.257 0.342 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (10 ms) +42: Performance: 32.142 0.747 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (17 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 -42: Setting the LD random seed to -17829954 +42: Setting the LD random seed to -10766596 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77690,7 +77735,7 @@ 42: 42: 42: There was 1 note -42: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +42: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 42: The current CPU can measure timings more accurately than the code in 42: mdrun-output-test was configured to use. This might affect your simulation 42: speed as accurate timings are needed for load-balancing. @@ -77718,16 +77763,16 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.008 0.004 197.9 +42: Time: 0.020 0.010 198.5 42: (ns/day) (hour/ns) -42: Performance: 67.089 0.358 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (9 ms) -42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (29 ms total) +42: Performance: 26.222 0.915 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (20 ms) +42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (55 ms total) 42: 42: [----------] Global test environment tear-down -42: [==========] 12 tests from 5 test cases ran. (387 ms total) +42: [==========] 12 tests from 5 test cases ran. (242 ms total) 42: [ PASSED ] 12 tests. -42/54 Test #42: MdrunOutputTests .................... Passed 0.40 sec +42/54 Test #42: MdrunOutputTests .................... Passed 0.26 sec test 43 Start 43: MdrunModulesTests @@ -77737,11 +77782,11 @@ 43: [----------] Global test environment set-up. 43: [----------] 4 tests from DensityFittingTest 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct -43: Setting the LD random seed to -555221249 +43: Setting the LD random seed to -44043585 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -77772,13 +77817,13 @@ 43: Norm of force = 1.07544477555643e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectInnerProduct.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (37 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (24 ms) 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy -43: Setting the LD random seed to 1004380079 +43: Setting the LD random seed to 1543283455 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -77809,17 +77854,17 @@ 43: Norm of force = 1.25497916369090e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectForRelativeEntropy.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (5 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (7 ms) 43: [ RUN ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch 43: 43: [WARNING] /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-death-test.cc:836:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 2 threads. -43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (5 ms) +43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (7 ms) 43: [ RUN ] DensityFittingTest.CheckpointWorks 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks_input.mdp]: 43: Setting nstcalcenergy (100) equal to nstenergy (2) 43: -43: Setting the LD random seed to -371722243 +43: Setting the LD random seed to -1162158097 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -77830,7 +77875,7 @@ 43: 43: 43: There were 2 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -77857,10 +77902,10 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.008 0.004 198.2 +43: Time: 0.016 0.008 198.6 43: (ns/day) (hour/ns) -43: Performance: 67.740 0.354 -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Performance: 32.521 0.738 +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -77884,12 +77929,12 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.007 0.004 198.2 +43: Time: 0.017 0.008 198.5 43: (ns/day) (hour/ns) -43: Performance: 117.187 0.205 +43: Performance: 51.150 0.469 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.edr as double precision energy file -43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (13 ms) -43: [----------] 4 tests from DensityFittingTest (60 ms total) +43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (26 ms) +43: [----------] 4 tests from DensityFittingTest (64 ms total) 43: 43: [----------] 4 tests from MimicTest 43: [ RUN ] MimicTest.OneQuantumMol @@ -77898,7 +77943,7 @@ 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -67858785 +43: Setting the LD random seed to -441516097 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -77917,7 +77962,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -77942,19 +77987,19 @@ 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 186.2 +43: Time: 0.001 0.000 188.0 43: (ns/day) (hour/ns) -43: Performance: 408.660 0.059 +43: Performance: 248.268 0.097 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.OneQuantumMol (4 ms) +43: [ OK ] MimicTest.OneQuantumMol (7 ms) 43: [ RUN ] MimicTest.AllQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -55809 +43: Setting the LD random seed to -4382857 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -77973,7 +78018,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -77998,19 +78043,19 @@ 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 185.5 +43: Time: 0.001 0.000 187.6 43: (ns/day) (hour/ns) -43: Performance: 432.331 0.056 +43: Performance: 303.709 0.079 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.AllQuantumMol (4 ms) +43: [ OK ] MimicTest.AllQuantumMol (6 ms) 43: [ RUN ] MimicTest.TwoQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to 2113924445 +43: Setting the LD random seed to -822130737 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -78029,7 +78074,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -78050,23 +78095,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 16 % of the run time was spent in pair search, +43: NOTE: 14 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 185.6 +43: Time: 0.001 0.000 187.5 43: (ns/day) (hour/ns) -43: Performance: 438.393 0.055 +43: Performance: 296.930 0.081 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.TwoQuantumMol (4 ms) +43: [ OK ] MimicTest.TwoQuantumMol (6 ms) 43: [ RUN ] MimicTest.BondCuts 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -268454147 +43: Setting the LD random seed to -730400837 43: Generated 2211 of the 2211 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 2211 of the 2211 1-4 parameter combinations @@ -78085,7 +78130,7 @@ 43: 43: 43: There were 3 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -78106,22 +78151,25 @@ 43: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: +43: NOTE: 15 % of the run time was spent in pair search, +43: you might want to increase nstlist (this has no effect on accuracy) +43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.001 195.0 +43: Time: 0.001 0.001 191.3 43: (ns/day) (hour/ns) -43: Performance: 132.894 0.181 +43: Performance: 154.342 0.155 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 43: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 43: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 43: Note that mdrun will redetermine rlist based on the actual pair-list setup 43: This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.BondCuts (17 ms) -43: [----------] 4 tests from MimicTest (30 ms total) +43: [ OK ] MimicTest.BondCuts (30 ms) +43: [----------] 4 tests from MimicTest (49 ms total) 43: 43: [----------] 2 tests from WithIntegrator/ImdTest 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/0 -43: Setting the LD random seed to 771612598 +43: Setting the LD random seed to -67143693 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -78143,7 +78191,7 @@ 43: 43: 43: There were 2 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -78165,7 +78213,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 56149. +43: IMD: Listening for IMD connection on port 40635. 43: IMD: -imdwait not set, starting simulation. 43: starting mdrun 'Glycine' 43: 2 steps, 0.0 ps. @@ -78178,17 +78226,17 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.010 0.005 198.1 +43: Time: 0.025 0.013 197.8 43: (ns/day) (hour/ns) -43: Performance: 98.269 0.244 -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (109 ms) +43: Performance: 40.397 0.594 +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (241 ms) 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/1 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithIntegrator_ImdTest_ImdCanRun_1_input.mdp]: 43: Setting tcoupl from 'V-rescale' to 'no'. Temperature coupling does not 43: apply to steep. 43: -43: Setting the LD random seed to -18907153 +43: Setting the LD random seed to -822879125 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -78203,7 +78251,7 @@ 43: 43: 43: There were 2 notes -43: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +43: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 43: The current CPU can measure timings more accurately than the code in 43: mdrun-modules-test was configured to use. This might affect your simulation 43: speed as accurate timings are needed for load-balancing. @@ -78223,7 +78271,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 36623. +43: IMD: Listening for IMD connection on port 48689. 43: IMD: -imdwait not set, starting simulation. 43: 43: Steepest Descents: @@ -78240,13 +78288,13 @@ 43: Maximum force = 1.77948604657896e+04 on atom 9 43: Norm of force = 7.87328617833980e+03 43: This run will generate roughly 0 Mb of data -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (103 ms) -43: [----------] 2 tests from WithIntegrator/ImdTest (212 ms total) +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (204 ms) +43: [----------] 2 tests from WithIntegrator/ImdTest (445 ms total) 43: 43: [----------] Global test environment tear-down -43: [==========] 10 tests from 3 test cases ran. (302 ms total) +43: [==========] 10 tests from 3 test cases ran. (559 ms total) 43: [ PASSED ] 10 tests. -43/54 Test #43: MdrunModulesTests ................... Passed 0.31 sec +43/54 Test #43: MdrunModulesTests ................... Passed 0.57 sec test 44 Start 44: MdrunIOTests @@ -78261,7 +78309,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -273699015 +44: Setting the LD random seed to -138420279 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78284,14 +78332,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.EmptyMdpFileWorks (3 ms) +44: [ OK ] GromppTest.EmptyMdpFileWorks (5 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorks 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorks_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -1544749827 +44: Setting the LD random seed to 2145250027 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78320,14 +78368,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorks (3 ms) +44: [ OK ] GromppTest.SimulatedAnnealingWorks (4 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorksWithMultipleGroups_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -205914241 +44: Setting the LD random seed to 2147433471 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78362,12 +78410,12 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (3 ms) -44: [----------] 3 tests from GromppTest (9 ms total) +44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (4 ms) +44: [----------] 3 tests from GromppTest (13 ms total) 44: 44: [----------] 6 tests from MdrunTerminationTest 44: [ RUN ] MdrunTerminationTest.CheckpointRestartAppendsByDefault -44: Setting the LD random seed to -587465739 +44: Setting the LD random seed to -100902209 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78381,7 +78429,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78409,15 +78457,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 197.2 +44: Time: 0.014 0.007 198.4 44: (ns/day) (hour/ns) -44: Performance: 57.735 0.416 +44: Performance: 36.009 0.667 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78439,12 +78487,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 195.5 +44: Time: 0.010 0.005 197.9 44: (ns/day) (hour/ns) -44: Performance: 77.229 0.311 -44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (55 ms) +44: Performance: 49.683 0.483 +44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (40 ms) 44: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts -44: Setting the LD random seed to -403308613 +44: Setting the LD random seed to -77664385 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78458,7 +78506,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78478,7 +78526,7 @@ 44: starting mdrun 'spc2' 44: 100 steps, 0.1 ps. 44: -44: Step 3: Run time exceeded 0.000 hours, will terminate the run within 2 steps +44: Step 4: Run time exceeded 0.000 hours, will terminate the run within 2 steps 44: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 44: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 44: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm @@ -78486,15 +78534,15 @@ 44: This run will generate roughly 0 Mb of data 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 197.1 +44: Time: 0.015 0.007 198.4 44: (ns/day) (hour/ns) -44: Performance: 102.223 0.235 +44: Performance: 70.001 0.343 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 102 44: Writing statusfile with starting step 0 and length 102 steps... 44: time 0.000 and length 0.102 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78511,17 +78559,17 @@ 44: This can lead to significant performance degradation. 44: Consider using -pin on (and -pinoffset in case you run multiple jobs). 44: starting mdrun 'spc2' -44: 102 steps, 0.1 ps (continuing from step 4, 0.0 ps). +44: 102 steps, 0.1 ps (continuing from step 5, 0.0 ps). 44: 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.016 0.008 198.5 +44: Time: 0.015 0.007 198.5 44: (ns/day) (hour/ns) -44: Performance: 1069.234 0.022 -44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (23 ms) +44: Performance: 1141.744 0.021 +44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (25 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend -44: Setting the LD random seed to 2145009503 +44: Setting the LD random seed to -95683684 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78535,7 +78583,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78563,15 +78611,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 197.2 +44: Time: 0.013 0.007 198.4 44: (ns/day) (hour/ns) -44: Performance: 63.166 0.380 +44: Performance: 38.142 0.629 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78594,15 +78642,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 199.1 +44: Time: 0.015 0.007 198.9 44: (ns/day) (hour/ns) -44: Performance: 55.856 0.430 +44: Performance: 34.915 0.687 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 6 44: Writing statusfile with starting step 0 and length 6 steps... 44: time 0.000 and length 0.006 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78625,15 +78673,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.004 199.1 +44: Time: 0.014 0.007 199.4 44: (ns/day) (hour/ns) -44: Performance: 73.493 0.327 +44: Performance: 37.112 0.647 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 8 44: Writing statusfile with starting step 0 and length 8 steps... 44: time 0.000 and length 0.008 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78656,10 +78704,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 199.2 +44: Time: 0.013 0.007 199.3 44: (ns/day) (hour/ns) -44: Performance: 67.171 0.357 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 38.892 0.617 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78679,16 +78727,16 @@ 44: starting mdrun 'spc2' 44: 8 steps, 0.0 ps (continuing from step 8, 0.0 ps). 44: -44: NOTE: 20 % of the run time was spent in pair search, +44: NOTE: 24 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.000 0.000 177.5 +44: Time: 0.000 0.000 176.0 44: (ns/day) (hour/ns) -44: Performance: 623.229 0.039 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (33 ms) +44: Performance: 562.494 0.043 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (46 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile -44: Setting the LD random seed to -941404941 +44: Setting the LD random seed to -1017128206 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78702,7 +78750,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78730,15 +78778,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.004 191.7 +44: Time: 0.013 0.006 198.2 44: (ns/day) (hour/ns) -44: Performance: 69.773 0.344 +44: Performance: 41.052 0.585 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78761,12 +78809,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.8 +44: Time: 0.016 0.008 198.6 44: (ns/day) (hour/ns) -44: Performance: 128.315 0.187 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (13 ms) +44: Performance: 54.157 0.443 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (23 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile -44: Setting the LD random seed to -35297637 +44: Setting the LD random seed to -1283590369 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78780,7 +78828,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78808,17 +78856,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.9 +44: Time: 0.014 0.007 198.4 44: (ns/day) (hour/ns) -44: Performance: 75.120 0.319 +44: Performance: 37.243 0.644 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (9 ms) +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (14 ms) 44: [ RUN ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles -44: Setting the LD random seed to -1124091490 +44: Setting the LD random seed to -106993413 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78832,7 +78880,7 @@ 44: 44: 44: There was 1 note -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78860,15 +78908,15 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.8 +44: Time: 0.017 0.009 198.6 44: (ns/day) (hour/ns) -44: Performance: 78.019 0.308 +44: Performance: 29.698 0.808 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78891,11 +78939,11 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 199.1 +44: Time: 0.014 0.007 199.3 44: (ns/day) (hour/ns) -44: Performance: 78.061 0.307 -44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (12 ms) -44: [----------] 6 tests from MdrunTerminationTest (145 ms total) +44: Performance: 38.076 0.630 +44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (25 ms) +44: [----------] 6 tests from MdrunTerminationTest (173 ms total) 44: 44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -78939,7 +78987,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78971,10 +79019,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.8 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 267.205 0.090 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 143.348 0.167 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -78996,10 +79044,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.023 0.011 199.1 44: (ns/day) (hour/ns) -44: Performance: 162.313 0.148 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 68.439 0.351 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79021,13 +79069,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.6 +44: Time: 0.022 0.011 199.1 44: (ns/day) (hour/ns) -44: Performance: 164.729 0.146 +44: Performance: 71.124 0.337 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (47 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -79069,7 +79117,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79101,10 +79149,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 199.3 +44: Time: 0.021 0.010 199.1 44: (ns/day) (hour/ns) -44: Performance: 246.188 0.097 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 141.495 0.170 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79126,10 +79174,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 199.4 +44: Time: 0.019 0.010 199.5 44: (ns/day) (hour/ns) -44: Performance: 144.457 0.166 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 80.080 0.300 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79151,13 +79199,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 199.5 +44: Time: 0.020 0.010 199.1 44: (ns/day) (hour/ns) -44: Performance: 132.413 0.181 +44: Performance: 79.261 0.303 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (43 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -79189,7 +79237,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79222,10 +79270,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 294.727 0.081 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 143.418 0.167 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79248,10 +79296,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 168.017 0.143 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 75.869 0.316 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79274,13 +79322,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.021 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 149.816 0.160 +44: Performance: 75.427 0.318 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (45 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -79312,7 +79360,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79345,10 +79393,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.024 0.012 198.7 44: (ns/day) (hour/ns) -44: Performance: 301.189 0.080 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 122.963 0.195 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79371,10 +79419,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 198.0 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 173.244 0.139 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 77.526 0.310 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79397,13 +79445,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 161.216 0.149 +44: Performance: 77.357 0.310 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (46 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -79461,7 +79509,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79493,10 +79541,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.7 +44: Time: 0.021 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 272.976 0.088 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 142.205 0.169 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79518,10 +79566,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 161.722 0.148 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 78.070 0.307 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79543,13 +79591,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.023 0.011 199.1 44: (ns/day) (hour/ns) -44: Performance: 167.532 0.143 +44: Performance: 68.526 0.350 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (46 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -79607,7 +79655,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79639,10 +79687,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 199.4 +44: Time: 0.021 0.011 199.4 44: (ns/day) (hour/ns) -44: Performance: 246.935 0.097 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 139.163 0.172 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79664,10 +79712,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 199.4 +44: Time: 0.020 0.010 199.3 44: (ns/day) (hour/ns) -44: Performance: 135.261 0.177 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 77.539 0.310 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79689,13 +79737,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.8 +44: Time: 0.021 0.010 199.4 44: (ns/day) (hour/ns) -44: Performance: 146.504 0.164 +44: Performance: 74.163 0.324 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (45 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -79743,7 +79791,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79776,10 +79824,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.024 0.012 198.9 44: (ns/day) (hour/ns) -44: Performance: 289.710 0.083 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 121.350 0.198 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79802,10 +79850,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 197.7 +44: Time: 0.020 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 161.054 0.149 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 75.963 0.316 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79828,13 +79876,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.2 +44: Time: 0.020 0.010 198.6 44: (ns/day) (hour/ns) -44: Performance: 162.879 0.147 +44: Performance: 78.884 0.304 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (48 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_input.mdp]: @@ -79882,7 +79930,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79915,10 +79963,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.6 +44: Time: 0.021 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 259.015 0.093 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 138.433 0.173 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79941,10 +79989,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 197.7 +44: Time: 0.023 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 176.732 0.136 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 66.984 0.358 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -79967,13 +80015,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 197.9 +44: Time: 0.164 0.082 199.8 44: (ns/day) (hour/ns) -44: Performance: 163.443 0.147 +44: Performance: 9.470 2.534 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (120 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_input.mdp]: @@ -80063,7 +80111,7 @@ 44: 44: 44: There were 6 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80097,10 +80145,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.008 198.6 +44: Time: 0.032 0.016 198.9 44: (ns/day) (hour/ns) -44: Performance: 195.562 0.123 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 91.225 0.263 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80122,10 +80170,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.3 +44: Time: 0.023 0.012 198.3 44: (ns/day) (hour/ns) -44: Performance: 125.345 0.191 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 66.068 0.363 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80147,13 +80195,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.3 +44: Time: 0.026 0.013 198.7 44: (ns/day) (hour/ns) -44: Performance: 134.063 0.179 +44: Performance: 59.699 0.402 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (61 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (110 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -80243,7 +80291,7 @@ 44: 44: 44: There were 6 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80277,10 +80325,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.008 198.7 +44: Time: 0.039 0.019 199.0 44: (ns/day) (hour/ns) -44: Performance: 190.201 0.126 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 75.599 0.317 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80302,10 +80350,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.3 +44: Time: 0.034 0.017 199.0 44: (ns/day) (hour/ns) -44: Performance: 131.229 0.183 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 46.155 0.520 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80327,13 +80375,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.3 +44: Time: 0.026 0.013 198.6 44: (ns/day) (hour/ns) -44: Performance: 129.909 0.185 +44: Performance: 60.507 0.397 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (60 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (119 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_input.mdp]: @@ -80413,7 +80461,7 @@ 44: 44: 44: There were 5 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80448,10 +80496,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 198.6 +44: Time: 0.116 0.058 199.7 44: (ns/day) (hour/ns) -44: Performance: 211.596 0.113 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 25.282 0.949 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80474,10 +80522,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.3 +44: Time: 0.039 0.020 198.9 44: (ns/day) (hour/ns) -44: Performance: 134.125 0.179 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 39.536 0.607 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80500,13 +80548,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 198.5 +44: Time: 0.028 0.014 198.7 44: (ns/day) (hour/ns) -44: Performance: 117.324 0.205 +44: Performance: 55.925 0.429 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (114 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (248 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_input.mdp]: @@ -80586,7 +80634,7 @@ 44: 44: 44: There were 5 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80621,10 +80669,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.016 0.008 198.8 +44: Time: 0.053 0.027 199.4 44: (ns/day) (hour/ns) -44: Performance: 178.358 0.135 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 55.224 0.435 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80647,10 +80695,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 198.5 +44: Time: 0.023 0.012 198.7 44: (ns/day) (hour/ns) -44: Performance: 119.029 0.202 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 65.880 0.364 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80673,14 +80721,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.006 198.5 +44: Time: 0.025 0.013 198.7 44: (ns/day) (hour/ns) -44: Performance: 121.125 0.198 +44: Performance: 61.691 0.389 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (98 ms) -44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (537 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (180 ms) +44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (1099 ms total) 44: 44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -80742,7 +80790,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80778,10 +80826,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.016 0.008 198.5 +44: Time: 0.044 0.022 199.1 44: (ns/day) (hour/ns) -44: Performance: 187.075 0.128 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 65.924 0.364 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80803,10 +80851,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 197.1 +44: Time: 0.033 0.017 198.4 44: (ns/day) (hour/ns) -44: Performance: 118.150 0.203 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 47.096 0.510 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80828,13 +80876,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 198.3 +44: Time: 0.047 0.024 199.1 44: (ns/day) (hour/ns) -44: Performance: 116.979 0.205 +44: Performance: 32.717 0.734 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (60 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (128 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -80894,7 +80942,7 @@ 44: 44: 44: There were 4 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80930,10 +80978,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.016 0.008 199.4 +44: Time: 0.032 0.016 199.4 44: (ns/day) (hour/ns) -44: Performance: 187.594 0.128 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 90.420 0.265 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80955,10 +81003,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 199.3 +44: Time: 0.028 0.014 199.4 44: (ns/day) (hour/ns) -44: Performance: 119.476 0.201 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 54.860 0.437 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -80980,13 +81028,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 199.4 +44: Time: 0.033 0.016 199.5 44: (ns/day) (hour/ns) -44: Performance: 109.194 0.220 +44: Performance: 47.721 0.503 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (61 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (113 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -81036,7 +81084,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81073,10 +81121,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.008 198.5 +44: Time: 0.030 0.015 198.8 44: (ns/day) (hour/ns) -44: Performance: 193.253 0.124 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 95.988 0.250 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81099,10 +81147,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.006 197.4 +44: Time: 0.029 0.014 198.2 44: (ns/day) (hour/ns) -44: Performance: 120.996 0.198 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 53.722 0.447 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81125,13 +81173,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 198.3 +44: Time: 0.029 0.015 198.7 44: (ns/day) (hour/ns) -44: Performance: 109.078 0.220 +44: Performance: 52.754 0.455 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (120 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (209 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -81181,7 +81229,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81218,10 +81266,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.008 198.3 +44: Time: 0.031 0.015 198.6 44: (ns/day) (hour/ns) -44: Performance: 191.177 0.126 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 94.793 0.253 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81244,10 +81292,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 197.3 +44: Time: 0.031 0.016 198.3 44: (ns/day) (hour/ns) -44: Performance: 119.276 0.201 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 49.258 0.487 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81270,14 +81318,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.015 0.007 198.4 +44: Time: 0.029 0.014 198.7 44: (ns/day) (hour/ns) -44: Performance: 106.193 0.226 +44: Performance: 53.730 0.447 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (102 ms) -44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (343 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (179 ms) +44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (629 ms total) 44: 44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -81321,7 +81369,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81354,10 +81402,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.023 0.012 199.1 44: (ns/day) (hour/ns) -44: Performance: 290.705 0.083 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 125.362 0.191 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81380,10 +81428,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.7 +44: Time: 0.019 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 143.528 0.167 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 79.626 0.301 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81406,13 +81454,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 198.4 +44: Time: 0.019 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 176.653 0.136 +44: Performance: 79.873 0.300 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (46 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -81444,7 +81492,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81477,10 +81525,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 289.639 0.083 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 130.914 0.183 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81503,10 +81551,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 197.8 +44: Time: 0.021 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 178.712 0.134 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 72.415 0.331 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81529,13 +81577,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.5 +44: Time: 0.022 0.011 198.8 44: (ns/day) (hour/ns) -44: Performance: 171.947 0.140 +44: Performance: 68.760 0.349 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (23 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (48 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -81575,7 +81623,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81608,10 +81656,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.022 0.011 198.4 44: (ns/day) (hour/ns) -44: Performance: 282.318 0.085 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 133.764 0.179 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81634,10 +81682,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 197.8 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 177.815 0.135 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 78.730 0.305 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81660,13 +81708,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 198.5 +44: Time: 0.019 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 174.005 0.138 +44: Performance: 79.623 0.301 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (45 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -81708,7 +81756,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81741,10 +81789,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.7 +44: Time: 0.021 0.010 199.1 44: (ns/day) (hour/ns) -44: Performance: 278.449 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 141.341 0.170 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81767,10 +81815,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.018 0.009 198.9 44: (ns/day) (hour/ns) -44: Performance: 161.311 0.149 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 84.613 0.284 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81793,13 +81841,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.2 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 142.520 0.168 +44: Performance: 78.933 0.304 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (43 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -81831,7 +81879,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81864,10 +81912,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 306.343 0.078 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 143.702 0.167 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81890,10 +81938,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.024 0.012 199.5 44: (ns/day) (hour/ns) -44: Performance: 161.697 0.148 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 64.858 0.370 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81916,13 +81964,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 199.4 +44: Time: 0.021 0.011 199.4 44: (ns/day) (hour/ns) -44: Performance: 143.980 0.167 +44: Performance: 72.917 0.329 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (47 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -81954,7 +82002,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -81987,10 +82035,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.8 +44: Time: 0.024 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 256.094 0.094 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 121.509 0.198 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82013,10 +82061,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.1 +44: Time: 0.025 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 152.831 0.157 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 62.550 0.384 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82039,14 +82087,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.7 +44: Time: 0.028 0.014 199.2 44: (ns/day) (hour/ns) -44: Performance: 144.531 0.166 +44: Performance: 54.634 0.439 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (27 ms) -44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (149 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (54 ms) +44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (283 ms total) 44: 44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -82090,7 +82138,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82122,10 +82170,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 291.817 0.082 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 131.315 0.183 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82147,10 +82195,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 198.1 +44: Time: 0.019 0.010 198.7 44: (ns/day) (hour/ns) -44: Performance: 185.643 0.129 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 79.587 0.302 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82172,13 +82220,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.4 +44: Time: 0.021 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 164.902 0.146 +44: Performance: 74.950 0.320 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (23 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (45 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -82220,7 +82268,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82252,10 +82300,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.020 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 301.117 0.080 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 145.343 0.165 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82277,10 +82325,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 197.7 +44: Time: 0.019 0.009 198.8 44: (ns/day) (hour/ns) -44: Performance: 175.864 0.136 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 83.182 0.289 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82302,13 +82350,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.4 +44: Time: 0.020 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 164.076 0.146 +44: Performance: 78.309 0.306 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (44 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -82350,7 +82398,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82382,10 +82430,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.031 0.016 199.2 44: (ns/day) (hour/ns) -44: Performance: 281.974 0.085 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 94.331 0.254 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82407,10 +82455,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 198.3 +44: Time: 0.021 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 174.437 0.138 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 72.562 0.331 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82432,13 +82480,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.023 0.012 198.8 44: (ns/day) (hour/ns) -44: Performance: 151.121 0.159 +44: Performance: 66.375 0.362 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (53 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -82480,7 +82528,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82512,10 +82560,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 199.3 +44: Time: 0.023 0.012 199.5 44: (ns/day) (hour/ns) -44: Performance: 263.753 0.091 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 126.779 0.189 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82537,10 +82585,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.023 0.012 199.5 44: (ns/day) (hour/ns) -44: Performance: 152.905 0.157 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 66.024 0.364 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82562,14 +82610,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 199.3 +44: Time: 0.021 0.011 198.8 44: (ns/day) (hour/ns) -44: Performance: 163.042 0.147 +44: Performance: 72.295 0.332 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (25 ms) -44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (97 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (48 ms) +44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (190 ms total) 44: 44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -82613,7 +82661,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82646,10 +82694,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.2 +44: Time: 0.020 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 301.190 0.080 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 146.468 0.164 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82672,10 +82720,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 197.7 +44: Time: 0.022 0.011 198.5 44: (ns/day) (hour/ns) -44: Performance: 165.035 0.145 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 70.405 0.341 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82698,13 +82746,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.3 +44: Time: 0.018 0.009 197.7 44: (ns/day) (hour/ns) -44: Performance: 157.067 0.153 +44: Performance: 83.272 0.288 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (45 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -82746,7 +82794,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82779,10 +82827,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.1 +44: Time: 0.024 0.012 199.1 44: (ns/day) (hour/ns) -44: Performance: 305.365 0.079 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 122.795 0.195 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82805,10 +82853,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 197.4 +44: Time: 0.019 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 181.041 0.133 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 80.605 0.298 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82831,13 +82879,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 198.1 +44: Time: 0.028 0.014 199.1 44: (ns/day) (hour/ns) -44: Performance: 174.491 0.138 +44: Performance: 54.525 0.440 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (50 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -82869,7 +82917,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82902,10 +82950,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.021 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 277.780 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 139.537 0.172 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82928,10 +82976,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.4 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 165.034 0.145 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 76.218 0.315 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -82954,13 +83002,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.2 +44: Time: 0.023 0.012 198.5 44: (ns/day) (hour/ns) -44: Performance: 170.509 0.141 +44: Performance: 65.890 0.364 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (47 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -82992,7 +83040,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83025,10 +83073,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.025 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 292.120 0.082 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 117.603 0.204 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83051,10 +83099,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.3 +44: Time: 0.020 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 166.355 0.144 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 76.916 0.312 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83077,13 +83125,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.3 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 162.730 0.147 +44: Performance: 69.626 0.345 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (48 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -83137,7 +83185,7 @@ 44: There were 3 notes 44: 44: There was 1 warning -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83170,10 +83218,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.020 0.010 199.0 44: (ns/day) (hour/ns) -44: Performance: 278.733 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 143.984 0.167 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83196,10 +83244,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.0 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 155.337 0.155 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 77.022 0.312 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83222,13 +83270,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.2 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 154.859 0.155 +44: Performance: 76.194 0.315 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (45 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -83268,7 +83316,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83301,10 +83349,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.020 0.010 198.8 44: (ns/day) (hour/ns) -44: Performance: 280.264 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 146.869 0.163 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83327,10 +83375,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.019 0.009 198.8 44: (ns/day) (hour/ns) -44: Performance: 157.908 0.152 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 83.177 0.289 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83353,13 +83401,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.022 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 152.211 0.158 +44: Performance: 69.525 0.345 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (26 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (45 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -83401,7 +83449,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83434,10 +83482,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.023 0.012 199.0 44: (ns/day) (hour/ns) -44: Performance: 279.905 0.086 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 126.731 0.189 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83460,10 +83508,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 197.2 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 175.087 0.137 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 77.334 0.310 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83486,13 +83534,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.2 +44: Time: 0.018 0.009 198.5 44: (ns/day) (hour/ns) -44: Performance: 171.271 0.140 +44: Performance: 84.918 0.283 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (24 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (45 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 @@ -83526,7 +83574,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83559,10 +83607,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.6 +44: Time: 0.022 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 258.253 0.093 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 134.226 0.179 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83585,10 +83633,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 198.3 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 169.587 0.142 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 77.684 0.309 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83611,13 +83659,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.3 +44: Time: 0.020 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 160.607 0.149 +44: Performance: 77.411 0.310 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (45 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -83649,7 +83697,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83682,10 +83730,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 199.4 +44: Time: 0.021 0.011 199.3 44: (ns/day) (hour/ns) -44: Performance: 263.212 0.091 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 138.108 0.174 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83708,10 +83756,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 199.3 +44: Time: 0.021 0.010 199.5 44: (ns/day) (hour/ns) -44: Performance: 165.425 0.145 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 74.718 0.321 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83734,18 +83782,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.004 199.2 +44: Time: 0.021 0.010 199.4 44: (ns/day) (hour/ns) -44: Performance: 175.537 0.137 +44: Performance: 74.872 0.321 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (45 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 -44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (0 ms) +44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (1 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (0 ms) -44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (222 ms total) +44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (416 ms total) 44: 44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact 44: [ RUN ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -83779,7 +83827,7 @@ 44: Number of degrees of freedom in T-Coupling group System is 33.00 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83812,10 +83860,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.012 0.006 198.7 +44: Time: 0.023 0.011 199.0 44: (ns/day) (hour/ns) -44: Performance: 251.345 0.095 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 129.692 0.185 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83838,10 +83886,10 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.5 +44: Time: 0.021 0.010 198.9 44: (ns/day) (hour/ns) -44: Performance: 148.705 0.161 -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Performance: 75.137 0.319 +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83864,18 +83912,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.6 +44: Time: 0.021 0.011 198.9 44: (ns/day) (hour/ns) -44: Performance: 147.798 0.162 +44: Performance: 73.558 0.326 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (26 ms) -44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (26 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (46 ms) +44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (46 ms total) 44: 44: [----------] 3 tests from Checking/InitialConstraintsTest 44: [ RUN ] Checking/InitialConstraintsTest.Works/0 -44: Setting the LD random seed to -93324043 +44: Setting the LD random seed to -310915345 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -83893,7 +83941,7 @@ 44: 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83922,13 +83970,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.004 197.7 +44: Time: 0.017 0.009 198.2 44: (ns/day) (hour/ns) -44: Performance: 46.856 0.512 +44: Performance: 20.118 1.193 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (17 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/1 -44: Setting the LD random seed to 2063564275 +44: Setting the LD random seed to -44315171 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -83946,7 +83994,7 @@ 44: 44: 44: There were 2 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -83975,18 +84023,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 198.8 +44: Time: 0.013 0.007 199.0 44: (ns/day) (hour/ns) -44: Performance: 52.165 0.460 +44: Performance: 26.135 0.918 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (8 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (14 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 44: Integrator method md-vv-avek is implemented primarily for validation 44: purposes; for molecular dynamics, you should probably be using md or md-vv 44: -44: Setting the LD random seed to -1074151467 +44: Setting the LD random seed to -614041897 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -84004,7 +84052,7 @@ 44: 44: 44: There were 3 notes -44: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +44: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 44: The current CPU can measure timings more accurately than the code in 44: mdrun-io-test was configured to use. This might affect your simulation 44: speed as accurate timings are needed for load-balancing. @@ -84033,17 +84081,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.003 197.5 +44: Time: 0.014 0.007 198.1 44: (ns/day) (hour/ns) -44: Performance: 49.598 0.484 +44: Performance: 25.159 0.954 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (9 ms) -44: [----------] 3 tests from Checking/InitialConstraintsTest (26 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (15 ms) +44: [----------] 3 tests from Checking/InitialConstraintsTest (46 ms total) 44: 44: [----------] Global test environment tear-down -44: [==========] 51 tests from 9 test cases ran. (1554 ms total) +44: [==========] 51 tests from 9 test cases ran. (2895 ms total) 44: [ PASSED ] 51 tests. -44/54 Test #44: MdrunIOTests ........................ Passed 1.57 sec +44/54 Test #44: MdrunIOTests ........................ Passed 2.92 sec test 45 Start 45: MdrunTests @@ -84058,7 +84106,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -1124139189 +45: Setting the LD random seed to -604670081 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -84083,7 +84131,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84112,11 +84160,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.041 0.021 199.5 +45: Time: 0.079 0.040 199.6 45: (ns/day) (hour/ns) -45: Performance: 1682.753 0.014 -45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (87 ms) -45: [----------] 1 test from DispersionCorrectionTest (87 ms total) +45: Performance: 875.743 0.027 +45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (107 ms) +45: [----------] 1 test from DispersionCorrectionTest (107 ms total) 45: 45: [----------] 1 test from OriresTest 45: [ RUN ] OriresTest.OriresCanRun @@ -84125,7 +84173,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -186164249 +45: Setting the LD random seed to -805947913 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -84140,7 +84188,7 @@ 45: 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84172,15 +84220,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.016 0.008 198.7 +45: Time: 0.028 0.014 198.8 45: (ns/day) (hour/ns) -45: Performance: 242.541 0.099 -45: [ OK ] OriresTest.OriresCanRun (421 ms) -45: [----------] 1 test from OriresTest (421 ms total) +45: Performance: 136.825 0.175 +45: [ OK ] OriresTest.OriresCanRun (694 ms) +45: [----------] 1 test from OriresTest (694 ms total) 45: 45: [----------] 3 tests from PmeTest 45: [ RUN ] PmeTest.ReproducesEnergies -45: Setting the LD random seed to -759448481 +45: Setting the LD random seed to -813711369 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -84200,7 +84248,7 @@ 45: 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84229,11 +84277,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.030 0.015 199.4 +45: Time: 0.081 0.040 199.6 45: (ns/day) (hour/ns) -45: Performance: 119.209 0.201 +45: Performance: 44.841 0.535 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84255,11 +84303,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.029 0.014 199.4 +45: Time: 0.046 0.023 199.2 45: (ns/day) (hour/ns) -45: Performance: 125.141 0.192 +45: Performance: 79.251 0.303 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84281,18 +84329,18 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.029 0.014 198.9 +45: Time: 0.047 0.024 199.3 45: (ns/day) (hour/ns) -45: Performance: 126.463 0.190 +45: Performance: 77.013 0.312 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (196 ms) +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (303 ms) 45: [ RUN ] PmeTest.ScalesTheBox 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1796270082 +45: Setting the LD random seed to -919553 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -84312,7 +84360,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84332,9 +84380,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 188.2 +45: Time: 0.002 0.001 188.3 45: (ns/day) (hour/ns) -45: Performance: 125.278 0.192 +45: Performance: 79.204 0.303 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -84343,14 +84391,14 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBox (10 ms) +45: [ OK ] PmeTest.ScalesTheBox (15 ms) 45: [ RUN ] PmeTest.ScalesTheBoxWithWalls 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 2130303487 +45: Setting the LD random seed to -172097602 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -84371,7 +84419,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84391,9 +84439,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.004 0.002 194.6 +45: Time: 0.007 0.004 194.4 45: (ns/day) (hour/ns) -45: Performance: 38.041 0.631 +45: Performance: 24.545 0.978 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -84402,8 +84450,8 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBoxWithWalls (461 ms) -45: [----------] 3 tests from PmeTest (667 ms total) +45: [ OK ] PmeTest.ScalesTheBoxWithWalls (636 ms) +45: [----------] 3 tests from PmeTest (954 ms total) 45: 45: [----------] 1 test from CompelTest 45: [ RUN ] CompelTest.SwapCanRun @@ -84412,7 +84460,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -109061650 +45: Setting the LD random seed to -13121025 45: Generated 330891 of the 330891 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 330891 of the 330891 1-4 parameter combinations @@ -84443,7 +84491,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84479,14 +84527,14 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 28 % of the run time was spent in pair search, +45: NOTE: 33 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.416 0.208 199.9 +45: Time: 0.538 0.269 199.9 45: (ns/day) (hour/ns) -45: Performance: 6.222 3.857 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 4.815 4.984 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84517,11 +84565,11 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.270 0.135 199.9 +45: Time: 0.410 0.205 199.9 45: (ns/day) (hour/ns) -45: Performance: 9.583 2.504 -45: [ OK ] CompelTest.SwapCanRun (960 ms) -45: [----------] 1 test from CompelTest (960 ms total) +45: Performance: 6.312 3.802 +45: [ OK ] CompelTest.SwapCanRun (1424 ms) +45: [----------] 1 test from CompelTest (1424 ms total) 45: 45: [----------] 6 tests from BondedInteractionsTest 45: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -84530,7 +84578,7 @@ 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -33644581 +45: Setting the LD random seed to 2137477117 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84550,7 +84598,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84575,18 +84623,18 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 187.4 +45: Time: 0.001 0.000 188.3 45: (ns/day) (hour/ns) -45: Performance: 373.546 0.064 +45: Performance: 262.254 0.092 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalBondWorks (5 ms) +45: [ OK ] BondedInteractionsTest.NormalBondWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -412784980 +45: Setting the LD random seed to -303050753 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84606,7 +84654,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84627,22 +84675,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 16 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.4 +45: Time: 0.001 0.000 186.8 45: (ns/day) (hour/ns) -45: Performance: 447.244 0.054 +45: Performance: 311.704 0.077 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (5 ms) +45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (8 ms) 45: [ RUN ] BondedInteractionsTest.NormalAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1142064657 +45: Setting the LD random seed to -228639233 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84662,7 +84710,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84683,22 +84731,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 14 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.7 +45: Time: 0.000 0.000 185.8 45: (ns/day) (hour/ns) -45: Performance: 447.812 0.054 +45: Performance: 343.891 0.070 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalAngleWorks (5 ms) +45: [ OK ] BondedInteractionsTest.NormalAngleWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -394005 +45: Setting the LD random seed to -202443785 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84718,7 +84766,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84739,22 +84787,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 17 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.5 +45: Time: 0.000 0.000 184.3 45: (ns/day) (hour/ns) -45: Performance: 451.022 0.053 +45: Performance: 327.249 0.073 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (4 ms) +45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -572525622 +45: Setting the LD random seed to -25583657 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84774,7 +84822,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84799,18 +84847,18 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.4 +45: Time: 0.000 0.000 186.7 45: (ns/day) (hour/ns) -45: Performance: 471.590 0.051 +45: Performance: 326.380 0.074 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (5 ms) +45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -671867685 +45: Setting the LD random seed to 1922498303 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84830,7 +84878,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84851,16 +84899,16 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 16 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.8 +45: Time: 0.000 0.000 186.1 45: (ns/day) (hour/ns) -45: Performance: 447.385 0.054 +45: Performance: 337.143 0.071 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (5 ms) -45: [----------] 6 tests from BondedInteractionsTest (29 ms total) +45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (7 ms) +45: [----------] 6 tests from BondedInteractionsTest (43 ms total) 45: 45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 @@ -84884,7 +84932,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84911,10 +84959,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 198.9 +45: Time: 0.018 0.009 199.1 45: (ns/day) (hour/ns) -45: Performance: 336.722 0.071 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 164.103 0.146 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84936,15 +84984,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 198.5 +45: Time: 0.017 0.008 198.8 45: (ns/day) (hour/ns) -45: Performance: 334.545 0.072 +45: Performance: 173.824 0.138 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 trr version: GMX_trn_file (double precision) 45: 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 (16 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 (28 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_input.mdp]: @@ -84961,7 +85009,7 @@ 45: Number of degrees of freedom in T-Coupling group System is 33.00 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -84989,10 +85037,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 199.3 +45: Time: 0.018 0.009 199.3 45: (ns/day) (hour/ns) -45: Performance: 341.023 0.070 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 165.998 0.145 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85015,14 +85063,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.011 0.006 198.7 +45: Time: 0.016 0.008 198.7 45: (ns/day) (hour/ns) -45: Performance: 263.846 0.091 +45: Performance: 183.543 0.131 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 (17 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 (28 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_input.mdp]: @@ -85052,7 +85100,7 @@ 45: 45: 45: There were 4 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85079,10 +85127,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.005 199.1 +45: Time: 0.017 0.009 199.3 45: (ns/day) (hour/ns) -45: Performance: 317.718 0.076 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 169.237 0.142 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85104,14 +85152,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 198.0 +45: Time: 0.018 0.009 198.4 45: (ns/day) (hour/ns) -45: Performance: 387.318 0.062 +45: Performance: 158.013 0.152 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 (457 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 (712 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_input.mdp]: @@ -85136,7 +85184,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85164,10 +85212,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.100 0.050 199.9 +45: Time: 0.018 0.009 199.3 45: (ns/day) (hour/ns) -45: Performance: 29.220 0.821 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 163.052 0.147 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85190,15 +85238,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 197.3 +45: Time: 0.016 0.008 198.4 45: (ns/day) (hour/ns) -45: Performance: 330.477 0.073 +45: Performance: 185.785 0.129 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 (504 ms) -45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest (994 ms total) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 (708 ms) +45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest (1476 ms total) 45: 45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 @@ -85222,7 +85270,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85249,10 +85297,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.004 198.1 +45: Time: 0.014 0.007 198.6 45: (ns/day) (hour/ns) -45: Performance: 410.000 0.059 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 201.751 0.119 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85274,14 +85322,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 199.2 +45: Time: 0.015 0.008 199.4 45: (ns/day) (hour/ns) -45: Performance: 375.023 0.064 +45: Performance: 189.414 0.127 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 (15 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 (26 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_input.mdp]: @@ -85303,7 +85351,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85330,10 +85378,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.003 197.8 +45: Time: 0.015 0.008 198.4 45: (ns/day) (hour/ns) -45: Performance: 421.830 0.057 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 195.835 0.123 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85355,14 +85403,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 199.1 +45: Time: 0.015 0.008 199.3 45: (ns/day) (hour/ns) -45: Performance: 381.501 0.063 +45: Performance: 192.796 0.124 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 (15 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 (26 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_input.mdp]: @@ -85379,7 +85427,7 @@ 45: Number of degrees of freedom in T-Coupling group System is 33.00 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85407,10 +85455,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.004 198.1 +45: Time: 0.014 0.007 198.5 45: (ns/day) (hour/ns) -45: Performance: 412.256 0.058 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 212.099 0.113 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85433,14 +85481,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.004 199.1 +45: Time: 0.015 0.007 199.3 45: (ns/day) (hour/ns) -45: Performance: 411.911 0.058 +45: Performance: 201.420 0.119 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 (14 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 (24 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_input.mdp]: @@ -85457,7 +85505,7 @@ 45: Number of degrees of freedom in T-Coupling group System is 33.00 45: 45: There were 2 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85485,10 +85533,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 198.3 +45: Time: 0.018 0.009 198.6 45: (ns/day) (hour/ns) -45: Performance: 335.376 0.072 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 165.331 0.145 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85511,14 +85559,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 199.3 +45: Time: 0.016 0.008 198.4 45: (ns/day) (hour/ns) -45: Performance: 335.437 0.072 +45: Performance: 185.110 0.130 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 (16 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 (28 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_input.mdp]: @@ -85548,7 +85596,7 @@ 45: 45: 45: There were 4 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85575,10 +85623,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.005 198.3 +45: Time: 0.018 0.009 198.6 45: (ns/day) (hour/ns) -45: Performance: 317.819 0.076 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 163.760 0.147 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85600,14 +85648,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 199.2 +45: Time: 0.017 0.008 199.3 45: (ns/day) (hour/ns) -45: Performance: 368.092 0.065 +45: Performance: 176.596 0.136 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 (456 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 (713 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_input.mdp]: @@ -85637,7 +85685,7 @@ 45: 45: 45: There were 4 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85664,10 +85712,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.004 198.0 +45: Time: 0.020 0.010 198.7 45: (ns/day) (hour/ns) -45: Performance: 329.866 0.073 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 146.695 0.164 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85689,14 +85737,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 199.0 +45: Time: 0.022 0.011 199.4 45: (ns/day) (hour/ns) -45: Performance: 363.985 0.066 +45: Performance: 135.142 0.178 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 (456 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 (715 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_input.mdp]: @@ -85721,7 +85769,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85749,10 +85797,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.054 0.027 199.5 +45: Time: 0.017 0.008 198.4 45: (ns/day) (hour/ns) -45: Performance: 54.767 0.438 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 175.503 0.137 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85775,14 +85823,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.004 199.0 +45: Time: 0.016 0.008 199.3 45: (ns/day) (hour/ns) -45: Performance: 396.656 0.061 +45: Performance: 182.901 0.131 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 (477 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 (714 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_input.mdp]: @@ -85807,7 +85855,7 @@ 45: 45: 45: There were 3 notes -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85835,10 +85883,10 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.005 197.5 +45: Time: 0.059 0.029 199.4 45: (ns/day) (hour/ns) -45: Performance: 326.394 0.074 -45: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +45: Performance: 49.907 0.481 +45: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 45: The current CPU can measure timings more accurately than the code in 45: mdrun-test was configured to use. This might affect your simulation 45: speed as accurate timings are needed for load-balancing. @@ -85861,20 +85909,20 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 199.1 +45: Time: 0.027 0.014 199.5 45: (ns/day) (hour/ns) -45: Performance: 344.985 0.070 +45: Performance: 106.894 0.225 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 (458 ms) -45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest (1907 ms total) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 (743 ms) +45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest (2989 ms total) 45: 45: [----------] Global test environment tear-down -45: [==========] 24 tests from 7 test cases ran. (5065 ms total) +45: [==========] 24 tests from 7 test cases ran. (7687 ms total) 45: [ PASSED ] 24 tests. -45/54 Test #45: MdrunTests .......................... Passed 5.08 sec +45/54 Test #45: MdrunTests .......................... Passed 7.71 sec test 46 Start 46: MdrunNonIntegratorTests @@ -85894,9 +85942,9 @@ 46: 46: Coulomb LJ comb. SIMD Mcycles Mcycles/it. pairs/cycle 46: total useful -46: Ewald all geom. 4xM 29.475 29.4749 0.0359 0.0214 -46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (35 ms) -46: [----------] 1 test from NonbondedBenchTest (35 ms total) +46: Ewald all geom. 4xM 55.404 55.4043 0.0191 0.0114 +46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (56 ms) +46: [----------] 1 test from NonbondedBenchTest (56 ms total) 46: 46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 @@ -85924,7 +85972,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -85950,12 +85998,12 @@ 46: writing lowest energy coordinates. 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -4.79910463671044e+01 -46: Maximum force = 1.86297359432218e+02 on atom 13 -46: Norm of force = 8.77219865482098e+01 +46: Potential Energy = -4.79910463671056e+01 +46: Maximum force = 1.86297359432214e+02 on atom 13 +46: Norm of force = 8.77219865482122e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (470 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (730 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -85981,7 +86029,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86010,12 +86058,12 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -5.58622538633258e+01 -46: Maximum force = 4.27274822366616e+02 on atom 13 -46: Norm of force = 1.84530029253872e+02 +46: Potential Energy = -5.58622538633289e+01 +46: Maximum force = 4.27274822366534e+02 on atom 13 +46: Norm of force = 1.84530029253841e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (436 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (698 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -86041,7 +86089,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86067,13 +86115,13 @@ 46: writing lowest energy coordinates. 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 3.19376899751521e+02 +46: Potential Energy = 3.19376899751522e+02 46: Maximum force = 9.99884921009767e+03 on atom 9 46: Norm of force = 4.61669565054298e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (99 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (175 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -86103,7 +86151,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86132,13 +86180,13 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 1.51743018140930e+02 -46: Maximum force = 7.42089573409107e+03 on atom 9 -46: Norm of force = 3.56929298615739e+03 +46: Potential Energy = 1.51743018140927e+02 +46: Maximum force = 7.42089573409110e+03 on atom 9 +46: Norm of force = 3.56929298615738e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (99 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (187 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -86174,7 +86222,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86200,13 +86248,13 @@ 46: writing lowest energy coordinates. 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -1.56984193848274e+02 -46: Maximum force = 4.56923624626471e+02 on atom 17 -46: Norm of force = 1.83258377168359e+02 +46: Potential Energy = -1.56984193848273e+02 +46: Maximum force = 4.56923624626479e+02 on atom 17 +46: Norm of force = 1.83258377168365e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (15 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (26 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -86246,7 +86294,7 @@ 46: 46: 46: There were 5 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86275,14 +86323,14 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = -1.69410778678183e+02 -46: Maximum force = 2.18225948474167e+02 on atom 17 -46: Norm of force = 7.92068036537932e+01 +46: Potential Energy = -1.69410778678184e+02 +46: Maximum force = 2.18225948473997e+02 on atom 17 +46: Norm of force = 7.92068036537650e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (16 ms) -46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1135 ms total) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (27 ms) +46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1843 ms total) 46: 46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -86302,7 +86350,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86330,7 +86378,7 @@ 46: Norm of force = 1.63839399694378e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (4 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -86348,7 +86396,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86374,12 +86422,12 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients converged to Fmax < 10 in 0 steps -46: Potential Energy = -9.90642313893957e-01 -46: Maximum force = 2.57812909491105e+00 on atom 1 -46: Norm of force = 1.05251679559258e+00 +46: Potential Energy = -9.90642313893969e-01 +46: Maximum force = 2.57812909490791e+00 on atom 1 +46: Norm of force = 1.05251679559130e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (5 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -86403,7 +86451,7 @@ 46: There were 2 notes 46: 46: There was 1 warning -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86433,12 +86481,12 @@ 46: writing lowest energy coordinates. 46: 46: Low-Memory BFGS Minimizer converged to Fmax < 10 in 0 steps -46: Potential Energy = -9.90642313893957e-01 -46: Maximum force = 2.57812909491105e+00 on atom 1 -46: Norm of force = 1.05251679559258e+00 +46: Potential Energy = -9.90642313893969e-01 +46: Maximum force = 2.57812909490791e+00 on atom 1 +46: Norm of force = 1.05251679559130e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (4 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -86464,7 +86512,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86491,11 +86539,11 @@ 46: 46: Steepest Descents did not converge to Fmax < 10 in 5 steps. 46: Potential Energy = 3.19395484891519e+02 -46: Maximum force = 9.97041707197910e+03 on atom 9 +46: Maximum force = 9.97041707197911e+03 on atom 9 46: Norm of force = 4.62274878665467e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (98 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (188 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -86521,7 +86569,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86550,12 +86598,12 @@ 46: writing lowest energy coordinates. 46: 46: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -46: Potential Energy = 1.56258793899481e+02 +46: Potential Energy = 1.56258793899480e+02 46: Maximum force = 7.50181017480396e+03 on atom 9 46: Norm of force = 3.61390332564874e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (99 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (190 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -86587,7 +86635,7 @@ 46: There were 3 notes 46: 46: There was 1 warning -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86625,8 +86673,8 @@ 46: Norm of force = 6.06436286976268e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (98 ms) -46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (308 ms total) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (188 ms) +46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (584 ms total) 46: 46: [----------] 5 tests from NormalModesWorks/NormalModesTest 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/0 @@ -86654,7 +86702,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86694,7 +86742,7 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/0 (13 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/0 (17 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_1_input.mdp]: @@ -86729,7 +86777,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86769,7 +86817,7 @@ 46: Full matrix storage format, nrow=768, ncols=768 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/1 (1492 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/1 (2384 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_2_input.mdp]: @@ -86795,7 +86843,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86835,7 +86883,7 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/2 (426 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/2 (709 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_3_input.mdp]: @@ -86862,7 +86910,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86903,7 +86951,7 @@ 46: Full matrix storage format, nrow=9, ncols=9 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/3 (421 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/3 (702 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_4_input.mdp]: @@ -86923,7 +86971,7 @@ 46: 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -86971,8 +87019,8 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/4 (8 ms) -46: [----------] 5 tests from NormalModesWorks/NormalModesTest (2360 ms total) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/4 (13 ms) +46: [----------] 5 tests from NormalModesWorks/NormalModesTest (3825 ms total) 46: 46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -86996,7 +87044,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87023,10 +87071,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.009 0.004 198.4 +46: Time: 0.018 0.009 198.9 46: (ns/day) (hour/ns) -46: Performance: 341.347 0.070 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 160.339 0.150 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87047,18 +87095,18 @@ 46: trr version: GMX_trn_file (double precision) 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.9 +46: Time: 0.001 0.001 195.2 46: (ns/day) (hour/ns) -46: Performance: 2515.771 0.010 +46: Performance: 1919.341 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (11 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (20 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp]: @@ -87080,7 +87128,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87107,10 +87155,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 199.1 +46: Time: 0.018 0.009 199.4 46: (ns/day) (hour/ns) -46: Performance: 399.809 0.060 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 164.096 0.146 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87130,18 +87178,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 20 % of the run time was spent in pair search, +46: NOTE: 18 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.6 +46: Time: 0.001 0.001 195.0 46: (ns/day) (hour/ns) -46: Performance: 2743.748 0.009 +46: Performance: 1983.629 0.012 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (11 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (19 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp]: @@ -87158,7 +87206,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87186,10 +87234,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 198.0 +46: Time: 0.017 0.008 198.8 46: (ns/day) (hour/ns) -46: Performance: 438.650 0.055 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 175.632 0.137 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87210,18 +87258,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.9 +46: Time: 0.002 0.001 195.4 46: (ns/day) (hour/ns) -46: Performance: 2542.226 0.009 +46: Performance: 1877.150 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (10 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (19 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp]: @@ -87238,7 +87286,7 @@ 46: Number of degrees of freedom in T-Coupling group System is 33.00 46: 46: There were 2 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87266,10 +87314,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.008 0.004 198.1 +46: Time: 0.019 0.010 199.0 46: (ns/day) (hour/ns) -46: Performance: 378.677 0.063 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 154.078 0.156 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87290,18 +87338,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.0 +46: Time: 0.002 0.001 187.9 46: (ns/day) (hour/ns) -46: Performance: 2471.308 0.010 +46: Performance: 1825.726 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (11 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (20 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp]: @@ -87331,7 +87379,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87358,10 +87406,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.126 0.063 199.8 +46: Time: 0.020 0.010 198.8 46: (ns/day) (hour/ns) -46: Performance: 23.384 1.026 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 145.953 0.164 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87381,18 +87429,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.1 +46: Time: 0.002 0.001 195.6 46: (ns/day) (hour/ns) -46: Performance: 2243.205 0.011 +46: Performance: 1753.997 0.014 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (474 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (714 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp]: @@ -87422,7 +87470,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87449,10 +87497,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.019 0.010 199.6 +46: Time: 0.021 0.010 199.4 46: (ns/day) (hour/ns) -46: Performance: 154.274 0.156 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 141.642 0.169 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87476,14 +87524,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.0 +46: Time: 0.002 0.001 195.2 46: (ns/day) (hour/ns) -46: Performance: 2394.820 0.010 +46: Performance: 1803.860 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (419 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (705 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp]: @@ -87508,7 +87556,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87536,10 +87584,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 199.2 +46: Time: 0.017 0.009 198.4 46: (ns/day) (hour/ns) -46: Performance: 124.283 0.193 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 170.936 0.140 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87560,18 +87608,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 19 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.2 +46: Time: 0.002 0.001 195.6 46: (ns/day) (hour/ns) -46: Performance: 2208.598 0.011 +46: Performance: 1731.348 0.014 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (420 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (704 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp]: @@ -87596,7 +87644,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87624,10 +87672,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.096 0.048 199.8 +46: Time: 0.019 0.010 198.6 46: (ns/day) (hour/ns) -46: Performance: 30.720 0.781 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 152.178 0.158 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87648,18 +87696,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 45 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.4 +46: Time: 0.002 0.001 196.6 46: (ns/day) (hour/ns) -46: Performance: 2215.099 0.011 +46: Performance: 1249.992 0.019 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (460 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (705 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp]: @@ -87705,7 +87753,7 @@ 46: 46: 46: There were 6 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87733,10 +87781,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 198.3 +46: Time: 0.023 0.012 198.5 46: (ns/day) (hour/ns) -46: Performance: 242.858 0.099 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 126.736 0.189 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87760,14 +87808,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 196.3 +46: Time: 0.003 0.001 196.1 46: (ns/day) (hour/ns) -46: Performance: 1420.815 0.017 +46: Performance: 1037.201 0.023 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (30 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (48 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp]: @@ -87813,7 +87861,7 @@ 46: 46: 46: There were 6 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87841,10 +87889,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 198.3 +46: Time: 0.022 0.011 198.3 46: (ns/day) (hour/ns) -46: Performance: 243.330 0.099 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 130.975 0.183 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87864,18 +87912,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 196.5 +46: Time: 0.003 0.001 195.9 46: (ns/day) (hour/ns) -46: Performance: 1393.191 0.017 +46: Performance: 1024.409 0.023 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (30 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (47 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp]: @@ -87916,7 +87964,7 @@ 46: 46: 46: There were 5 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87945,10 +87993,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.3 +46: Time: 0.024 0.012 198.6 46: (ns/day) (hour/ns) -46: Performance: 253.730 0.095 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 121.333 0.198 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -87969,18 +88017,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 196.4 +46: Time: 0.003 0.001 195.9 46: (ns/day) (hour/ns) -46: Performance: 1376.392 0.017 +46: Performance: 989.104 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (63 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (106 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp]: @@ -88021,7 +88069,7 @@ 46: 46: 46: There were 5 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88050,10 +88098,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.007 198.6 +46: Time: 0.031 0.015 199.0 46: (ns/day) (hour/ns) -46: Performance: 220.441 0.109 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 94.968 0.253 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88074,19 +88122,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 196.4 +46: Time: 0.003 0.002 195.9 46: (ns/day) (hour/ns) -46: Performance: 1351.984 0.018 +46: Performance: 969.260 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (55 ms) -46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (1994 ms total) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (94 ms) +46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3201 ms total) 46: 46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -88119,7 +88167,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88148,10 +88196,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.9 +46: Time: 0.056 0.028 199.3 46: (ns/day) (hour/ns) -46: Performance: 252.893 0.095 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 52.460 0.457 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88175,14 +88223,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.9 +46: Time: 0.004 0.002 191.2 46: (ns/day) (hour/ns) -46: Performance: 1141.960 0.021 +46: Performance: 743.323 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (68 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp]: @@ -88213,7 +88261,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88242,10 +88290,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.9 +46: Time: 0.030 0.015 198.5 46: (ns/day) (hour/ns) -46: Performance: 261.713 0.092 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 95.810 0.250 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88265,18 +88313,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 191.1 +46: Time: 0.004 0.002 190.6 46: (ns/day) (hour/ns) -46: Performance: 1120.935 0.021 +46: Performance: 751.747 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (57 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp]: @@ -88307,7 +88355,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88336,10 +88384,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 197.9 +46: Time: 0.024 0.012 198.2 46: (ns/day) (hour/ns) -46: Performance: 269.326 0.089 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 122.336 0.196 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88359,18 +88407,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.9 +46: Time: 0.004 0.002 190.1 46: (ns/day) (hour/ns) -46: Performance: 1133.748 0.021 +46: Performance: 743.416 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (53 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp]: @@ -88401,7 +88449,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88430,10 +88478,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.6 +46: Time: 0.025 0.013 197.3 46: (ns/day) (hour/ns) -46: Performance: 262.006 0.092 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 116.640 0.206 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88453,18 +88501,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 191.0 +46: Time: 0.004 0.002 190.1 46: (ns/day) (hour/ns) -46: Performance: 1125.451 0.021 +46: Performance: 754.832 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (55 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp]: @@ -88495,7 +88543,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88524,10 +88572,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.0 +46: Time: 0.035 0.018 198.4 46: (ns/day) (hour/ns) -46: Performance: 255.563 0.094 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 83.609 0.287 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88547,18 +88595,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 191.0 +46: Time: 0.004 0.002 190.3 46: (ns/day) (hour/ns) -46: Performance: 1138.330 0.021 +46: Performance: 684.043 0.035 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (31 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (60 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp]: @@ -88589,7 +88634,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88618,10 +88663,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.8 +46: Time: 0.040 0.020 198.9 46: (ns/day) (hour/ns) -46: Performance: 263.546 0.091 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 72.241 0.332 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88641,18 +88686,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 191.3 +46: Time: 0.004 0.002 191.1 46: (ns/day) (hour/ns) -46: Performance: 1095.076 0.022 +46: Performance: 694.909 0.035 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (64 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp]: @@ -88683,7 +88725,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88712,10 +88754,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.9 +46: Time: 0.025 0.012 198.4 46: (ns/day) (hour/ns) -46: Performance: 264.199 0.091 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 118.885 0.202 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88735,18 +88777,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.8 +46: Time: 0.004 0.002 192.1 46: (ns/day) (hour/ns) -46: Performance: 1131.975 0.021 +46: Performance: 676.242 0.035 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (56 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp]: @@ -88777,7 +88816,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88806,10 +88845,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 197.4 +46: Time: 0.026 0.013 198.2 46: (ns/day) (hour/ns) -46: Performance: 271.050 0.089 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 110.592 0.217 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88829,18 +88868,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.1 +46: Time: 0.004 0.002 192.1 46: (ns/day) (hour/ns) -46: Performance: 1091.329 0.022 +46: Performance: 710.380 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (55 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp]: @@ -88871,7 +88907,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88900,10 +88936,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.9 +46: Time: 0.043 0.022 199.1 46: (ns/day) (hour/ns) -46: Performance: 253.323 0.095 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 68.315 0.351 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88923,18 +88959,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.9 +46: Time: 0.004 0.002 192.2 46: (ns/day) (hour/ns) -46: Performance: 1112.213 0.022 +46: Performance: 695.390 0.035 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (31 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (64 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp]: @@ -88965,7 +88998,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -88994,10 +89027,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 197.8 +46: Time: 0.030 0.015 198.8 46: (ns/day) (hour/ns) -46: Performance: 264.813 0.091 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 96.703 0.248 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89017,18 +89050,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 10 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.2 +46: Time: 0.004 0.002 191.8 46: (ns/day) (hour/ns) -46: Performance: 1098.554 0.022 +46: Performance: 729.911 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (31 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (56 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp]: @@ -89059,7 +89092,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89088,10 +89121,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.006 198.1 +46: Time: 0.036 0.018 198.9 46: (ns/day) (hour/ns) -46: Performance: 228.617 0.105 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 81.618 0.294 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89111,18 +89144,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 191.4 +46: Time: 0.004 0.002 188.2 46: (ns/day) (hour/ns) -46: Performance: 1116.692 0.021 +46: Performance: 715.826 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (32 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (59 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp]: @@ -89153,7 +89186,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89182,10 +89215,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 199.2 +46: Time: 0.049 0.025 199.7 46: (ns/day) (hour/ns) -46: Performance: 236.391 0.102 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 59.949 0.400 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89205,18 +89238,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 10 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 191.0 +46: Time: 0.004 0.002 191.2 46: (ns/day) (hour/ns) -46: Performance: 1127.165 0.021 +46: Performance: 780.512 0.031 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (31 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (64 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp]: @@ -89247,7 +89280,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89276,10 +89309,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.007 199.0 +46: Time: 0.024 0.012 199.3 46: (ns/day) (hour/ns) -46: Performance: 224.047 0.107 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 123.776 0.194 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89299,18 +89332,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 10 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.6 +46: Time: 0.004 0.002 191.0 46: (ns/day) (hour/ns) -46: Performance: 1088.609 0.022 +46: Performance: 729.999 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (32 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (53 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp]: @@ -89341,7 +89374,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89370,10 +89403,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.006 199.2 +46: Time: 0.023 0.012 199.3 46: (ns/day) (hour/ns) -46: Performance: 233.716 0.103 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 124.971 0.192 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89393,18 +89426,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.6 +46: Time: 0.004 0.002 191.4 46: (ns/day) (hour/ns) -46: Performance: 1130.154 0.021 +46: Performance: 761.785 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (32 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (51 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp]: @@ -89435,7 +89468,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89464,10 +89497,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.017 0.008 199.3 +46: Time: 0.022 0.011 199.3 46: (ns/day) (hour/ns) -46: Performance: 174.502 0.138 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 131.794 0.182 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89487,18 +89520,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.4 +46: Time: 0.004 0.002 191.6 46: (ns/day) (hour/ns) -46: Performance: 1104.193 0.022 +46: Performance: 771.270 0.031 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (34 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (52 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp]: @@ -89529,7 +89562,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89558,10 +89591,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.007 199.1 +46: Time: 0.028 0.014 199.4 46: (ns/day) (hour/ns) -46: Performance: 219.156 0.110 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 104.899 0.229 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89581,18 +89614,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 10 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.4 +46: Time: 0.004 0.002 190.8 46: (ns/day) (hour/ns) -46: Performance: 1104.269 0.022 +46: Performance: 735.983 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (32 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (54 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp]: @@ -89623,7 +89656,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89652,10 +89685,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 199.3 +46: Time: 0.023 0.012 199.3 46: (ns/day) (hour/ns) -46: Performance: 180.610 0.133 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 124.731 0.192 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89675,18 +89708,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.6 +46: Time: 0.004 0.002 190.1 46: (ns/day) (hour/ns) -46: Performance: 1127.806 0.021 +46: Performance: 647.500 0.037 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (33 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (54 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp]: @@ -89717,7 +89747,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89746,10 +89776,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.014 0.007 199.2 +46: Time: 0.024 0.012 199.2 46: (ns/day) (hour/ns) -46: Performance: 211.051 0.114 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 121.152 0.198 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89769,18 +89799,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.8 +46: Time: 0.004 0.002 189.9 46: (ns/day) (hour/ns) -46: Performance: 1115.029 0.022 +46: Performance: 675.611 0.036 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (33 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (60 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp]: @@ -89811,7 +89841,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89840,10 +89870,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 199.3 +46: Time: 0.024 0.012 199.3 46: (ns/day) (hour/ns) -46: Performance: 180.031 0.133 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 124.284 0.193 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89863,18 +89893,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.5 +46: Time: 0.004 0.002 189.9 46: (ns/day) (hour/ns) -46: Performance: 1090.567 0.022 +46: Performance: 697.971 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (34 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (57 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp]: @@ -89905,7 +89935,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89934,10 +89964,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.006 199.1 +46: Time: 0.027 0.014 199.4 46: (ns/day) (hour/ns) -46: Performance: 228.608 0.105 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 108.459 0.221 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -89957,18 +89987,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.2 +46: Time: 0.004 0.002 190.4 46: (ns/day) (hour/ns) -46: Performance: 1070.728 0.022 +46: Performance: 749.868 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (31 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (54 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp]: @@ -89999,7 +90029,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90028,10 +90058,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 199.4 +46: Time: 0.027 0.014 199.4 46: (ns/day) (hour/ns) -46: Performance: 183.498 0.131 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 108.603 0.221 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90051,18 +90081,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.8 +46: Time: 0.004 0.002 190.2 46: (ns/day) (hour/ns) -46: Performance: 1127.607 0.021 +46: Performance: 725.324 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (34 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (54 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp]: @@ -90093,7 +90123,7 @@ 46: 46: 46: There were 4 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90122,10 +90152,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.014 0.007 199.2 +46: Time: 0.025 0.012 199.4 46: (ns/day) (hour/ns) -46: Performance: 209.393 0.115 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 119.034 0.202 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90149,14 +90179,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.6 +46: Time: 0.004 0.002 190.2 46: (ns/day) (hour/ns) -46: Performance: 1021.604 0.023 +46: Performance: 736.330 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (32 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (53 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp]: @@ -90182,7 +90212,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90212,10 +90242,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.017 0.008 198.2 +46: Time: 0.023 0.012 198.4 46: (ns/day) (hour/ns) -46: Performance: 173.294 0.138 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 124.587 0.193 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90236,18 +90266,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.3 +46: Time: 0.004 0.002 190.6 46: (ns/day) (hour/ns) -46: Performance: 1049.987 0.023 +46: Performance: 721.778 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (62 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (97 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp]: @@ -90273,7 +90303,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90303,10 +90333,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.006 197.7 +46: Time: 0.023 0.012 198.4 46: (ns/day) (hour/ns) -46: Performance: 229.838 0.104 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 125.750 0.191 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90327,18 +90357,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.0 +46: Time: 0.004 0.002 190.2 46: (ns/day) (hour/ns) -46: Performance: 1037.834 0.023 +46: Performance: 728.502 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (60 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (97 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp]: @@ -90364,7 +90394,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90394,10 +90424,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.013 0.006 198.0 +46: Time: 0.022 0.011 196.9 46: (ns/day) (hour/ns) -46: Performance: 229.596 0.105 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 130.062 0.185 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90418,18 +90448,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.1 +46: Time: 0.004 0.002 191.0 46: (ns/day) (hour/ns) -46: Performance: 1080.129 0.022 +46: Performance: 696.509 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (59 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (96 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp]: @@ -90455,7 +90485,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90485,10 +90515,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.021 0.010 198.7 +46: Time: 0.021 0.011 198.2 46: (ns/day) (hour/ns) -46: Performance: 140.317 0.171 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 135.783 0.177 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90509,18 +90539,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.0 +46: Time: 0.004 0.002 190.4 46: (ns/day) (hour/ns) -46: Performance: 1078.201 0.022 +46: Performance: 736.535 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (63 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (97 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp]: @@ -90546,7 +90576,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90576,10 +90606,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 197.9 +46: Time: 0.052 0.026 199.2 46: (ns/day) (hour/ns) -46: Performance: 237.554 0.101 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 56.483 0.425 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90600,18 +90630,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.3 +46: Time: 0.004 0.002 189.5 46: (ns/day) (hour/ns) -46: Performance: 1064.391 0.023 +46: Performance: 737.347 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (59 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (111 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp]: @@ -90637,7 +90667,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90667,10 +90697,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 197.9 +46: Time: 0.028 0.014 198.7 46: (ns/day) (hour/ns) -46: Performance: 237.853 0.101 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 102.785 0.233 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90691,18 +90721,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.3 +46: Time: 0.004 0.002 190.9 46: (ns/day) (hour/ns) -46: Performance: 1067.573 0.022 +46: Performance: 702.634 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (59 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (99 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp]: @@ -90728,7 +90758,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90758,10 +90788,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 198.4 +46: Time: 0.023 0.012 198.4 46: (ns/day) (hour/ns) -46: Performance: 182.356 0.132 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 124.934 0.192 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90782,18 +90812,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.8 +46: Time: 0.004 0.002 190.4 46: (ns/day) (hour/ns) -46: Performance: 1063.464 0.023 +46: Performance: 734.320 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (60 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (97 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp]: @@ -90819,7 +90849,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90849,10 +90879,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 197.7 +46: Time: 0.021 0.011 198.2 46: (ns/day) (hour/ns) -46: Performance: 244.570 0.098 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 136.654 0.176 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90873,18 +90903,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 189.1 +46: Time: 0.004 0.002 190.1 46: (ns/day) (hour/ns) -46: Performance: 1052.269 0.023 +46: Performance: 711.845 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (59 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (96 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp]: @@ -90910,7 +90940,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90940,10 +90970,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.629 0.314 199.9 +46: Time: 0.023 0.012 197.7 46: (ns/day) (hour/ns) -46: Performance: 4.671 5.138 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 124.610 0.193 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -90964,18 +90994,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 190.9 +46: Time: 0.004 0.002 189.6 46: (ns/day) (hour/ns) -46: Performance: 1080.829 0.022 +46: Performance: 708.328 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (367 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (98 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp]: @@ -91001,7 +91031,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -91031,10 +91061,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.017 0.009 198.5 +46: Time: 0.050 0.025 199.2 46: (ns/day) (hour/ns) -46: Performance: 171.950 0.140 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 58.788 0.408 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -91055,18 +91085,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 191.2 +46: Time: 0.004 0.002 190.1 46: (ns/day) (hour/ns) -46: Performance: 1107.179 0.022 +46: Performance: 697.693 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (61 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (110 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp]: @@ -91092,7 +91122,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -91122,10 +91152,10 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.012 0.006 198.0 +46: Time: 0.054 0.027 199.1 46: (ns/day) (hour/ns) -46: Performance: 232.928 0.103 -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Performance: 53.793 0.446 +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -91146,19 +91176,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 11 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 191.1 +46: Time: 0.004 0.002 189.0 46: (ns/day) (hour/ns) -46: Performance: 1087.564 0.022 +46: Performance: 737.531 0.033 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (58 ms) -46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (1661 ms total) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (115 ms) +46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (2366 ms total) 46: 46: [----------] 2 tests from Angles1/SimpleMdrunTest 46: [ RUN ] Angles1/SimpleMdrunTest.WithinTolerances/0 @@ -91187,7 +91217,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -91214,12 +91244,12 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.005 198.7 +46: Time: 0.019 0.010 198.7 46: (ns/day) (hour/ns) -46: Performance: 823.442 0.029 +46: Performance: 456.277 0.053 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_0.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 5 time 0.020 Reading energy frame 6 time 0.024 Reading energy frame 7 time 0.028 Reading energy frame 8 time 0.032 Reading energy frame 9 time 0.036 Reading energy frame 10 time 0.040 Reading energy frame 11 time 0.044 Reading energy frame 12 time 0.048 Reading energy frame 13 time 0.050 Last energy frame read 13 time 0.050 -46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/0 (12 ms) +46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/0 (20 ms) 46: [ RUN ] Angles1/SimpleMdrunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_1_input.mdp]: @@ -91246,7 +91276,7 @@ 46: 46: 46: There were 3 notes -46: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +46: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 46: The current CPU can measure timings more accurately than the code in 46: mdrun-non-integrator-test was configured to use. This might affect your simulation 46: speed as accurate timings are needed for load-balancing. @@ -91273,18 +91303,18 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 199.4 +46: Time: 0.024 0.012 199.5 46: (ns/day) (hour/ns) -46: Performance: 792.295 0.030 +46: Performance: 362.522 0.066 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 5 time 0.020 Reading energy frame 6 time 0.024 Reading energy frame 7 time 0.028 Reading energy frame 8 time 0.032 Reading energy frame 9 time 0.036 Reading energy frame 10 time 0.040 Reading energy frame 11 time 0.044 Reading energy frame 12 time 0.048 Reading energy frame 13 time 0.050 Last energy frame read 13 time 0.050 -46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/1 (11 ms) -46: [----------] 2 tests from Angles1/SimpleMdrunTest (24 ms total) +46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/1 (23 ms) +46: [----------] 2 tests from Angles1/SimpleMdrunTest (43 ms total) 46: 46: [----------] Global test environment tear-down -46: [==========] 65 tests from 7 test cases ran. (7518 ms total) +46: [==========] 65 tests from 7 test cases ran. (11918 ms total) 46: [ PASSED ] 65 tests. -46/54 Test #46: MdrunNonIntegratorTests ............. Passed 7.54 sec +46/54 Test #46: MdrunNonIntegratorTests ............. Passed 11.95 sec test 47 Start 47: MdrunTpiTests @@ -91301,7 +91331,7 @@ 47: Excluding 2 bonded neighbours molecule type 'SOL' 47: Excluding 3 bonded neighbours molecule type 'methane' 47: Number of degrees of freedom in T-Coupling group System is 1308.00 -47: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +47: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 47: The current CPU can measure timings more accurately than the code in 47: mdrun-tpi-test was configured to use. This might affect your simulation 47: speed as accurate timings are needed for load-balancing. @@ -91323,7 +91353,7 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (456 ms) +47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (719 ms) 47: [ RUN ] Simple/TpiTest.ReproducesOutput/1 47: Ignoring obsolete mdp entry 'ns_type' 47: Generated 331705 of the 331705 non-bonded parameter combinations @@ -91332,7 +91362,7 @@ 47: Excluding 2 bonded neighbours molecule type 'SOL' 47: Excluding 3 bonded neighbours molecule type 'methane' 47: Number of degrees of freedom in T-Coupling group System is 1308.00 -47: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +47: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 47: The current CPU can measure timings more accurately than the code in 47: mdrun-tpi-test was configured to use. This might affect your simulation 47: speed as accurate timings are needed for load-balancing. @@ -91354,13 +91384,13 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (440 ms) -47: [----------] 2 tests from Simple/TpiTest (896 ms total) +47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (699 ms) +47: [----------] 2 tests from Simple/TpiTest (1418 ms total) 47: 47: [----------] Global test environment tear-down -47: [==========] 2 tests from 1 test case ran. (896 ms total) +47: [==========] 2 tests from 1 test case ran. (1418 ms total) 47: [ PASSED ] 2 tests. -47/54 Test #47: MdrunTpiTests ....................... Passed 0.91 sec +47/54 Test #47: MdrunTpiTests ....................... Passed 1.43 sec test 48 Start 48: MdrunMpiTests @@ -91375,7 +91405,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -149291054 +48: Setting the LD random seed to 1864087539 48: Generated 3 of the 3 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 3 of the 3 1-4 parameter combinations @@ -91394,7 +91424,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91414,16 +91444,16 @@ 48: 0 steps, 0.0 ps. 48: 48: NOTE: 24 % of the run time was spent in domain decomposition, -48: 17 % of the run time was spent in pair search, +48: 19 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 320.6 +48: Time: 0.001 0.000 312.5 48: (ns/day) (hour/ns) -48: Performance: 303.535 0.079 +48: Performance: 238.290 0.101 48: This run will generate roughly 0 Mb of data -48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (34 ms) -48: [----------] 1 test from DomainDecompositionSpecialCasesTest (34 ms total) +48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (26 ms) +48: [----------] 1 test from DomainDecompositionSpecialCasesTest (26 ms total) 48: 48: [----------] 4 tests from MimicTest 48: [ RUN ] MimicTest.OneQuantumMol @@ -91432,7 +91462,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -558694409 +48: Setting the LD random seed to -1377840577 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -91451,7 +91481,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91472,27 +91502,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 19 % of the run time was spent in domain decomposition, -48: 15 % of the run time was spent in pair search, +48: NOTE: 22 % of the run time was spent in domain decomposition, +48: 14 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: -48: NOTE: 6 % of the run time was spent communicating energies, -48: you might want to increase some nst* mdp options -48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 380.0 +48: Time: 0.002 0.000 383.5 48: (ns/day) (hour/ns) -48: Performance: 258.007 0.093 +48: Performance: 181.988 0.132 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.OneQuantumMol (5 ms) +48: [ OK ] MimicTest.OneQuantumMol (8 ms) 48: [ RUN ] MimicTest.AllQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -268444161 +48: Setting the LD random seed to 1944043003 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -91511,7 +91538,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91532,27 +91559,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 22 % of the run time was spent in domain decomposition, -48: 12 % of the run time was spent in pair search, +48: NOTE: 26 % of the run time was spent in domain decomposition, +48: 11 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: -48: NOTE: 5 % of the run time was spent communicating energies, -48: you might want to increase some nst* mdp options -48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 380.0 +48: Time: 0.002 0.000 381.0 48: (ns/day) (hour/ns) -48: Performance: 293.214 0.082 +48: Performance: 215.749 0.111 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.AllQuantumMol (5 ms) +48: [ OK ] MimicTest.AllQuantumMol (7 ms) 48: [ RUN ] MimicTest.TwoQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -136167698 +48: Setting the LD random seed to -279185489 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -91571,7 +91595,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91592,24 +91616,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 22 % of the run time was spent in domain decomposition, -48: 17 % of the run time was spent in pair search, +48: NOTE: 25 % of the run time was spent in domain decomposition, +48: 15 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 381.1 +48: Time: 0.002 0.000 382.4 48: (ns/day) (hour/ns) -48: Performance: 286.057 0.084 +48: Performance: 202.332 0.119 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.TwoQuantumMol (5 ms) +48: [ OK ] MimicTest.TwoQuantumMol (7 ms) 48: [ RUN ] MimicTest.BondCuts 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -37859969 +48: Setting the LD random seed to -1113622531 48: Generated 2211 of the 2211 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 2211 of the 2211 1-4 parameter combinations @@ -91628,7 +91652,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91649,22 +91673,25 @@ 48: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 19 % of the run time was spent in domain decomposition, +48: NOTE: 18 % of the run time was spent in domain decomposition, 48: 11 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: +48: NOTE: 6 % of the run time was spent communicating energies, +48: you might want to increase some nst* mdp options +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.000 385.7 +48: Time: 0.002 0.001 383.3 48: (ns/day) (hour/ns) -48: Performance: 214.165 0.112 +48: Performance: 139.716 0.172 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 48: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 48: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 48: Note that mdrun will redetermine rlist based on the actual pair-list setup 48: This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.BondCuts (18 ms) -48: [----------] 4 tests from MimicTest (33 ms total) +48: [ OK ] MimicTest.BondCuts (31 ms) +48: [----------] 4 tests from MimicTest (53 ms total) 48: 48: [----------] 1 test from MultiSimTerminationTest 48: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -91673,7 +91700,7 @@ 48: 48: [----------] 3 tests from PmeTest 48: [ RUN ] PmeTest.ReproducesEnergies -48: Setting the LD random seed to 2130668019 +48: Setting the LD random seed to -270639633 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -91693,7 +91720,7 @@ 48: 48: 48: There were 2 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91723,11 +91750,11 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.059 0.015 398.5 +48: Time: 0.105 0.026 399.1 48: (ns/day) (hour/ns) -48: Performance: 122.228 0.196 +48: Performance: 68.985 0.348 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91750,11 +91777,11 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.060 0.015 398.9 +48: Time: 0.092 0.023 399.0 48: (ns/day) (hour/ns) -48: Performance: 121.182 0.198 +48: Performance: 78.600 0.305 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91777,18 +91804,18 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.057 0.014 398.4 +48: Time: 0.098 0.024 399.0 48: (ns/day) (hour/ns) -48: Performance: 126.565 0.190 +48: Performance: 74.087 0.324 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (198 ms) +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (309 ms) 48: [ RUN ] PmeTest.ScalesTheBox 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 1876550302 +48: Setting the LD random seed to -1084227922 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -91808,7 +91835,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91829,9 +91856,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.001 375.3 +48: Time: 0.004 0.001 377.5 48: (ns/day) (hour/ns) -48: Performance: 134.482 0.178 +48: Performance: 87.035 0.276 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -91840,14 +91867,14 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBox (10 ms) +48: [ OK ] PmeTest.ScalesTheBox (17 ms) 48: [ RUN ] PmeTest.ScalesTheBoxWithWalls 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -17600666 +48: Setting the LD random seed to -907051338 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -91868,7 +91895,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91889,9 +91916,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.009 0.002 388.9 +48: Time: 0.013 0.003 388.7 48: (ns/day) (hour/ns) -48: Performance: 37.833 0.634 +48: Performance: 25.079 0.957 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -91900,8 +91927,8 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBoxWithWalls (466 ms) -48: [----------] 3 tests from PmeTest (675 ms total) +48: [ OK ] PmeTest.ScalesTheBoxWithWalls (639 ms) +48: [----------] 3 tests from PmeTest (966 ms total) 48: 48: [----------] 1 test from ReplicaExchangeTerminationTest 48: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -91934,7 +91961,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -91960,12 +91987,12 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -4.79910463671045e+01 -48: Maximum force = 1.86297359432217e+02 on atom 13 -48: Norm of force = 8.77219865482095e+01 +48: Potential Energy = -4.79910463671058e+01 +48: Maximum force = 1.86297359432215e+02 on atom 13 +48: Norm of force = 8.77219865482121e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (426 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (711 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -91991,7 +92018,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92020,12 +92047,12 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -5.58622538633254e+01 -48: Maximum force = 4.27274822366629e+02 on atom 13 -48: Norm of force = 1.84530029253876e+02 +48: Potential Energy = -5.58622538633292e+01 +48: Maximum force = 4.27274822366512e+02 on atom 13 +48: Norm of force = 1.84530029253833e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (420 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (704 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -92051,7 +92078,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92078,12 +92105,12 @@ 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. 48: Potential Energy = 3.19376899751522e+02 -48: Maximum force = 9.99884921009768e+03 on atom 9 +48: Maximum force = 9.99884921009767e+03 on atom 9 48: Norm of force = 4.61669565054298e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (104 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (179 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -92113,7 +92140,7 @@ 48: 48: 48: There were 4 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92142,13 +92169,13 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = 1.51743018140930e+02 -48: Maximum force = 7.42089573409108e+03 on atom 9 -48: Norm of force = 3.56929298615740e+03 +48: Potential Energy = 1.51743018140927e+02 +48: Maximum force = 7.42089573409110e+03 on atom 9 +48: Norm of force = 3.56929298615739e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (104 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (182 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -92184,7 +92211,7 @@ 48: 48: 48: There were 4 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92210,13 +92237,13 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -1.56984193848274e+02 -48: Maximum force = 4.56923624626471e+02 on atom 17 -48: Norm of force = 1.83258377168359e+02 +48: Potential Energy = -1.56984193848273e+02 +48: Maximum force = 4.56923624626543e+02 on atom 17 +48: Norm of force = 1.83258377168372e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (17 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (26 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -92256,7 +92283,7 @@ 48: 48: 48: There were 5 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92285,14 +92312,14 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = -1.69410778678183e+02 -48: Maximum force = 2.18225948474167e+02 on atom 17 -48: Norm of force = 7.92068036537932e+01 +48: Potential Energy = -1.69410778678184e+02 +48: Maximum force = 2.18225948473997e+02 on atom 17 +48: Norm of force = 7.92068036537650e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (17 ms) -48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1088 ms total) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (28 ms) +48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1830 ms total) 48: 48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -92312,7 +92339,7 @@ 48: Number of degrees of freedom in T-Coupling group System is 33.00 48: 48: There were 2 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92340,7 +92367,7 @@ 48: Norm of force = 1.63839399694378e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (5 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (8 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -92358,7 +92385,7 @@ 48: Number of degrees of freedom in T-Coupling group System is 33.00 48: 48: There were 2 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92384,12 +92411,12 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients converged to Fmax < 10 in 0 steps -48: Potential Energy = -9.90642313893957e-01 -48: Maximum force = 2.57812909491105e+00 on atom 3 -48: Norm of force = 1.05251679559258e+00 +48: Potential Energy = -9.90642313893969e-01 +48: Maximum force = 2.57812909490791e+00 on atom 3 +48: Norm of force = 1.05251679559130e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (4 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (7 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -92414,7 +92441,7 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (2 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (4 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -92440,7 +92467,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92466,12 +92493,12 @@ 48: writing lowest energy coordinates. 48: 48: Steepest Descents did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = 3.19395484891520e+02 +48: Potential Energy = 3.19395484891519e+02 48: Maximum force = 9.97041707197911e+03 on atom 9 48: Norm of force = 4.62274878665467e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (107 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (183 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -92497,7 +92524,7 @@ 48: 48: 48: There were 3 notes -48: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +48: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 48: The current CPU can measure timings more accurately than the code in 48: mdrun-mpi-test was configured to use. This might affect your simulation 48: speed as accurate timings are needed for load-balancing. @@ -92526,12 +92553,12 @@ 48: writing lowest energy coordinates. 48: 48: Polak-Ribiere Conjugate Gradients did not converge to Fmax < 10 in 5 steps. -48: Potential Energy = 1.56258793899481e+02 +48: Potential Energy = 1.56258793899480e+02 48: Maximum force = 7.50181017480396e+03 on atom 9 48: Norm of force = 3.61390332564874e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (105 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (187 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -92564,16 +92591,16 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (97 ms) -48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (321 ms total) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (178 ms) +48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (567 ms total) 48: 48: [----------] Global test environment tear-down -48: [==========] 22 tests from 7 test cases ran. (2151 ms total) +48: [==========] 22 tests from 7 test cases ran. (3442 ms total) 48: [ PASSED ] 22 tests. 48: 48: YOU HAVE 4 DISABLED TESTS 48: -48/54 Test #48: MdrunMpiTests ....................... Passed 2.16 sec +48/54 Test #48: MdrunMpiTests ....................... Passed 3.46 sec test 49 Start 49: MdrunMpiCoordinationTestsOneRank @@ -92603,7 +92630,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92627,9 +92654,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.037 0.037 99.9 +49: Time: 0.014 0.014 99.6 49: (ns/day) (hour/ns) -49: Performance: 40.159 0.598 +49: Performance: 107.031 0.224 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92650,7 +92677,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92674,9 +92701,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 315.533 0.076 +49: Performance: 132.243 0.181 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92699,7 +92726,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92723,9 +92750,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 297.785 0.081 +49: Performance: 144.864 0.166 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92748,7 +92775,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92772,9 +92799,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 309.128 0.078 +49: Performance: 125.813 0.191 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -92797,7 +92824,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92821,9 +92848,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 328.438 0.073 +49: Performance: 139.882 0.172 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -92846,7 +92873,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92870,13 +92897,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 299.031 0.080 +49: Performance: 145.053 0.165 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (115 ms) -49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (116 ms total) +49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (118 ms) +49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (118 ms total) 49: 49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -92900,7 +92927,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92924,9 +92951,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 325.711 0.074 +49: Performance: 143.766 0.167 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92947,7 +92974,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -92971,9 +92998,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 332.014 0.072 +49: Performance: 118.637 0.202 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92996,7 +93023,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93020,9 +93047,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 322.533 0.074 +49: Performance: 143.343 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93045,7 +93072,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93069,9 +93096,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 333.147 0.072 +49: Performance: 140.319 0.171 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -93094,7 +93121,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93118,9 +93145,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 320.718 0.075 +49: Performance: 137.253 0.175 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -93143,7 +93170,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93167,12 +93194,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 303.401 0.079 +49: Performance: 137.538 0.174 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (51 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (100 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -93194,7 +93221,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93218,9 +93245,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 287.498 0.083 +49: Performance: 136.683 0.176 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93241,7 +93268,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93265,9 +93292,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 346.659 0.069 +49: Performance: 144.650 0.166 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93290,7 +93317,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93314,9 +93341,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 264.169 0.091 +49: Performance: 138.503 0.173 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93339,7 +93366,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93363,9 +93390,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 323.443 0.074 +49: Performance: 132.159 0.182 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -93388,7 +93415,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93412,9 +93439,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 325.736 0.074 +49: Performance: 142.823 0.168 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -93437,7 +93464,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93461,12 +93488,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 314.907 0.076 +49: Performance: 145.107 0.165 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (98 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -93488,7 +93515,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93512,9 +93539,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 322.393 0.074 +49: Performance: 146.978 0.163 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93535,7 +93562,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93559,9 +93586,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 311.594 0.077 +49: Performance: 141.320 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93584,7 +93611,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93608,9 +93635,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 98.8 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 297.861 0.081 +49: Performance: 127.113 0.189 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93633,7 +93660,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93657,9 +93684,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 292.363 0.082 +49: Performance: 137.918 0.174 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -93682,7 +93709,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93706,9 +93733,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 297.617 0.081 +49: Performance: 136.944 0.175 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -93731,7 +93758,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93755,12 +93782,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 262.630 0.091 +49: Performance: 135.911 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (54 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (99 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -93777,7 +93804,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93802,9 +93829,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 288.735 0.083 +49: Performance: 136.803 0.175 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93820,7 +93847,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93845,9 +93872,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 325.404 0.074 +49: Performance: 151.910 0.158 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93865,7 +93892,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93890,9 +93917,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 300.687 0.080 +49: Performance: 149.038 0.161 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93910,7 +93937,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93935,9 +93962,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 296.016 0.081 +49: Performance: 138.224 0.174 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -93955,7 +93982,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -93980,9 +94007,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 296.809 0.081 +49: Performance: 140.125 0.171 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -94000,7 +94027,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94025,12 +94052,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 334.743 0.072 +49: Performance: 133.771 0.179 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (54 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (99 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -94047,7 +94074,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94072,9 +94099,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 323.800 0.074 +49: Performance: 149.527 0.161 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94090,7 +94117,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94115,9 +94142,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 304.224 0.079 +49: Performance: 131.418 0.183 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94135,7 +94162,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94160,9 +94187,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 263.740 0.091 +49: Performance: 143.678 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94180,7 +94207,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94205,9 +94232,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 291.608 0.082 +49: Performance: 141.473 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -94225,7 +94252,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94250,9 +94277,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.5 +49: Time: 0.013 0.013 99.6 49: (ns/day) (hour/ns) -49: Performance: 229.414 0.105 +49: Performance: 114.924 0.209 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -94270,7 +94297,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94295,12 +94322,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 331.169 0.072 +49: Performance: 126.730 0.189 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (55 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (102 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -94317,7 +94344,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94342,9 +94369,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 307.148 0.078 +49: Performance: 130.738 0.184 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94360,7 +94387,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94385,9 +94412,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 328.156 0.073 +49: Performance: 138.114 0.174 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94405,7 +94432,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94430,9 +94457,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.1 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 340.211 0.071 +49: Performance: 117.753 0.204 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94450,7 +94477,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94475,9 +94502,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 347.714 0.069 +49: Performance: 141.308 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -94495,7 +94522,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94520,9 +94547,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 327.148 0.073 +49: Performance: 150.422 0.160 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -94540,7 +94567,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94565,12 +94592,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.023 0.023 99.6 49: (ns/day) (hour/ns) -49: Performance: 334.853 0.072 +49: Performance: 62.584 0.383 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (114 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -94591,7 +94618,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94616,9 +94643,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 308.736 0.078 +49: Performance: 145.406 0.165 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94638,7 +94665,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94663,9 +94690,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 343.416 0.070 +49: Performance: 136.726 0.176 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94687,7 +94714,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94712,9 +94739,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 296.900 0.081 +49: Performance: 142.667 0.168 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94736,7 +94763,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94761,9 +94788,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 317.104 0.076 +49: Performance: 153.315 0.157 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -94785,7 +94812,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94810,9 +94837,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.1 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 301.477 0.080 +49: Performance: 145.652 0.165 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -94834,7 +94861,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94859,12 +94886,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 327.684 0.073 +49: Performance: 123.681 0.194 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (99 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -94892,7 +94919,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94917,9 +94944,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 333.888 0.072 +49: Performance: 149.189 0.161 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94946,7 +94973,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -94971,9 +94998,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 298.541 0.080 +49: Performance: 99.108 0.242 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95002,7 +95029,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95027,9 +95054,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 296.246 0.081 +49: Performance: 139.366 0.172 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95058,7 +95085,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95083,9 +95110,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.7 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 332.759 0.072 +49: Performance: 149.549 0.160 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -95114,7 +95141,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95139,9 +95166,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.018 0.018 99.7 49: (ns/day) (hour/ns) -49: Performance: 315.471 0.076 +49: Performance: 83.597 0.287 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -95170,7 +95197,7 @@ 49: There were 3 notes 49: 49: There was 1 warning -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95195,12 +95222,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.041 0.041 99.9 49: (ns/day) (hour/ns) -49: Performance: 327.143 0.073 +49: Performance: 35.422 0.678 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (141 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -95221,7 +95248,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95246,9 +95273,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.024 0.024 99.8 49: (ns/day) (hour/ns) -49: Performance: 329.794 0.073 +49: Performance: 61.054 0.393 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95268,7 +95295,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95293,9 +95320,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 338.033 0.071 +49: Performance: 142.287 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95317,7 +95344,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95342,9 +95369,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 296.035 0.081 +49: Performance: 160.677 0.149 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95366,7 +95393,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95391,9 +95418,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.2 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 323.997 0.074 +49: Performance: 137.098 0.175 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: @@ -95415,7 +95442,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95440,9 +95467,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 300.779 0.080 +49: Performance: 147.875 0.162 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: @@ -95464,7 +95491,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95489,12 +95516,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 290.868 0.083 +49: Performance: 142.084 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (110 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -95511,7 +95538,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95536,9 +95563,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 322.816 0.074 +49: Performance: 151.090 0.159 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95554,7 +95581,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95579,9 +95606,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 311.300 0.077 +49: Performance: 131.474 0.183 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95599,7 +95626,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95624,9 +95651,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 291.047 0.082 +49: Performance: 133.957 0.179 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95644,7 +95671,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95669,9 +95696,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 320.056 0.075 +49: Performance: 134.238 0.179 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: @@ -95689,7 +95716,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95714,9 +95741,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.3 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 339.144 0.071 +49: Performance: 142.464 0.168 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: @@ -95734,7 +95761,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95759,12 +95786,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 308.557 0.078 +49: Performance: 146.341 0.164 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (100 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -95781,7 +95808,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95806,9 +95833,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 310.762 0.077 +49: Performance: 126.383 0.190 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95824,7 +95851,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95849,9 +95876,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 329.366 0.073 +49: Performance: 100.736 0.238 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95869,7 +95896,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95894,9 +95921,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 305.631 0.079 +49: Performance: 133.474 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95914,7 +95941,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95939,9 +95966,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 342.841 0.070 +49: Performance: 130.961 0.183 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: @@ -95959,7 +95986,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -95984,9 +96011,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 314.384 0.076 +49: Performance: 126.539 0.190 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: @@ -96004,7 +96031,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96029,12 +96056,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.016 0.016 99.7 49: (ns/day) (hour/ns) -49: Performance: 304.358 0.079 +49: Performance: 91.013 0.264 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (52 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (112 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -96051,7 +96078,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96076,9 +96103,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 323.570 0.074 +49: Performance: 140.652 0.171 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96094,7 +96121,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96119,9 +96146,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 321.675 0.075 +49: Performance: 140.804 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96139,7 +96166,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96164,9 +96191,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 300.590 0.080 +49: Performance: 153.128 0.157 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96184,7 +96211,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96209,9 +96236,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 311.134 0.077 +49: Performance: 146.759 0.164 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: @@ -96229,7 +96256,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96254,9 +96281,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 304.656 0.079 +49: Performance: 143.682 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: @@ -96274,7 +96301,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96299,12 +96326,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.3 49: (ns/day) (hour/ns) -49: Performance: 322.519 0.074 +49: Performance: 141.267 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (53 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (97 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -96326,7 +96353,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96350,9 +96377,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.011 0.011 99.7 49: (ns/day) (hour/ns) -49: Performance: 320.286 0.075 +49: Performance: 128.753 0.186 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96373,7 +96400,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96397,9 +96424,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 314.253 0.076 +49: Performance: 133.367 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96422,7 +96449,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96446,9 +96473,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 297.568 0.081 +49: Performance: 133.632 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96471,7 +96498,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96495,9 +96522,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.8 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 261.600 0.092 +49: Performance: 133.298 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: @@ -96520,7 +96547,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96544,9 +96571,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.009 0.009 99.8 49: (ns/day) (hour/ns) -49: Performance: 269.072 0.089 +49: Performance: 155.657 0.154 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: @@ -96569,7 +96596,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96593,12 +96620,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.8 +49: Time: 0.037 0.037 99.9 49: (ns/day) (hour/ns) -49: Performance: 262.757 0.091 +49: Performance: 39.419 0.609 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (56 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (142 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -96620,7 +96647,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96644,9 +96671,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 297.836 0.081 +49: Performance: 136.683 0.176 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96667,7 +96694,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96691,9 +96718,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 312.026 0.077 +49: Performance: 124.465 0.193 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96716,7 +96743,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96740,9 +96767,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 314.468 0.076 +49: Performance: 142.083 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96765,7 +96792,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96789,9 +96816,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.2 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 331.131 0.072 +49: Performance: 141.574 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: @@ -96814,7 +96841,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96838,9 +96865,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 271.722 0.088 +49: Performance: 126.223 0.190 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: @@ -96863,7 +96890,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96887,12 +96914,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.010 0.010 99.3 49: (ns/day) (hour/ns) -49: Performance: 297.545 0.081 +49: Performance: 144.847 0.166 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (54 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (100 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -96909,7 +96936,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96934,9 +96961,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 287.156 0.084 +49: Performance: 136.167 0.176 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96952,7 +96979,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -96977,9 +97004,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.7 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 262.895 0.091 +49: Performance: 133.237 0.180 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96997,7 +97024,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97022,9 +97049,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.8 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 258.364 0.093 +49: Performance: 138.022 0.174 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97042,7 +97069,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97067,9 +97094,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.010 0.010 99.8 49: (ns/day) (hour/ns) -49: Performance: 292.530 0.082 +49: Performance: 148.973 0.161 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: @@ -97087,7 +97114,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97112,9 +97139,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.7 +49: Time: 0.011 0.011 99.8 49: (ns/day) (hour/ns) -49: Performance: 328.492 0.073 +49: Performance: 138.161 0.174 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: @@ -97132,7 +97159,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97157,12 +97184,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.010 0.010 99.8 49: (ns/day) (hour/ns) -49: Performance: 317.159 0.076 +49: Performance: 141.744 0.169 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (55 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (99 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -97179,7 +97206,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97204,9 +97231,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 301.467 0.080 +49: Performance: 152.574 0.157 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97222,7 +97249,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97247,9 +97274,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 299.992 0.080 +49: Performance: 128.157 0.187 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97267,7 +97294,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97292,9 +97319,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.011 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 320.277 0.075 +49: Performance: 127.350 0.188 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97312,7 +97339,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97337,9 +97364,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 262.374 0.091 +49: Performance: 134.936 0.178 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: @@ -97357,7 +97384,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97382,9 +97409,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 283.541 0.085 +49: Performance: 143.360 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: @@ -97402,7 +97429,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97427,12 +97454,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 288.332 0.083 +49: Performance: 136.023 0.176 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (54 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (101 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -97449,7 +97476,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97474,9 +97501,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 280.993 0.085 +49: Performance: 136.978 0.175 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97492,7 +97519,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97517,9 +97544,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 98.9 +49: Time: 0.010 0.010 99.5 49: (ns/day) (hour/ns) -49: Performance: 301.899 0.079 +49: Performance: 144.970 0.166 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97537,7 +97564,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97562,9 +97589,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 272.123 0.088 +49: Performance: 120.958 0.198 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97582,7 +97609,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97607,9 +97634,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 234.112 0.103 +49: Performance: 129.294 0.186 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: @@ -97627,7 +97654,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97652,9 +97679,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 273.422 0.088 +49: Performance: 135.968 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: @@ -97672,7 +97699,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97697,12 +97724,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.4 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 284.143 0.084 +49: Performance: 129.514 0.185 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (57 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (102 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -97719,7 +97746,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97744,9 +97771,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 291.621 0.082 +49: Performance: 127.870 0.188 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97762,7 +97789,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97787,9 +97814,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 268.946 0.089 +49: Performance: 123.494 0.194 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97807,7 +97834,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97832,9 +97859,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 272.401 0.088 +49: Performance: 135.331 0.177 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97852,7 +97879,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97877,9 +97904,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.011 0.011 99.4 49: (ns/day) (hour/ns) -49: Performance: 249.106 0.096 +49: Performance: 129.797 0.185 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: @@ -97897,7 +97924,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97922,9 +97949,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 280.337 0.086 +49: Performance: 120.095 0.200 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: @@ -97942,7 +97969,7 @@ 49: Number of degrees of freedom in T-Coupling group System is 33.00 49: 49: There were 2 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -97967,13 +97994,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.3 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 276.243 0.087 +49: Performance: 128.366 0.187 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (57 ms) -49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (967 ms total) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (105 ms) +49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (1920 ms total) 49: 49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -98005,7 +98032,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98029,9 +98056,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.012 0.012 99.4 49: (ns/day) (hour/ns) -49: Performance: 377.309 0.064 +49: Performance: 124.223 0.193 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98060,7 +98087,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98084,9 +98111,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.154 0.154 100.0 +49: Time: 0.008 0.008 99.4 49: (ns/day) (hour/ns) -49: Performance: 9.533 2.517 +49: Performance: 175.075 0.137 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98117,7 +98144,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98141,9 +98168,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.051 0.051 99.9 +49: Time: 0.009 0.009 99.2 49: (ns/day) (hour/ns) -49: Performance: 28.549 0.841 +49: Performance: 165.019 0.145 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98174,7 +98201,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98198,9 +98225,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.019 0.019 99.8 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 78.071 0.307 +49: Performance: 143.424 0.167 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -98231,7 +98258,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98255,9 +98282,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.8 +49: Time: 0.007 0.007 98.9 49: (ns/day) (hour/ns) -49: Performance: 376.143 0.064 +49: Performance: 208.385 0.115 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -98288,7 +98315,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98312,12 +98339,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.015 0.015 99.6 49: (ns/day) (hour/ns) -49: Performance: 391.168 0.061 +49: Performance: 97.285 0.247 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (2761 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (4212 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -98347,7 +98374,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98371,9 +98398,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.2 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 294.256 0.082 +49: Performance: 185.557 0.129 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98402,7 +98429,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98426,9 +98453,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 364.181 0.066 +49: Performance: 188.202 0.128 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98459,7 +98486,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98483,9 +98510,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.011 0.011 99.6 +49: Time: 0.008 0.008 99.0 49: (ns/day) (hour/ns) -49: Performance: 137.780 0.174 +49: Performance: 184.302 0.130 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98516,7 +98543,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98540,9 +98567,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.6 +49: Time: 0.017 0.017 99.5 49: (ns/day) (hour/ns) -49: Performance: 143.179 0.168 +49: Performance: 86.920 0.276 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -98573,7 +98600,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98597,9 +98624,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.009 0.009 99.5 +49: Time: 0.008 0.008 99.3 49: (ns/day) (hour/ns) -49: Performance: 166.860 0.144 +49: Performance: 177.476 0.135 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -98630,7 +98657,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98654,12 +98681,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.5 +49: Time: 0.010 0.010 99.4 49: (ns/day) (hour/ns) -49: Performance: 405.358 0.059 +49: Performance: 147.502 0.163 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (2449 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (4118 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -98684,7 +98711,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98709,9 +98736,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.073 0.073 99.9 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 20.055 1.197 +49: Performance: 162.029 0.148 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98735,7 +98762,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98760,9 +98787,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.035 0.035 99.9 +49: Time: 0.029 0.029 99.8 49: (ns/day) (hour/ns) -49: Performance: 41.607 0.577 +49: Performance: 50.132 0.479 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98788,7 +98815,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98813,9 +98840,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.7 +49: Time: 0.008 0.008 99.3 49: (ns/day) (hour/ns) -49: Performance: 367.349 0.065 +49: Performance: 180.520 0.133 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98841,7 +98868,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98866,9 +98893,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.017 0.017 99.7 +49: Time: 0.012 0.012 99.5 49: (ns/day) (hour/ns) -49: Performance: 88.311 0.272 +49: Performance: 124.341 0.193 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -98894,7 +98921,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98919,9 +98946,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.6 +49: Time: 0.008 0.008 99.0 49: (ns/day) (hour/ns) -49: Performance: 344.847 0.070 +49: Performance: 179.032 0.134 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -98947,7 +98974,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -98972,12 +98999,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.032 0.032 99.9 +49: Time: 0.008 0.008 99.3 49: (ns/day) (hour/ns) -49: Performance: 46.318 0.518 +49: Performance: 173.436 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (2587 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (4136 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -99002,7 +99029,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99027,9 +99054,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.9 +49: Time: 0.044 0.044 99.8 49: (ns/day) (hour/ns) -49: Performance: 350.195 0.069 +49: Performance: 33.462 0.717 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99053,7 +99080,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99078,9 +99105,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.018 0.018 99.6 +49: Time: 0.010 0.011 99.3 49: (ns/day) (hour/ns) -49: Performance: 81.332 0.295 +49: Performance: 139.272 0.172 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99106,7 +99133,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99131,9 +99158,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.4 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 376.312 0.064 +49: Performance: 173.398 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99159,7 +99186,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99184,9 +99211,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.046 0.046 99.8 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 31.798 0.755 +49: Performance: 190.486 0.126 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -99212,7 +99239,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99237,9 +99264,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.7 +49: Time: 0.008 0.008 99.0 49: (ns/day) (hour/ns) -49: Performance: 392.622 0.061 +49: Performance: 176.893 0.136 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -99265,7 +99292,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99290,12 +99317,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.5 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 356.222 0.067 +49: Performance: 173.761 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (2532 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (4151 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -99320,7 +99347,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99345,9 +99372,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.008 0.008 99.0 49: (ns/day) (hour/ns) -49: Performance: 359.300 0.067 +49: Performance: 175.515 0.137 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99371,7 +99398,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99396,9 +99423,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 359.674 0.067 +49: Performance: 164.739 0.146 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99424,7 +99451,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99449,9 +99476,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 354.302 0.068 +49: Performance: 170.348 0.141 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99477,7 +99504,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99502,9 +99529,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.056 0.056 99.9 +49: Time: 0.008 0.008 99.1 49: (ns/day) (hour/ns) -49: Performance: 26.184 0.917 +49: Performance: 177.235 0.135 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -99530,7 +99557,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99555,9 +99582,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.009 0.009 99.1 49: (ns/day) (hour/ns) -49: Performance: 338.820 0.071 +49: Performance: 156.961 0.153 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -99583,7 +99610,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99608,12 +99635,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.005 99.1 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 323.470 0.074 +49: Performance: 170.416 0.141 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (2482 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (4069 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -99638,7 +99665,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99663,9 +99690,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.014 0.014 99.7 +49: Time: 0.042 0.042 99.8 49: (ns/day) (hour/ns) -49: Performance: 105.303 0.228 +49: Performance: 34.974 0.686 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99689,7 +99716,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99714,9 +99741,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.029 0.029 99.8 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 49.823 0.482 +49: Performance: 158.659 0.151 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99742,7 +99769,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99767,9 +99794,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.019 0.019 99.7 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 75.546 0.318 +49: Performance: 163.515 0.147 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99795,7 +99822,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99820,9 +99847,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.045 0.045 99.7 +49: Time: 0.008 0.008 99.2 49: (ns/day) (hour/ns) -49: Performance: 32.458 0.739 +49: Performance: 173.513 0.138 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -99848,7 +99875,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99873,9 +99900,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.010 0.010 99.3 49: (ns/day) (hour/ns) -49: Performance: 339.910 0.071 +49: Performance: 152.573 0.157 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -99901,7 +99928,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99926,12 +99953,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.0 +49: Time: 0.009 0.009 99.3 49: (ns/day) (hour/ns) -49: Performance: 331.979 0.072 +49: Performance: 167.109 0.144 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2535 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (4117 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -99961,7 +99988,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -99985,9 +100012,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.047 0.047 100.0 +49: Time: 0.010 0.010 99.7 49: (ns/day) (hour/ns) -49: Performance: 31.098 0.772 +49: Performance: 149.615 0.160 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100016,7 +100043,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100040,9 +100067,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.008 0.008 99.4 49: (ns/day) (hour/ns) -49: Performance: 342.066 0.070 +49: Performance: 175.881 0.136 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100073,7 +100100,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100097,9 +100124,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.7 +49: Time: 0.021 0.021 99.8 49: (ns/day) (hour/ns) -49: Performance: 268.647 0.089 +49: Performance: 68.696 0.349 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100130,7 +100157,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100154,9 +100181,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.023 0.023 99.9 +49: Time: 0.008 0.008 99.7 49: (ns/day) (hour/ns) -49: Performance: 63.080 0.380 +49: Performance: 175.243 0.137 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -100187,7 +100214,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100211,9 +100238,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.009 0.009 99.7 49: (ns/day) (hour/ns) -49: Performance: 314.737 0.076 +49: Performance: 169.412 0.142 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -100244,7 +100271,7 @@ 49: 49: 49: There were 4 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100268,12 +100295,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.041 0.041 100.0 +49: Time: 0.008 0.008 99.7 49: (ns/day) (hour/ns) -49: Performance: 36.223 0.663 +49: Performance: 175.527 0.137 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (2530 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (4156 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -100298,7 +100325,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100323,9 +100350,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.025 0.025 99.9 +49: Time: 0.009 0.009 99.7 49: (ns/day) (hour/ns) -49: Performance: 57.986 0.414 +49: Performance: 168.710 0.142 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100349,7 +100376,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100374,9 +100401,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.6 +49: Time: 0.008 0.008 99.7 49: (ns/day) (hour/ns) -49: Performance: 333.560 0.072 +49: Performance: 175.589 0.137 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100402,7 +100429,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100427,9 +100454,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 99.6 +49: Time: 0.008 0.008 99.4 49: (ns/day) (hour/ns) -49: Performance: 316.060 0.076 +49: Performance: 176.113 0.136 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100455,7 +100482,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100480,9 +100507,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 99.5 +49: Time: 0.017 0.017 99.8 49: (ns/day) (hour/ns) -49: Performance: 360.908 0.066 +49: Performance: 85.011 0.282 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -100508,7 +100535,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100533,9 +100560,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.032 0.032 99.9 +49: Time: 0.012 0.012 99.6 49: (ns/day) (hour/ns) -49: Performance: 45.681 0.525 +49: Performance: 125.064 0.192 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -100561,7 +100588,7 @@ 49: 49: 49: There were 3 notes -49: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +49: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 49: The current CPU can measure timings more accurately than the code in 49: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 49: speed as accurate timings are needed for load-balancing. @@ -100586,18 +100613,18 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.039 0.039 99.9 +49: Time: 0.008 0.008 99.7 49: (ns/day) (hour/ns) -49: Performance: 37.847 0.634 +49: Performance: 194.454 0.123 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (2509 ms) -49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (20386 ms total) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (4083 ms) +49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (33042 ms total) 49: 49: [----------] Global test environment tear-down -49: [==========] 27 tests from 3 test cases ran. (21469 ms total) +49: [==========] 27 tests from 3 test cases ran. (35081 ms total) 49: [ PASSED ] 27 tests. -49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 21.48 sec +49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 35.10 sec test 50 Start 50: MdrunMpiCoordinationTestsTwoRanks @@ -100627,7 +100654,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -100656,18 +100683,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.6%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.3%. +50: Average load imbalance: 2.1%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.4 +50: Time: 0.024 0.012 198.7 50: (ns/day) (hour/ns) -50: Performance: 250.697 0.096 +50: Performance: 122.442 0.196 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100688,7 +100715,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -100717,18 +100744,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.4%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.2%. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 44%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.4 +50: Time: 0.043 0.022 199.2 50: (ns/day) (hour/ns) -50: Performance: 251.781 0.095 +50: Performance: 68.089 0.352 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100751,7 +100778,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -100779,19 +100806,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.0%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.0%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.3 +50: Time: 0.026 0.013 198.7 50: (ns/day) (hour/ns) -50: Performance: 263.726 0.091 +50: Performance: 114.371 0.210 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100814,7 +100842,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -100842,19 +100870,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.1%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.043 0.022 199.3 50: (ns/day) (hour/ns) -50: Performance: 299.161 0.080 +50: Performance: 68.058 0.353 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -100877,7 +100906,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -100906,18 +100935,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.022 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 290.463 0.083 +50: Performance: 131.376 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -100940,7 +100969,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -100969,22 +100998,22 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 3.1%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.022 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 297.396 0.081 +50: Performance: 133.437 0.180 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (88 ms) -50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (88 ms total) +50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (150 ms) +50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (150 ms total) 50: 50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -101008,7 +101037,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101037,18 +101066,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.023 0.012 198.2 50: (ns/day) (hour/ns) -50: Performance: 290.823 0.083 +50: Performance: 124.734 0.192 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101069,7 +101098,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101098,18 +101127,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 3.8%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.9%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.024 0.012 198.7 50: (ns/day) (hour/ns) -50: Performance: 296.073 0.081 +50: Performance: 120.731 0.199 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101132,7 +101161,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101161,18 +101190,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 2.9%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.026 0.013 198.9 50: (ns/day) (hour/ns) -50: Performance: 305.469 0.079 +50: Performance: 111.938 0.214 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101195,7 +101224,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101224,18 +101253,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 3.4%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.8%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 49 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.7 +50: Time: 0.088 0.044 199.6 50: (ns/day) (hour/ns) -50: Performance: 293.521 0.082 +50: Performance: 33.223 0.722 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -101258,7 +101287,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101286,20 +101315,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 5.8%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.2%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.024 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 290.910 0.082 +50: Performance: 120.713 0.199 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -101322,7 +101350,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101351,21 +101379,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.2%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.034 0.017 199.1 50: (ns/day) (hour/ns) -50: Performance: 284.366 0.084 +50: Performance: 85.674 0.280 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (57 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (157 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -101387,7 +101415,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101416,18 +101444,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 1.5%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.045 0.023 199.2 50: (ns/day) (hour/ns) -50: Performance: 272.106 0.088 +50: Performance: 64.492 0.372 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101448,7 +101476,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101477,18 +101505,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.026 0.013 198.6 50: (ns/day) (hour/ns) -50: Performance: 280.408 0.086 +50: Performance: 113.747 0.211 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101511,7 +101539,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101540,18 +101568,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 3.2%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.020 0.010 198.0 50: (ns/day) (hour/ns) -50: Performance: 278.222 0.086 +50: Performance: 146.491 0.164 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101574,7 +101602,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101603,18 +101631,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.5 +50: Time: 0.026 0.013 198.3 50: (ns/day) (hour/ns) -50: Performance: 283.025 0.085 +50: Performance: 112.990 0.212 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -101637,7 +101665,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101666,18 +101694,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.8 +50: Time: 0.021 0.010 197.9 50: (ns/day) (hour/ns) -50: Performance: 248.946 0.096 +50: Performance: 141.112 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -101700,7 +101728,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101729,21 +101757,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 3.4%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.8%. 50: 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 190.7 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 290.944 0.082 +50: Performance: 138.613 0.173 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (60 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (125 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -101765,7 +101793,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101793,19 +101821,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.7%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.3%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.022 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 267.298 0.090 +50: Performance: 133.437 0.180 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101826,7 +101855,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101855,18 +101884,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.2 +50: Time: 0.021 0.011 197.9 50: (ns/day) (hour/ns) -50: Performance: 297.578 0.081 +50: Performance: 139.241 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101889,7 +101918,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101918,18 +101947,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 3.4%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.022 0.011 198.3 50: (ns/day) (hour/ns) -50: Performance: 305.310 0.079 +50: Performance: 133.606 0.180 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101952,7 +101981,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -101981,18 +102010,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.3 +50: Time: 0.024 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 295.821 0.081 +50: Performance: 122.328 0.196 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -102015,7 +102044,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102044,18 +102073,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.4 +50: Time: 0.022 0.011 198.2 50: (ns/day) (hour/ns) -50: Performance: 297.850 0.081 +50: Performance: 130.875 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -102078,7 +102107,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102106,22 +102135,23 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.1%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 9.3%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 5.0%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 197.6 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 273.307 0.088 +50: Performance: 136.058 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (59 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (110 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -102138,7 +102168,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102165,13 +102195,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.3 +50: Time: 0.023 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 285.315 0.084 +50: Performance: 128.927 0.186 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -102187,7 +102217,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102214,13 +102244,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 195.7 +50: Time: 0.020 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 268.208 0.089 +50: Performance: 145.517 0.165 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102238,7 +102268,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102265,13 +102295,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.2 +50: Time: 0.023 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 292.246 0.082 +50: Performance: 128.939 0.186 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102289,7 +102319,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102316,13 +102346,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.4 +50: Time: 0.020 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 277.945 0.086 +50: Performance: 143.251 0.168 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -102340,7 +102370,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102367,13 +102397,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.019 0.009 198.5 50: (ns/day) (hour/ns) -50: Performance: 304.522 0.079 +50: Performance: 155.389 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -102391,7 +102421,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102418,16 +102448,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.021 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 303.297 0.079 +50: Performance: 140.554 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (58 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (106 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -102444,7 +102474,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102471,13 +102501,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 295.066 0.081 +50: Performance: 135.757 0.177 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -102493,7 +102523,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102520,13 +102550,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 298.740 0.080 +50: Performance: 134.614 0.178 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102544,7 +102574,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102571,13 +102601,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.7 +50: Time: 0.027 0.014 198.5 50: (ns/day) (hour/ns) -50: Performance: 280.615 0.086 +50: Performance: 106.698 0.225 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102595,7 +102625,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102622,13 +102652,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 273.668 0.088 +50: Performance: 130.355 0.184 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -102646,7 +102676,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102673,13 +102703,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 274.702 0.087 +50: Performance: 137.343 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -102697,7 +102727,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102724,16 +102754,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.020 0.010 197.7 50: (ns/day) (hour/ns) -50: Performance: 284.018 0.085 +50: Performance: 146.112 0.164 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (59 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (111 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -102750,7 +102780,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102777,13 +102807,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.020 0.010 198.1 50: (ns/day) (hour/ns) -50: Performance: 268.555 0.089 +50: Performance: 143.000 0.168 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -102799,7 +102829,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102826,13 +102856,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.020 0.010 198.3 50: (ns/day) (hour/ns) -50: Performance: 303.293 0.079 +50: Performance: 146.856 0.163 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102850,7 +102880,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102877,13 +102907,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.0 +50: Time: 0.021 0.011 197.9 50: (ns/day) (hour/ns) -50: Performance: 283.930 0.085 +50: Performance: 137.009 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102901,7 +102931,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102928,13 +102958,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 196.1 +50: Time: 0.022 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 256.505 0.094 +50: Performance: 134.122 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -102952,7 +102982,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -102979,13 +103009,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 195.8 +50: Time: 0.020 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 276.716 0.087 +50: Performance: 142.377 0.169 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -103003,7 +103033,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103030,16 +103060,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.023 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 291.743 0.082 +50: Performance: 129.189 0.186 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (63 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (106 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -103060,7 +103090,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103087,13 +103117,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 198.0 +50: Time: 0.039 0.019 199.1 50: (ns/day) (hour/ns) -50: Performance: 307.799 0.078 +50: Performance: 75.881 0.316 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -103113,7 +103143,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103140,13 +103170,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 198.0 +50: Time: 0.022 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 310.715 0.077 +50: Performance: 133.169 0.180 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103168,7 +103198,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103195,13 +103225,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.022 0.011 198.3 50: (ns/day) (hour/ns) -50: Performance: 292.148 0.082 +50: Performance: 134.170 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103223,7 +103253,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103250,13 +103280,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.5 +50: Time: 0.022 0.011 197.9 50: (ns/day) (hour/ns) -50: Performance: 309.102 0.078 +50: Performance: 131.898 0.182 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -103278,7 +103308,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103305,13 +103335,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.6 +50: Time: 0.020 0.010 198.1 50: (ns/day) (hour/ns) -50: Performance: 305.849 0.078 +50: Performance: 143.826 0.167 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -103333,7 +103363,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103360,16 +103390,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.020 0.010 198.4 50: (ns/day) (hour/ns) -50: Performance: 287.197 0.084 +50: Performance: 146.226 0.164 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (57 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (117 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -103397,7 +103427,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103424,13 +103454,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.6 +50: Time: 0.021 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 280.739 0.085 +50: Performance: 142.087 0.169 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -103457,7 +103487,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103484,13 +103514,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.3 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 248.591 0.097 +50: Performance: 138.056 0.174 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103519,7 +103549,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103546,13 +103576,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.9 +50: Time: 0.019 0.010 198.0 50: (ns/day) (hour/ns) -50: Performance: 266.238 0.090 +50: Performance: 152.006 0.158 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103581,7 +103611,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103608,13 +103638,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.021 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 292.316 0.082 +50: Performance: 136.753 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -103643,7 +103673,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103670,13 +103700,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.6 +50: Time: 0.021 0.010 198.1 50: (ns/day) (hour/ns) -50: Performance: 282.713 0.085 +50: Performance: 141.259 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -103705,7 +103735,7 @@ 50: There were 3 notes 50: 50: There was 1 warning -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103732,16 +103762,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.025 0.012 198.4 50: (ns/day) (hour/ns) -50: Performance: 274.130 0.088 +50: Performance: 118.186 0.203 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (61 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (108 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -103762,7 +103792,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103789,13 +103819,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.5 +50: Time: 0.022 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 290.562 0.083 +50: Performance: 132.217 0.182 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -103815,7 +103845,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103842,13 +103872,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.6 +50: Time: 0.026 0.013 198.7 50: (ns/day) (hour/ns) -50: Performance: 282.425 0.085 +50: Performance: 114.352 0.210 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103870,7 +103900,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103897,13 +103927,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 45 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.3 +50: Time: 0.021 0.010 197.9 50: (ns/day) (hour/ns) -50: Performance: 240.452 0.100 +50: Performance: 141.478 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103925,7 +103955,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -103952,13 +103982,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.5 +50: Time: 0.022 0.011 198.1 50: (ns/day) (hour/ns) -50: Performance: 289.924 0.083 +50: Performance: 129.848 0.185 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: @@ -103980,7 +104010,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104007,13 +104037,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.024 0.012 198.3 50: (ns/day) (hour/ns) -50: Performance: 294.863 0.081 +50: Performance: 123.374 0.195 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: @@ -104035,7 +104065,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104062,16 +104092,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.1 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 289.694 0.083 +50: Performance: 137.390 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (60 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (113 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -104088,7 +104118,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104115,13 +104145,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.3 +50: Time: 0.022 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 292.471 0.082 +50: Performance: 134.687 0.178 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -104137,7 +104167,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104164,13 +104194,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 198.1 +50: Time: 0.022 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 312.761 0.077 +50: Performance: 130.163 0.184 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104188,7 +104218,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104215,13 +104245,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.2 +50: Time: 0.021 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 302.458 0.079 +50: Performance: 141.160 0.170 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104239,7 +104269,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104266,13 +104296,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.3 +50: Time: 0.022 0.011 198.3 50: (ns/day) (hour/ns) -50: Performance: 285.709 0.084 +50: Performance: 134.310 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: @@ -104290,7 +104320,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104317,13 +104347,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.4 +50: Time: 0.022 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 278.970 0.086 +50: Performance: 135.588 0.177 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: @@ -104341,7 +104371,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104368,16 +104398,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.021 0.010 198.3 50: (ns/day) (hour/ns) -50: Performance: 286.886 0.084 +50: Performance: 140.255 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (58 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (109 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -104394,7 +104424,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104421,13 +104451,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.6 +50: Time: 0.022 0.011 198.7 50: (ns/day) (hour/ns) -50: Performance: 279.508 0.086 +50: Performance: 135.553 0.177 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -104443,7 +104473,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104470,13 +104500,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.021 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 308.518 0.078 +50: Performance: 139.671 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104494,7 +104524,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104521,13 +104551,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.021 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 277.028 0.087 +50: Performance: 136.927 0.175 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104545,7 +104575,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104572,13 +104602,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 198.0 +50: Time: 0.020 0.010 197.7 50: (ns/day) (hour/ns) -50: Performance: 306.243 0.078 +50: Performance: 143.994 0.167 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: @@ -104596,7 +104626,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104623,13 +104653,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.023 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 290.209 0.083 +50: Performance: 125.000 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: @@ -104647,7 +104677,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104674,16 +104704,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.9 +50: Time: 0.022 0.011 198.2 50: (ns/day) (hour/ns) -50: Performance: 313.874 0.076 +50: Performance: 130.598 0.184 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (58 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (108 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -104700,7 +104730,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104727,13 +104757,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.021 0.011 198.2 50: (ns/day) (hour/ns) -50: Performance: 289.808 0.083 +50: Performance: 137.908 0.174 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -104749,7 +104779,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104776,13 +104806,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.4 +50: Time: 0.020 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 298.643 0.080 +50: Performance: 143.981 0.167 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104800,7 +104830,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104827,13 +104857,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.020 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 291.224 0.082 +50: Performance: 144.807 0.166 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104851,7 +104881,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104878,13 +104908,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.7 +50: Time: 0.023 0.012 198.7 50: (ns/day) (hour/ns) -50: Performance: 282.140 0.085 +50: Performance: 125.832 0.191 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: @@ -104902,7 +104932,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104929,13 +104959,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.2 +50: Time: 0.021 0.011 198.6 50: (ns/day) (hour/ns) -50: Performance: 269.211 0.089 +50: Performance: 136.365 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: @@ -104953,7 +104983,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -104980,16 +105010,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.021 0.010 198.5 50: (ns/day) (hour/ns) -50: Performance: 283.918 0.085 +50: Performance: 140.337 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (59 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (109 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -105011,7 +105041,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105040,15 +105070,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.3%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.2%. +50: Average load imbalance: 1.5%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.0 +50: Time: 0.022 0.011 197.1 50: (ns/day) (hour/ns) -50: Performance: 243.795 0.098 +50: Performance: 130.461 0.184 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -105069,7 +105099,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105098,15 +105128,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 64%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 3.2%. +50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.6 +50: Time: 0.023 0.012 197.4 50: (ns/day) (hour/ns) -50: Performance: 268.406 0.089 +50: Performance: 126.352 0.190 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105129,7 +105159,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105157,17 +105187,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 4.0%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.6%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 61%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.5 +50: Time: 0.022 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 286.103 0.084 +50: Performance: 134.074 0.179 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105190,7 +105219,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105219,15 +105248,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.7%. -50: The balanceable part of the MD step is 64%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 2.7%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.3 +50: Time: 0.024 0.012 197.9 50: (ns/day) (hour/ns) -50: Performance: 289.438 0.083 +50: Performance: 120.603 0.199 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: @@ -105250,7 +105279,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105279,15 +105308,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.0%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.7%. +50: The balanceable part of the MD step is 62%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.7 +50: Time: 0.025 0.012 197.8 50: (ns/day) (hour/ns) -50: Performance: 273.309 0.088 +50: Performance: 117.686 0.204 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: @@ -105310,7 +105339,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105339,18 +105368,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.1%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.8 +50: Time: 0.028 0.014 198.1 50: (ns/day) (hour/ns) -50: Performance: 274.241 0.088 +50: Performance: 104.646 0.229 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (60 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (114 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -105372,7 +105401,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105401,18 +105430,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.5%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.3%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 197.9 +50: Time: 0.025 0.013 198.4 50: (ns/day) (hour/ns) -50: Performance: 274.936 0.087 +50: Performance: 114.325 0.210 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -105433,7 +105462,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105462,18 +105491,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 60%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.4%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.020 0.010 197.9 50: (ns/day) (hour/ns) -50: Performance: 277.640 0.086 +50: Performance: 143.471 0.167 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105496,7 +105525,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105525,18 +105554,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.0%. -50: The balanceable part of the MD step is 60%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 1.3%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.021 0.011 198.3 50: (ns/day) (hour/ns) -50: Performance: 284.741 0.084 +50: Performance: 137.827 0.174 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105559,7 +105588,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105588,18 +105617,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.9%. -50: The balanceable part of the MD step is 60%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 2.7%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.020 0.010 198.3 50: (ns/day) (hour/ns) -50: Performance: 288.237 0.083 +50: Performance: 143.776 0.167 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: @@ -105622,7 +105651,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105651,18 +105680,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.0%. -50: The balanceable part of the MD step is 60%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 2.2%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.028 0.014 198.8 50: (ns/day) (hour/ns) -50: Performance: 278.456 0.086 +50: Performance: 102.600 0.234 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: @@ -105685,7 +105714,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105715,20 +105744,20 @@ 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. 50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.020 0.010 198.3 50: (ns/day) (hour/ns) -50: Performance: 286.778 0.084 +50: Performance: 142.831 0.168 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (59 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (111 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -105745,7 +105774,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105773,9 +105802,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.6 +50: Time: 0.022 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 286.242 0.084 +50: Performance: 133.322 0.180 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -105791,7 +105820,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105819,9 +105848,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.8 +50: Time: 0.023 0.012 197.7 50: (ns/day) (hour/ns) -50: Performance: 273.169 0.088 +50: Performance: 124.245 0.193 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105839,7 +105868,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105867,9 +105896,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.8 +50: Time: 0.030 0.015 198.3 50: (ns/day) (hour/ns) -50: Performance: 274.845 0.087 +50: Performance: 98.029 0.245 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105887,7 +105916,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105915,9 +105944,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.7 +50: Time: 0.021 0.011 197.3 50: (ns/day) (hour/ns) -50: Performance: 288.565 0.083 +50: Performance: 136.365 0.176 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: @@ -105935,7 +105964,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -105963,9 +105992,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.7 +50: Time: 0.025 0.013 196.8 50: (ns/day) (hour/ns) -50: Performance: 288.235 0.083 +50: Performance: 115.531 0.208 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: @@ -105983,7 +106012,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106011,12 +106040,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 196.9 +50: Time: 0.026 0.013 197.6 50: (ns/day) (hour/ns) -50: Performance: 271.855 0.088 +50: Performance: 110.274 0.218 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (59 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (119 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -106033,7 +106062,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106060,13 +106089,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 44 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.1 +50: Time: 0.029 0.014 198.5 50: (ns/day) (hour/ns) -50: Performance: 281.072 0.085 +50: Performance: 101.648 0.236 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -106082,7 +106111,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106109,13 +106138,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.024 0.012 197.7 50: (ns/day) (hour/ns) -50: Performance: 300.451 0.080 +50: Performance: 120.559 0.199 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106133,7 +106162,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106160,13 +106189,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.031 0.016 198.7 50: (ns/day) (hour/ns) -50: Performance: 281.724 0.085 +50: Performance: 93.308 0.257 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106184,7 +106213,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106211,13 +106240,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 47 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.8 +50: Time: 0.027 0.013 198.5 50: (ns/day) (hour/ns) -50: Performance: 285.020 0.084 +50: Performance: 109.158 0.220 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: @@ -106235,7 +106264,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106262,13 +106291,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.035 0.017 198.8 50: (ns/day) (hour/ns) -50: Performance: 294.898 0.081 +50: Performance: 84.341 0.285 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: @@ -106286,7 +106315,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106313,16 +106342,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 198.0 +50: Time: 0.023 0.012 198.1 50: (ns/day) (hour/ns) -50: Performance: 287.785 0.083 +50: Performance: 127.717 0.188 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (60 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (137 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -106339,7 +106368,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106366,13 +106395,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.7 +50: Time: 0.026 0.013 198.4 50: (ns/day) (hour/ns) -50: Performance: 257.479 0.093 +50: Performance: 112.946 0.212 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -106388,7 +106417,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106415,13 +106444,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.023 0.012 198.1 50: (ns/day) (hour/ns) -50: Performance: 273.675 0.088 +50: Performance: 124.825 0.192 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106439,7 +106468,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106466,13 +106495,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.005 198.1 +50: Time: 0.025 0.012 198.3 50: (ns/day) (hour/ns) -50: Performance: 272.306 0.088 +50: Performance: 117.927 0.204 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106490,7 +106519,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106517,13 +106546,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.8 +50: Time: 0.033 0.016 198.9 50: (ns/day) (hour/ns) -50: Performance: 266.182 0.090 +50: Performance: 89.455 0.268 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: @@ -106541,7 +106570,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106568,13 +106597,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 46 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.8 +50: Time: 0.025 0.013 198.7 50: (ns/day) (hour/ns) -50: Performance: 264.920 0.091 +50: Performance: 117.193 0.205 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: @@ -106592,7 +106621,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106619,16 +106648,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.9 +50: Time: 0.023 0.012 198.7 50: (ns/day) (hour/ns) -50: Performance: 256.174 0.094 +50: Performance: 126.859 0.189 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (61 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (125 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -106645,7 +106674,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106672,13 +106701,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.0 +50: Time: 0.023 0.012 198.5 50: (ns/day) (hour/ns) -50: Performance: 238.917 0.100 +50: Performance: 124.830 0.192 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -106694,7 +106723,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106721,13 +106750,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 197.7 +50: Time: 0.024 0.012 198.2 50: (ns/day) (hour/ns) -50: Performance: 248.292 0.097 +50: Performance: 120.315 0.199 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106745,7 +106774,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106772,13 +106801,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 38 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.1 +50: Time: 0.024 0.012 198.1 50: (ns/day) (hour/ns) -50: Performance: 250.396 0.096 +50: Performance: 122.859 0.195 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106796,7 +106825,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106823,13 +106852,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 38 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.0 +50: Time: 0.023 0.011 198.4 50: (ns/day) (hour/ns) -50: Performance: 257.598 0.093 +50: Performance: 128.368 0.187 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: @@ -106847,7 +106876,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106874,13 +106903,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 38 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 197.8 +50: Time: 0.026 0.013 198.3 50: (ns/day) (hour/ns) -50: Performance: 259.036 0.093 +50: Performance: 110.264 0.218 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: @@ -106898,7 +106927,7 @@ 50: Number of degrees of freedom in T-Coupling group System is 33.00 50: 50: There were 2 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106925,17 +106954,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.012 0.006 198.0 +50: Time: 0.024 0.012 198.6 50: (ns/day) (hour/ns) -50: Performance: 240.941 0.100 +50: Performance: 122.747 0.196 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (64 ms) -50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (1072 ms total) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (117 ms) +50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (2103 ms total) 50: 50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -106967,7 +106996,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -106996,18 +107025,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 2.7%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.8 +50: Time: 0.038 0.019 199.1 50: (ns/day) (hour/ns) -50: Performance: 303.167 0.079 +50: Performance: 77.838 0.308 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -107036,7 +107065,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107065,18 +107094,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 1.0%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 197.2 +50: Time: 0.019 0.010 197.9 50: (ns/day) (hour/ns) -50: Performance: 336.856 0.071 +50: Performance: 149.398 0.161 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107107,7 +107136,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107136,18 +107165,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.8%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.6%. +50: Average load imbalance: 1.3%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.5 +50: Time: 0.017 0.008 197.0 50: (ns/day) (hour/ns) -50: Performance: 343.289 0.070 +50: Performance: 174.003 0.138 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107178,7 +107207,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107207,18 +107236,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.5%. +50: Average load imbalance: 0.3%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.2%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.5 +50: Time: 0.018 0.009 197.8 50: (ns/day) (hour/ns) -50: Performance: 354.717 0.068 +50: Performance: 159.273 0.151 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -107249,7 +107278,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107278,18 +107307,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 0.9%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.7 +50: Time: 0.018 0.009 197.4 50: (ns/day) (hour/ns) -50: Performance: 320.558 0.075 +50: Performance: 159.649 0.150 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -107320,7 +107349,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107348,22 +107377,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 4.4%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.5 +50: Time: 0.018 0.009 197.7 50: (ns/day) (hour/ns) -50: Performance: 349.880 0.069 +50: Performance: 158.474 0.151 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (2468 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (4598 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -107393,7 +107422,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107421,19 +107450,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.8%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.6%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 4.9%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. 50: 50: -50: NOTE: 42 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.3 +50: Time: 0.020 0.010 198.3 50: (ns/day) (hour/ns) -50: Performance: 300.517 0.080 +50: Performance: 147.573 0.163 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -107462,7 +107491,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107490,19 +107519,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.7%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.7%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 0.8%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.6 +50: Time: 0.020 0.010 197.6 50: (ns/day) (hour/ns) -50: Performance: 308.514 0.078 +50: Performance: 142.010 0.169 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107533,7 +107562,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107561,19 +107590,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 5.5%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.9%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 196.4 +50: Time: 0.019 0.009 198.2 50: (ns/day) (hour/ns) -50: Performance: 327.373 0.073 +50: Performance: 155.443 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107604,7 +107633,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107633,18 +107662,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 43 % of the run time was spent communicating energies, +50: NOTE: 48 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 197.9 +50: Time: 0.049 0.025 198.8 50: (ns/day) (hour/ns) -50: Performance: 280.139 0.086 +50: Performance: 59.608 0.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -107675,7 +107704,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107704,18 +107733,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.5%. +50: Average load imbalance: 0.9%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 46 % of the run time was spent communicating energies, +50: NOTE: 44 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.018 0.009 198.7 +50: Time: 0.019 0.010 197.1 50: (ns/day) (hour/ns) -50: Performance: 165.538 0.145 +50: Performance: 154.491 0.155 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -107746,7 +107775,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107774,22 +107803,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 5.1%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. 50: 50: -50: NOTE: 41 % of the run time was spent communicating energies, +50: NOTE: 45 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 197.4 +50: Time: 0.020 0.010 198.6 50: (ns/day) (hour/ns) -50: Performance: 329.420 0.073 +50: Performance: 144.812 0.166 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (2418 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (4691 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -107814,7 +107843,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107842,9 +107871,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.135 0.067 199.8 +50: Time: 0.019 0.010 198.0 50: (ns/day) (hour/ns) -50: Performance: 21.783 1.102 +50: Performance: 154.118 0.156 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -107868,7 +107897,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107896,9 +107925,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 196.5 +50: Time: 0.017 0.009 197.5 50: (ns/day) (hour/ns) -50: Performance: 343.681 0.070 +50: Performance: 171.532 0.140 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107924,7 +107953,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -107952,9 +107981,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.137 0.068 199.8 +50: Time: 0.018 0.009 196.8 50: (ns/day) (hour/ns) -50: Performance: 21.458 1.118 +50: Performance: 163.697 0.147 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107980,7 +108009,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108008,9 +108037,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.016 0.008 198.5 +50: Time: 0.019 0.009 198.3 50: (ns/day) (hour/ns) -50: Performance: 186.386 0.129 +50: Performance: 155.859 0.154 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -108036,7 +108065,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108064,9 +108093,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.036 0.018 199.4 +50: Time: 0.021 0.011 198.5 50: (ns/day) (hour/ns) -50: Performance: 82.080 0.292 +50: Performance: 139.029 0.173 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -108092,7 +108121,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108120,12 +108149,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.097 0.048 199.7 +50: Time: 0.021 0.011 197.2 50: (ns/day) (hour/ns) -50: Performance: 30.290 0.792 +50: Performance: 139.625 0.172 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (2571 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (4693 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -108150,7 +108179,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108178,9 +108207,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.015 0.007 198.1 +50: Time: 0.082 0.041 198.9 50: (ns/day) (hour/ns) -50: Performance: 196.690 0.122 +50: Performance: 35.583 0.674 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -108204,7 +108233,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108232,9 +108261,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.126 0.063 199.8 +50: Time: 0.017 0.009 197.2 50: (ns/day) (hour/ns) -50: Performance: 23.344 1.028 +50: Performance: 166.129 0.144 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108260,7 +108289,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108288,9 +108317,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 196.7 +50: Time: 0.023 0.012 197.7 50: (ns/day) (hour/ns) -50: Performance: 336.740 0.071 +50: Performance: 124.658 0.193 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108316,7 +108345,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108344,9 +108373,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.030 0.015 198.9 +50: Time: 0.020 0.010 198.2 50: (ns/day) (hour/ns) -50: Performance: 98.201 0.244 +50: Performance: 146.072 0.164 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -108372,7 +108401,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108400,9 +108429,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.060 0.030 199.5 +50: Time: 0.018 0.009 197.0 50: (ns/day) (hour/ns) -50: Performance: 48.536 0.494 +50: Performance: 163.908 0.146 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -108428,7 +108457,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108456,12 +108485,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.027 0.014 199.1 +50: Time: 0.020 0.010 197.5 50: (ns/day) (hour/ns) -50: Performance: 108.794 0.221 +50: Performance: 145.584 0.165 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (2509 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (4754 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -108486,7 +108515,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108514,9 +108543,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.1 +50: Time: 0.019 0.010 198.0 50: (ns/day) (hour/ns) -50: Performance: 265.379 0.090 +50: Performance: 152.922 0.157 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -108540,7 +108569,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108568,9 +108597,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 196.7 +50: Time: 0.018 0.009 198.1 50: (ns/day) (hour/ns) -50: Performance: 366.633 0.065 +50: Performance: 162.784 0.147 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108596,7 +108625,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108624,9 +108653,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.123 0.062 199.8 +50: Time: 0.020 0.010 197.6 50: (ns/day) (hour/ns) -50: Performance: 23.860 1.006 +50: Performance: 147.218 0.163 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108652,7 +108681,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108680,9 +108709,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.049 0.025 199.4 +50: Time: 0.019 0.010 197.8 50: (ns/day) (hour/ns) -50: Performance: 59.349 0.404 +50: Performance: 152.617 0.157 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -108708,7 +108737,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108736,9 +108765,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 197.4 +50: Time: 0.021 0.010 198.2 50: (ns/day) (hour/ns) -50: Performance: 349.464 0.069 +50: Performance: 140.702 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -108764,7 +108793,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108792,12 +108821,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.056 0.028 199.6 +50: Time: 0.021 0.010 197.3 50: (ns/day) (hour/ns) -50: Performance: 52.067 0.461 +50: Performance: 140.748 0.171 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (2510 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (4722 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -108822,7 +108851,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108850,9 +108879,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.061 0.030 199.5 +50: Time: 0.023 0.012 197.8 50: (ns/day) (hour/ns) -50: Performance: 48.402 0.496 +50: Performance: 125.804 0.191 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -108876,7 +108905,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108904,9 +108933,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.011 0.006 198.1 +50: Time: 0.018 0.009 198.0 50: (ns/day) (hour/ns) -50: Performance: 256.042 0.094 +50: Performance: 157.708 0.152 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108932,7 +108961,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -108960,9 +108989,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.100 0.050 199.8 +50: Time: 0.020 0.010 197.8 50: (ns/day) (hour/ns) -50: Performance: 29.457 0.815 +50: Performance: 146.663 0.164 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108988,7 +109017,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109016,9 +109045,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.014 0.007 198.1 +50: Time: 0.018 0.009 197.5 50: (ns/day) (hour/ns) -50: Performance: 204.493 0.117 +50: Performance: 161.157 0.149 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -109044,7 +109073,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109072,9 +109101,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.106 0.053 199.7 +50: Time: 0.018 0.009 198.2 50: (ns/day) (hour/ns) -50: Performance: 27.673 0.867 +50: Performance: 157.939 0.152 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -109100,7 +109129,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109128,12 +109157,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 197.6 +50: Time: 0.019 0.010 197.2 50: (ns/day) (hour/ns) -50: Performance: 308.067 0.078 +50: Performance: 154.307 0.156 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2521 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (4602 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -109163,7 +109192,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109192,15 +109221,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.2%. -50: The balanceable part of the MD step is 64%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 0.2%. +50: The balanceable part of the MD step is 61%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.010 0.005 196.3 +50: Time: 0.025 0.013 196.9 50: (ns/day) (hour/ns) -50: Performance: 291.007 0.082 +50: Performance: 115.116 0.208 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -109229,7 +109258,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109259,14 +109288,14 @@ 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. 50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.8%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.126 0.063 199.7 +50: Time: 0.018 0.009 196.6 50: (ns/day) (hour/ns) -50: Performance: 23.369 1.027 +50: Performance: 163.377 0.147 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109297,7 +109326,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109326,15 +109355,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.014 0.007 197.5 +50: Time: 0.019 0.010 196.0 50: (ns/day) (hour/ns) -50: Performance: 202.140 0.119 +50: Performance: 148.330 0.162 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109365,7 +109394,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109394,15 +109423,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.1%. +50: Average load imbalance: 1.0%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.037 0.019 199.0 +50: Time: 0.019 0.009 196.0 50: (ns/day) (hour/ns) -50: Performance: 79.196 0.303 +50: Performance: 154.726 0.155 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -109433,7 +109462,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109462,15 +109491,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.8%. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 61%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.078 0.039 199.5 +50: Time: 0.019 0.009 196.0 50: (ns/day) (hour/ns) -50: Performance: 37.726 0.636 +50: Performance: 154.687 0.155 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -109501,7 +109530,7 @@ 50: 50: 50: There were 4 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109530,18 +109559,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 65%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 1.8%. +50: The balanceable part of the MD step is 62%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.139 0.070 199.7 +50: Time: 0.028 0.014 197.5 50: (ns/day) (hour/ns) -50: Performance: 21.128 1.136 +50: Performance: 101.913 0.235 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (2550 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (4712 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -109566,7 +109595,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109594,9 +109623,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.095 0.048 199.6 +50: Time: 0.019 0.010 197.3 50: (ns/day) (hour/ns) -50: Performance: 30.903 0.777 +50: Performance: 149.278 0.161 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -109620,7 +109649,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109648,9 +109677,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.008 0.004 195.7 +50: Time: 0.019 0.010 196.6 50: (ns/day) (hour/ns) -50: Performance: 344.076 0.070 +50: Performance: 151.787 0.158 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109676,7 +109705,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109704,9 +109733,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.005 196.2 +50: Time: 0.021 0.011 196.5 50: (ns/day) (hour/ns) -50: Performance: 307.363 0.078 +50: Performance: 135.076 0.178 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109732,7 +109761,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109760,9 +109789,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.009 0.004 195.8 +50: Time: 0.022 0.011 197.2 50: (ns/day) (hour/ns) -50: Performance: 326.986 0.073 +50: Performance: 130.958 0.183 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -109788,7 +109817,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109816,9 +109845,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.026 0.013 198.6 +50: Time: 0.017 0.009 196.1 50: (ns/day) (hour/ns) -50: Performance: 112.084 0.214 +50: Performance: 167.270 0.143 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -109844,7 +109873,7 @@ 50: 50: 50: There were 3 notes -50: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +50: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 50: The current CPU can measure timings more accurately than the code in 50: mdrun-mpi-coordination-test was configured to use. This might affect your simulation 50: speed as accurate timings are needed for load-balancing. @@ -109872,18 +109901,18 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.073 0.037 199.5 +50: Time: 0.023 0.011 197.5 50: (ns/day) (hour/ns) -50: Performance: 40.229 0.597 +50: Performance: 128.374 0.187 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (2480 ms) -50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (20027 ms total) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (4765 ms) +50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (37537 ms total) 50: 50: [----------] Global test environment tear-down -50: [==========] 27 tests from 3 test cases ran. (21187 ms total) +50: [==========] 27 tests from 3 test cases ran. (39790 ms total) 50: [ PASSED ] 27 tests. -50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 21.20 sec +50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 39.81 sec test 51 Start 51: GmxapiExternalInterfaceTests @@ -109893,7 +109922,7 @@ 51: [----------] Global test environment set-up. 51: [----------] 8 tests from GmxApiTest 51: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -51: Setting the LD random seed to -109117576 +51: Setting the LD random seed to 264240030 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -109915,7 +109944,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -109943,12 +109972,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.044 0.022 199.6 +51: Time: 0.019 0.010 198.0 51: (ns/day) (hour/ns) -51: Performance: 23.038 1.042 -51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (448 ms) +51: Performance: 52.613 0.456 +51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (728 ms) 51: [ RUN ] GmxApiTest.SystemConstruction -51: Setting the LD random seed to 2101207010 +51: Setting the LD random seed to 2146910189 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -109975,13 +110004,13 @@ 51: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 51: Note that mdrun will redetermine rlist based on the actual pair-list setup 51: This run will generate roughly 0 Mb of data -51: [ OK ] GmxApiTest.SystemConstruction (395 ms) +51: [ OK ] GmxApiTest.SystemConstruction (779 ms) 51: [ RUN ] GmxApiTest.SaneVersionComparisons 51: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 51: [ RUN ] GmxApiTest.VersionNamed0_1_Features 51: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 51: [ RUN ] GmxApiTest.RunnerBasicMD -51: Setting the LD random seed to 1845225455 +51: Setting the LD random seed to -3158274 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110003,7 +110032,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110031,12 +110060,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.009 0.005 198.0 +51: Time: 0.022 0.011 198.2 51: (ns/day) (hour/ns) -51: Performance: 105.860 0.227 -51: [ OK ] GmxApiTest.RunnerBasicMD (395 ms) +51: Performance: 45.478 0.528 +51: [ OK ] GmxApiTest.RunnerBasicMD (772 ms) 51: [ RUN ] GmxApiTest.RunnerReinitialize -51: Setting the LD random seed to -138543233 +51: Setting the LD random seed to 1601161139 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110058,7 +110087,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110090,10 +110119,10 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.038 0.019 199.4 +51: Time: 0.022 0.011 198.7 51: (ns/day) (hour/ns) -51: Performance: 187.777 0.128 -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Performance: 316.359 0.076 +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110116,12 +110145,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.009 0.005 197.4 +51: Time: 0.028 0.014 198.6 51: (ns/day) (hour/ns) -51: Performance: 753.104 0.032 -51: [ OK ] GmxApiTest.RunnerReinitialize (417 ms) +51: Performance: 248.233 0.097 +51: [ OK ] GmxApiTest.RunnerReinitialize (812 ms) 51: [ RUN ] GmxApiTest.RunnerContinuedMD -51: Setting the LD random seed to 2129641206 +51: Setting the LD random seed to -30609476 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110143,7 +110172,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110171,10 +110200,10 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.009 0.005 198.1 +51: Time: 0.019 0.010 198.2 51: (ns/day) (hour/ns) -51: Performance: 390.772 0.061 -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Performance: 191.923 0.125 +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110199,12 +110228,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.009 0.005 198.1 +51: Time: 0.031 0.016 198.5 51: (ns/day) (hour/ns) -51: Performance: 770.795 0.031 -51: [ OK ] GmxApiTest.RunnerContinuedMD (403 ms) +51: Performance: 225.625 0.106 +51: [ OK ] GmxApiTest.RunnerContinuedMD (822 ms) 51: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -51: Setting the LD random seed to -17302591 +51: Setting the LD random seed to 1610596348 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110226,7 +110255,7 @@ 51: 51: 51: There were 2 notes -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110254,10 +110283,10 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.057 0.028 199.5 +51: Time: 0.022 0.011 198.3 51: (ns/day) (hour/ns) -51: Performance: 11.887 2.019 -51: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +51: Performance: 30.804 0.779 +51: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 51: The current CPU can measure timings more accurately than the code in 51: gmxapi-test was configured to use. This might affect your simulation 51: speed as accurate timings are needed for load-balancing. @@ -110280,21 +110309,21 @@ 51: 2 steps, 0.0 ps. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.008 0.004 197.5 +51: Time: 0.020 0.010 198.2 51: (ns/day) (hour/ns) -51: Performance: 82.630 0.290 -51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (425 ms) -51: [----------] 8 tests from GmxApiTest (2483 ms total) +51: Performance: 33.487 0.717 +51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (799 ms) +51: [----------] 8 tests from GmxApiTest (4713 ms total) 51: 51: [----------] 1 test from GmxApiBasicTest 51: [ RUN ] GmxApiBasicTest.Status 51: [ OK ] GmxApiBasicTest.Status (0 ms) -51: [----------] 1 test from GmxApiBasicTest (1 ms total) +51: [----------] 1 test from GmxApiBasicTest (0 ms total) 51: 51: [----------] Global test environment tear-down -51: [==========] 9 tests from 2 test cases ran. (2484 ms total) +51: [==========] 9 tests from 2 test cases ran. (4713 ms total) 51: [ PASSED ] 9 tests. -51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 2.50 sec +51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 4.73 sec test 52 Start 52: GmxapiMpiTests @@ -110304,7 +110333,7 @@ 52: [----------] Global test environment set-up. 52: [----------] 8 tests from GmxApiTest 52: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -52: Setting the LD random seed to 1606610783 +52: Setting the LD random seed to -540158017 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110326,7 +110355,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110354,12 +110383,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.049 0.024 199.5 +52: Time: 0.021 0.011 197.5 52: (ns/day) (hour/ns) -52: Performance: 20.723 1.158 -52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (450 ms) +52: Performance: 47.749 0.503 +52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (712 ms) 52: [ RUN ] GmxApiTest.SystemConstruction -52: Setting the LD random seed to -78930049 +52: Setting the LD random seed to 996113726 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110386,13 +110415,13 @@ 52: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 52: Note that mdrun will redetermine rlist based on the actual pair-list setup 52: This run will generate roughly 0 Mb of data -52: [ OK ] GmxApiTest.SystemConstruction (397 ms) +52: [ OK ] GmxApiTest.SystemConstruction (764 ms) 52: [ RUN ] GmxApiTest.SaneVersionComparisons 52: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 52: [ RUN ] GmxApiTest.VersionNamed0_1_Features 52: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 52: [ RUN ] GmxApiTest.RunnerBasicMD -52: Setting the LD random seed to -268995111 +52: Setting the LD random seed to -2099525385 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110414,7 +110443,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110442,12 +110471,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.009 0.005 197.0 +52: Time: 0.030 0.015 199.0 52: (ns/day) (hour/ns) -52: Performance: 112.110 0.214 -52: [ OK ] GmxApiTest.RunnerBasicMD (399 ms) +52: Performance: 33.288 0.721 +52: [ OK ] GmxApiTest.RunnerBasicMD (784 ms) 52: [ RUN ] GmxApiTest.RunnerReinitialize -52: Setting the LD random seed to -36974145 +52: Setting the LD random seed to -1091179729 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110469,7 +110498,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110501,10 +110530,10 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.102 0.051 199.8 +52: Time: 0.027 0.014 198.7 52: (ns/day) (hour/ns) -52: Performance: 69.666 0.345 -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Performance: 261.700 0.092 +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110527,12 +110556,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.009 0.005 197.2 +52: Time: 0.026 0.013 198.8 52: (ns/day) (hour/ns) -52: Performance: 784.600 0.031 -52: [ OK ] GmxApiTest.RunnerReinitialize (462 ms) +52: Performance: 270.968 0.089 +52: [ OK ] GmxApiTest.RunnerReinitialize (807 ms) 52: [ RUN ] GmxApiTest.RunnerContinuedMD -52: Setting the LD random seed to -1150287877 +52: Setting the LD random seed to -1746404953 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110554,7 +110583,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110582,10 +110611,10 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.008 0.004 197.8 +52: Time: 0.028 0.014 198.8 52: (ns/day) (hour/ns) -52: Performance: 432.351 0.056 -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Performance: 130.267 0.184 +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110610,12 +110639,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.008 0.004 197.4 +52: Time: 0.023 0.012 198.1 52: (ns/day) (hour/ns) -52: Performance: 844.659 0.028 -52: [ OK ] GmxApiTest.RunnerContinuedMD (414 ms) +52: Performance: 300.387 0.080 +52: [ OK ] GmxApiTest.RunnerContinuedMD (789 ms) 52: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -52: Setting the LD random seed to -9767175 +52: Setting the LD random seed to 871349751 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110637,7 +110666,7 @@ 52: 52: 52: There were 2 notes -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110665,10 +110694,10 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.056 0.028 199.7 +52: Time: 0.023 0.012 198.7 52: (ns/day) (hour/ns) -52: Performance: 12.097 1.984 -52: Compiled SIMD: SSE2, but for this host/run AVX2_256 might be better (see log). +52: Performance: 28.690 0.837 +52: Compiled SIMD: SSE2, but for this host/run AVX_256 might be better (see log). 52: The current CPU can measure timings more accurately than the code in 52: gmxapi-mpi-test was configured to use. This might affect your simulation 52: speed as accurate timings are needed for load-balancing. @@ -110691,11 +110720,11 @@ 52: 2 steps, 0.0 ps. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.007 0.004 196.3 +52: Time: 0.022 0.011 198.6 52: (ns/day) (hour/ns) -52: Performance: 89.293 0.269 -52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (435 ms) -52: [----------] 8 tests from GmxApiTest (2557 ms total) +52: Performance: 30.558 0.785 +52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (786 ms) +52: [----------] 8 tests from GmxApiTest (4642 ms total) 52: 52: [----------] 1 test from GmxApiBasicTest 52: [ RUN ] GmxApiBasicTest.Status @@ -110703,9 +110732,9 @@ 52: [----------] 1 test from GmxApiBasicTest (0 ms total) 52: 52: [----------] Global test environment tear-down -52: [==========] 9 tests from 2 test cases ran. (2557 ms total) +52: [==========] 9 tests from 2 test cases ran. (4642 ms total) 52: [ PASSED ] 9 tests. -52/54 Test #52: GmxapiMpiTests ...................... Passed 2.57 sec +52/54 Test #52: GmxapiMpiTests ...................... Passed 4.66 sec test 53 Start 53: GmxapiInternalInterfaceTests @@ -110715,7 +110744,7 @@ 53: [----------] Global test environment set-up. 53: [----------] 2 tests from GmxApiTest 53: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -53: Setting the LD random seed to -86114818 +53: Setting the LD random seed to -1225723149 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -110742,9 +110771,9 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (397 ms) +53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (657 ms) 53: [ RUN ] GmxApiTest.CreateApiWorkflow -53: Setting the LD random seed to -1376923649 +53: Setting the LD random seed to -73409025 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -110771,13 +110800,13 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.CreateApiWorkflow (399 ms) -53: [----------] 2 tests from GmxApiTest (796 ms total) +53: [ OK ] GmxApiTest.CreateApiWorkflow (662 ms) +53: [----------] 2 tests from GmxApiTest (1319 ms total) 53: 53: [----------] Global test environment tear-down -53: [==========] 2 tests from 1 test case ran. (796 ms total) +53: [==========] 2 tests from 1 test case ran. (1320 ms total) 53: [ PASSED ] 2 tests. -53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 0.81 sec +53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 1.33 sec test 54 Start 54: GmxapiInternalsMpiTests @@ -110787,7 +110816,7 @@ 54: [----------] Global test environment set-up. 54: [----------] 2 tests from GmxApiTest 54: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -54: Setting the LD random seed to -1210462245 +54: Setting the LD random seed to -262252 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -110814,9 +110843,9 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (384 ms) +54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (672 ms) 54: [ RUN ] GmxApiTest.CreateApiWorkflow -54: Setting the LD random seed to -268980245 +54: Setting the LD random seed to 2076180478 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -110843,31 +110872,31 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.CreateApiWorkflow (386 ms) -54: [----------] 2 tests from GmxApiTest (770 ms total) +54: [ OK ] GmxApiTest.CreateApiWorkflow (679 ms) +54: [----------] 2 tests from GmxApiTest (1351 ms total) 54: 54: [----------] Global test environment tear-down -54: [==========] 2 tests from 1 test case ran. (770 ms total) +54: [==========] 2 tests from 1 test case ran. (1351 ms total) 54: [ PASSED ] 2 tests. -54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 0.78 sec +54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 1.37 sec 98% tests passed, 1 tests failed out of 54 Label Time Summary: -GTest = 77.99 sec*proc (54 tests) -IntegrationTest = 26.00 sec*proc (12 tests) -MpiTest = 48.24 sec*proc (8 tests) -SlowTest = 42.68 sec*proc (2 tests) -UnitTest = 9.32 sec*proc (40 tests) +GTest = 133.16 sec*proc (54 tests) +IntegrationTest = 42.56 sec*proc (12 tests) +MpiTest = 84.46 sec*proc (8 tests) +SlowTest = 74.91 sec*proc (2 tests) +UnitTest = 15.69 sec*proc (40 tests) -Total Test time (real) = 78.06 sec +Total Test time (real) = 133.21 sec The following tests FAILED: 5 - MdlibUnitTest (Failed) Errors while running CTest touch build-basic dh_testdir -/usr/bin/make -j16 -C build/mpich +/usr/bin/make -j7 -C build/mpich make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich//CMakeFiles/progress.marks @@ -110879,122 +110908,122 @@ /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +Scanning dependencies of target scanner Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +Scanning dependencies of target thread_mpi make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -Scanning dependencies of target thread_mpi +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target linearalgebra /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -Scanning dependencies of target scanner -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +Scanning dependencies of target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -[ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -Scanning dependencies of target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +[ 0%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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'/build/reproducible-path/gromacs-2020.6/build/mpich' [ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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'/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 1%] Built target lmfit_objlib -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops 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/build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. 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CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 2%] Built target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/build/reproducible-path/gromacs-2020.6/build/mpich' [ 2%] Built target scanner +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 5%] Built target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -111396,6 +111425,10 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/groupcoord.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/lincs.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/md_support.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdatoms.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdebin_bar.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdoutf.cpp @@ -111404,10 +111437,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qmmm.cpp @@ -111460,13 +111489,13 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp @@ -111612,7 +111641,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -j16 -C build/mpich-dp +/usr/bin/make -j7 -C build/mpich-dp make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich-dp//CMakeFiles/progress.marks @@ -111626,120 +111655,120 @@ /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich-dp 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'/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +Scanning dependencies of target thread_mpi +Scanning dependencies of target scanner +Scanning dependencies of target linearalgebra +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -Scanning dependencies of target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -Scanning dependencies of target scanner -Scanning dependencies of target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Scanning dependencies of target tng_io_obj -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -Scanning dependencies of target modularsimulator [ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 1%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 1%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp -[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 2%] Built target scanner +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 2%] Built target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 5%] Built target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' @@ -112140,6 +112169,10 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/groupcoord.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/lincs.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/md_support.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdatoms.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdebin_bar.cpp @@ -112148,10 +112181,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/nsgrid.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp @@ -112204,15 +112233,15 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program_impl.cpp @@ -112360,7 +112389,7 @@ sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian -/usr/bin/make -j16 -C build/mpich tests +/usr/bin/make -j7 -C build/mpich tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -112374,42 +112403,42 @@ /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -112417,30 +112446,30 @@ make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 1%] Built target thread_mpi make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 0%] Built target scanner -[ 1%] Built target thread_mpi -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target gtest -[ 1%] Built target lmfit_objlib -[ 3%] Built target linearalgebra +[ 1%] Built target linearalgebra +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +[ 2%] Built target scanner [ 3%] Built target tng_io_obj +[ 3%] Built target lmfit_objlib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= [ 5%] Built target modularsimulator [ 5%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +Scanning dependencies of target gtest +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -112510,182 +112539,294 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -Scanning dependencies of target onlinehelp-test-shared +Scanning dependencies of target utility-mpi-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -Scanning dependencies of target hardware-test -Scanning dependencies of target fft-test +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target applied_forces-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -Scanning dependencies of target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +Scanning dependencies of target selection-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target gpu_utils-test -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -Scanning dependencies of target mdrunutility-test-shared +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target domdec-test -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target testutils-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +[ 77%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test-shared +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target onlinehelp-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target testutils-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +Scanning dependencies of target domdec-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -Scanning dependencies of target mdspan-test -Scanning dependencies of target ewald-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target applied_forces-test +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -Scanning dependencies of target selection-test -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build -Scanning dependencies of target applied_forces-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +[ 77%] Built target domdec-test +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +Scanning dependencies of target fft-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 78%] Built target selection-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target gpu_utils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 78%] Built target fft-test +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +Scanning dependencies of target hardware-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test -Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -Scanning dependencies of target utility-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +[ 78%] Built target hardware-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrunutility-test-shared +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 80%] Built target mdlib-test +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= +Scanning dependencies of target mdspan-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 81%] Built target mdrunutility-test-shared +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 76%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 81%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= -[ 77%] Built target testutils-mpi-test -/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp Scanning dependencies of target options-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target pbcutil-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 82%] Built target onlinehelp-test +/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= +Scanning dependencies of target pbcutil-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 77%] Built target onlinehelp-test-shared +[ 82%] Built target pbcutil-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread Scanning dependencies of target random-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target mdrunutility-test-shared +[ 83%] Built target ewald-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -112694,15 +112835,15 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target hardware-test +[ 83%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -112711,14 +112852,14 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target fft-test +[ 83%] Built target mdspan-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -112727,16 +112868,20 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target restraintpotential-test +[ 84%] Built target taskassignment-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= @@ -112745,8 +112890,20 @@ /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target pbcutil-test +[ 84%] Built target table-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -112755,8 +112912,20 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target domdec-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +[ 85%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -112765,67 +112934,26 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target pull-test +[ 86%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 87%] Built target topology-test Scanning dependencies of target simd-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 80%] Built target taskassignment-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp Scanning dependencies of target compat-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && 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/usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 81%] Built target topology-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -112834,40 +112962,44 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 81%] Built target testutils-test +[ 88%] Built target options-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 81%] Built target applied_forces-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 90%] Built target math-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target awh-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target table-test +[ 91%] Built target awh-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -112876,17 +113008,18 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target mdspan-test +[ 91%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -112895,156 +113028,52 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target gpu_utils-test -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -Scanning dependencies of target onlinehelp-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target mdrunutility-test +[ 92%] Built target fileio-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 83%] Built target random-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 84%] Built target onlinehelp-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +[ 93%] Built target commandline-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -cd 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 85%] Built target ewald-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +[ 93%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp 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CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +[ 94%] Built target compat-test cd 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CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 92%] Built target selection-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 93%] Built target commandline-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 94%] Built target options-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 96%] Built target math-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[100%] Built target utility-test +[ 97%] Built target utility-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so /usr/lib/i386-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[100%] Built target simd-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -113085,13 +113114,13 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput @@ -113100,7 +113129,7 @@ 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -113112,15 +113141,15 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData -1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData @@ -113130,9 +113159,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys -1: [ OK ] ReferenceDataTest.HandlesAnys (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey @@ -113140,7 +113169,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -113148,11 +113177,11 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds @@ -113160,18 +113189,18 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues -1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) +1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (5 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (7 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -113205,17 +113234,17 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (0 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (9 ms total) +1: [==========] 59 tests from 5 test cases ran. (13 ms total) 1: [ PASSED ] 59 tests. - 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.03 sec + 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -113225,11 +113254,11 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (0 ms total) +2: [ OK ] MpiSelfTest.Runs (2 ms) +2: [----------] 1 test from MpiSelfTest (2 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (0 ms total) +2: [==========] 1 test from 1 test case ran. (2 ms total) 2: [ PASSED ] 1 test. 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.03 sec test 3 @@ -113256,14 +113285,14 @@ 3: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.Move 3: [ OK ] AllocatorTest/1.Move (0 ms) 3: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/1 (0 ms total) +3: [----------] 5 tests from AllocatorTest/1 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -113302,20 +113331,20 @@ 3: [ OK ] AllocatorTest/4.Move (0 ms) 3: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/4 (1 ms total) +3: [----------] 5 tests from AllocatorTest/4 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.Move 3: [ OK ] AllocatorTest/5.Move (0 ms) 3: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/5 (0 ms total) +3: [----------] 5 tests from AllocatorTest/5 (1 ms total) 3: 3: [----------] 1 test from AllocatorUntypedTest 3: [ RUN ] AllocatorUntypedTest.Comparison @@ -113481,7 +113510,7 @@ 3: 3: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks -3: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (1 ms) +3: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 3: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks @@ -113498,7 +113527,7 @@ 3: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/7 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -113540,7 +113569,7 @@ 3: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/9 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/9 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks @@ -113687,7 +113716,7 @@ 3: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/16 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks @@ -113775,7 +113804,7 @@ 3: [ OK ] EnumerationHelpersTest.EnumerationArrayCountIsSafe (0 ms) 3: [ RUN ] EnumerationHelpersTest.ArrayRefOfEnumerationArrayWorks 3: [ OK ] EnumerationHelpersTest.ArrayRefOfEnumerationArrayWorks (0 ms) -3: [----------] 4 tests from EnumerationHelpersTest (1 ms total) +3: [----------] 4 tests from EnumerationHelpersTest (0 ms total) 3: 3: [----------] 9 tests from FixedCapacityVectorTest 3: [ RUN ] FixedCapacityVectorTest.IsEmpty @@ -113819,8 +113848,8 @@ 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms @@ -113834,13 +113863,13 @@ 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules -3: [ OK ] TreeValueTransformTest.ScopedTransformRules (1 ms) -3: [----------] 6 tests from TreeValueTransformTest (1 ms total) +3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) +3: [----------] 6 tests from TreeValueTransformTest (0 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError 3: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) -3: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) +3: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 3: 3: [----------] 7 tests from LoggerTest 3: [ RUN ] LoggerTest.EmptyLoggerWorks @@ -113884,7 +113913,7 @@ 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork 3: [ OK ] PathTest.SearchOperationsWork (0 ms) -3: [----------] 2 tests from PathTest (0 ms total) +3: [----------] 2 tests from PathTest (1 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -113912,7 +113941,7 @@ 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitiveInLength (0 ms) -3: [----------] 9 tests from StringUtilityTest (1 ms total) +3: [----------] 9 tests from StringUtilityTest (0 ms total) 3: 3: [----------] 2 tests from FormatStringTest 3: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -113929,7 +113958,7 @@ 3: [----------] 1 test from formatAndJoinTest 3: [ RUN ] formatAndJoinTest.Works 3: [ OK ] formatAndJoinTest.Works (0 ms) -3: [----------] 1 test from formatAndJoinTest (0 ms total) +3: [----------] 1 test from formatAndJoinTest (1 ms total) 3: 3: [----------] 1 test from JoinStringsTest 3: [ RUN ] JoinStringsTest.Works @@ -113980,19 +114009,19 @@ 3: [ RUN ] TextWriterTest.WritesLinesInParts 3: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 3: [ RUN ] TextWriterTest.WritesWrappedLines -3: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) +3: [ OK ] TextWriterTest.WritesWrappedLines (1 ms) 3: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 3: [ RUN ] TextWriterTest.TracksNewlines 3: [ OK ] TextWriterTest.TracksNewlines (0 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -3: [----------] 6 tests from TextWriterTest (0 ms total) +3: [----------] 6 tests from TextWriterTest (1 ms total) 3: 3: [----------] 1 test from TypeTraitsTest 3: [ RUN ] TypeTraitsTest.IsIntegralConstant 3: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) -3: [----------] 1 test from TypeTraitsTest (1 ms total) +3: [----------] 1 test from TypeTraitsTest (0 ms total) 3: 3: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 3: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 @@ -114082,7 +114111,7 @@ 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (0 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -114102,9 +114131,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (8 ms total) +3: [==========] 347 tests from 56 test cases ran. (14 ms total) 3: [ PASSED ] 347 tests. - 3/30 Test #3: UtilityUnitTests ................. Passed 0.02 sec + 3/30 Test #3: UtilityUnitTests ................. Passed 0.04 sec test 4 Start 4: UtilityMpiUnitTests @@ -114114,7 +114143,7 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier 4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) 4: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) @@ -114122,7 +114151,7 @@ 4: [----------] Global test environment tear-down 4: [==========] 2 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 2 tests. - 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.02 sec + 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.03 sec test 5 Start 5: MdlibUnitTest @@ -114137,7 +114166,7 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (0 ms) +5: [ OK ] PrEbinTest.HandlesAverages (1 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) 5: [----------] 2 tests from PrEbinTest (1 ms total) @@ -114194,16 +114223,16 @@ 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (0 ms total) +5: [----------] 9 tests from UpdateGroups (1 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -5: [----------] 1 test from UpdateGroupsCog (1 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +5: [----------] 1 test from UpdateGroupsCog (0 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 @@ -114257,7 +114286,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/2 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/3 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/3 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/3 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/4 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/4 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/5 @@ -114295,7 +114324,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/6 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/6 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/6 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/7 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/8 @@ -114321,7 +114350,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 @@ -114345,9 +114374,9 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/12 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/12 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/12 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/13 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/13 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/14 @@ -114370,29 +114399,29 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (2 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (6 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 -5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) +5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (5 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (8 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) @@ -114405,7 +114434,7 @@ 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (1 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (18 ms total) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (28 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -114456,13 +114485,13 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (0 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/1 -5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/1 (1 ms) +5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/1 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/2 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/2 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/3 @@ -114487,7 +114516,7 @@ 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/12 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 (0 ms) -5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (1 ms total) +5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (0 ms total) 5: 5: [----------] 16 tests from WithParameters/LeapFrogTest 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 @@ -114495,34 +114524,34 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/1 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (3 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (13 ms total) +5: [----------] 16 tests from WithParameters/LeapFrogTest (21 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -114530,9 +114559,9 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 @@ -114540,23 +114569,23 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (2 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (5 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (8 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (41 ms total) +5: [==========] 187 tests from 13 test cases ran. (66 ms total) 5: [ PASSED ] 187 tests. - 5/30 Test #5: MdlibUnitTest .................... Passed 0.06 sec + 5/30 Test #5: MdlibUnitTest .................... Passed 0.09 sec test 6 Start 6: AppliedForcesUnitTest @@ -114566,16 +114595,16 @@ 6: [----------] Global test environment set-up. 6: [----------] 2 tests from DensityFittingTest 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows -6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) +6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) 6: [ RUN ] DensityFittingTest.SingleAtom 6: [ OK ] DensityFittingTest.SingleAtom (0 ms) -6: [----------] 2 tests from DensityFittingTest (0 ms total) +6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters 6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive -6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) +6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (1 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive @@ -114611,15 +114640,15 @@ 6: [ RUN ] ElectricFieldTest.Static 6: [ OK ] ElectricFieldTest.Static (0 ms) 6: [ RUN ] ElectricFieldTest.Oscillating -6: [ OK ] ElectricFieldTest.Oscillating (0 ms) +6: [ OK ] ElectricFieldTest.Oscillating (1 ms) 6: [ RUN ] ElectricFieldTest.Pulsed 6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (0 ms total) +6: [----------] 3 tests from ElectricFieldTest (1 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (1 ms total) +6: [==========] 20 tests from 4 test cases ran. (3 ms total) 6: [ PASSED ] 20 tests. - 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.01 sec + 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.02 sec test 7 Start 7: CommandLineUnitTests @@ -114629,18 +114658,18 @@ 7: [----------] Global test environment set-up. 7: [----------] 3 tests from CommandLineHelpModuleTest 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) +7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) +7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions @@ -114659,9 +114688,9 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames @@ -114699,7 +114728,7 @@ 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath -7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (1 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath @@ -114707,19 +114736,19 @@ 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink -7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -7: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) +7: [----------] 6 tests from CommandLineProgramContextTest (2 ms total) 7: 7: [----------] 3 tests from OutputNamesTest 7: [ RUN ] OutputNamesTest.CanBeSuffixed -7: [ OK ] OutputNamesTest.CanBeSuffixed (1 ms) +7: [ OK ] OutputNamesTest.CanBeSuffixed (0 ms) 7: [ RUN ] OutputNamesTest.HasSuffixFromNoAppend 7: [ OK ] OutputNamesTest.HasSuffixFromNoAppend (0 ms) 7: [ RUN ] OutputNamesTest.CanHavePartNumberAdded 7: [ OK ] OutputNamesTest.CanHavePartNumberAdded (0 ms) -7: [----------] 3 tests from OutputNamesTest (1 ms total) +7: [----------] 3 tests from OutputNamesTest (0 ms total) 7: 7: [----------] 21 tests from ParseCommonArgsTest 7: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -114755,21 +114784,21 @@ 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) +7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (6 ms total) +7: [==========] 59 tests from 7 test cases ran. (8 ms total) 7: [ PASSED ] 59 tests. - 7/30 Test #7: CommandLineUnitTests ............. Passed 0.02 sec + 7/30 Test #7: CommandLineUnitTests ............. Passed 0.03 sec test 8 Start 8: DomDecTests @@ -114804,7 +114833,7 @@ 8: [----------] Global test environment tear-down 8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/30 Test #8: DomDecTests ...................... Passed 0.01 sec + 8/30 Test #8: DomDecTests ...................... Passed 0.02 sec test 9 Start 9: EwaldUnitTests @@ -114814,81 +114843,81 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (2 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (2 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (4 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (7 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (41 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (66 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 @@ -114900,13 +114929,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 @@ -114922,29 +114951,29 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 @@ -114956,9 +114985,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 @@ -114974,7 +115003,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 @@ -114984,13 +115013,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 @@ -115002,13 +115031,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 @@ -115020,13 +115049,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 @@ -115038,13 +115067,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 @@ -115060,11 +115089,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 @@ -115076,13 +115105,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 @@ -115094,13 +115123,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 @@ -115112,13 +115141,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 @@ -115130,31 +115159,31 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 @@ -115165,80 +115194,80 @@ 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (31 ms total) +9: [----------] 144 tests from SaneInput/PmeGatherTest (48 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (12 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (19 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (4 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (6 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (6 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (10 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -115246,34 +115275,34 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (11 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (17 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -115281,7 +115310,7 @@ 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 @@ -115293,73 +115322,73 @@ 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (11 ms total) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (17 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (14 ms total) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (20 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (7 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (36 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (53 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (185 ms total) +9: [==========] 257 tests from 10 test cases ran. (277 ms total) 9: [ PASSED ] 257 tests. - 9/30 Test #9: EwaldUnitTests ................... Passed 0.21 sec + 9/30 Test #9: EwaldUnitTests ................... Passed 0.32 sec test 10 Start 10: FFTUnitTests @@ -115369,20 +115398,20 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (19 ms) -10: [----------] 2 tests from ManyFFTTest (25 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (28 ms) +10: [----------] 2 tests from ManyFFTTest (37 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (5 ms) -10: [----------] 1 test from FFTTest (5 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (7 ms) +10: [----------] 1 test from FFTTest (7 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [----------] 1 test from FFFTest3D (3 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 @@ -115390,11 +115419,11 @@ 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 @@ -115402,15 +115431,15 @@ 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (10 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (16 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (16 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (35 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (22 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (50 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (67 ms total) +10: [==========] 14 tests from 4 test cases ran. (98 ms total) 10: [ PASSED ] 14 tests. -10/30 Test #10: FFTUnitTests ..................... Passed 0.08 sec +10/30 Test #10: FFTUnitTests ..................... Passed 0.12 sec test 11 Start 11: GpuUtilsUnitTests @@ -115562,12 +115591,12 @@ 11: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 11: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) +11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 11: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.Move 11: [ OK ] AllocatorTest/0.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/0 (0 ms total) +11: [----------] 4 tests from AllocatorTest/0 (1 ms total) 11: 11: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -115578,7 +115607,7 @@ 11: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/1.Move 11: [ OK ] AllocatorTest/1.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/1 (1 ms total) +11: [----------] 4 tests from AllocatorTest/1 (0 ms total) 11: 11: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 11: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -115603,9 +115632,9 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (1 ms total) +11: [==========] 62 tests from 20 test cases ran. (2 ms total) 11: [ PASSED ] 62 tests. -11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.01 sec +11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.02 sec test 12 Start 12: HardwareUnitTests @@ -115615,17 +115644,17 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (18 ms) +12: [ OK ] HardwareTopologyTest.Execute (14 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (15 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (12 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (12 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (13 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (15 ms) -12: [----------] 4 tests from HardwareTopologyTest (61 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (12 ms) +12: [----------] 4 tests from HardwareTopologyTest (51 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (61 ms total) +12: [==========] 4 tests from 1 test case ran. (51 ms total) 12: [ PASSED ] 4 tests. 12/30 Test #12: HardwareUnitTests ................ Passed 0.07 sec test 13 @@ -115703,14 +115732,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (16 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (43 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (13 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (43 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (16 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (25 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (45 ms total) +13: [----------] 12 tests from DensitySimilarityTest (112 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -115744,7 +115773,7 @@ 13: [ OK ] ExponentialMovingAverage.InverseLagTimeCorrect (0 ms) 13: [ RUN ] ExponentialMovingAverage.RoundTripAsKeyValueTree 13: [ OK ] ExponentialMovingAverage.RoundTripAsKeyValueTree (0 ms) -13: [----------] 8 tests from ExponentialMovingAverage (0 ms total) +13: [----------] 8 tests from ExponentialMovingAverage (1 ms total) 13: 13: [----------] 21 tests from FunctionTest 13: [ RUN ] FunctionTest.StaticLog2 @@ -115778,18 +115807,18 @@ 13: [ RUN ] FunctionTest.InvsixthrootDouble 13: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootInteger -13: [ OK ] FunctionTest.InvsixthrootInteger (1 ms) +13: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.Powers 13: [ OK ] FunctionTest.Powers (0 ms) 13: [ RUN ] FunctionTest.ErfInvFloat 13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble -13: [ OK ] FunctionTest.ErfInvDouble (0 ms) +13: [ OK ] FunctionTest.ErfInvDouble (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (1 ms total) +13: [----------] 21 tests from FunctionTest (2 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -115800,7 +115829,7 @@ 13: [ OK ] GaussianOn1DLattice.complementaryAmplitudesSumToZero (0 ms) 13: [ RUN ] GaussianOn1DLattice.doesNotOverflowForLargeRange 13: [ OK ] GaussianOn1DLattice.doesNotOverflowForLargeRange (0 ms) -13: [----------] 4 tests from GaussianOn1DLattice (0 ms total) +13: [----------] 4 tests from GaussianOn1DLattice (1 ms total) 13: 13: [----------] 9 tests from GaussTransformTest 13: [ RUN ] GaussTransformTest.isZeroUponConstruction @@ -115836,8 +115865,8 @@ 13: [ RUN ] InvertMatrixTest.IdentityIsImpotent 13: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 13: [ RUN ] InvertMatrixTest.ComputesInverse -13: [ OK ] InvertMatrixTest.ComputesInverse (1 ms) -13: [----------] 2 tests from InvertMatrixTest (1 ms total) +13: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) +13: [----------] 2 tests from InvertMatrixTest (0 ms total) 13: 13: [----------] 2 tests from InvertBoxMatrixTest 13: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent @@ -115893,7 +115922,7 @@ 13: [ RUN ] MultiDimArrayTest.canMoveConstructDynamic 13: [ OK ] MultiDimArrayTest.canMoveConstructDynamic (0 ms) 13: [ RUN ] MultiDimArrayTest.canMoveAssignStatic -13: [ OK ] MultiDimArrayTest.canMoveAssignStatic (0 ms) +13: [ OK ] MultiDimArrayTest.canMoveAssignStatic (1 ms) 13: [ RUN ] MultiDimArrayTest.canMoveAssignDynamic 13: [ OK ] MultiDimArrayTest.canMoveAssignDynamic (0 ms) 13: [ RUN ] MultiDimArrayTest.canCopyConstructStatic @@ -115930,7 +115959,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (0 ms total) +13: [----------] 25 tests from MultiDimArrayTest (1 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -116128,12 +116157,12 @@ 13: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 13: [ RUN ] RVecTest.MoveAssignmentWorks 13: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -13: [----------] 37 tests from RVecTest (1 ms total) +13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (49 ms total) +13: [==========] 204 tests from 29 test cases ran. (118 ms total) 13: [ PASSED ] 204 tests. -13/30 Test #13: MathUnitTests .................... Passed 0.06 sec +13/30 Test #13: MathUnitTests .................... Passed 0.14 sec test 14 Start 14: MdrunUtilityUnitTests @@ -116147,7 +116176,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 14: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads @@ -116157,7 +116186,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto @@ -116168,22 +116197,22 @@ 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -14: [----------] 17 tests from ThreadAffinityTest (2 ms total) +14: [----------] 17 tests from ThreadAffinityTest (3 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (2 ms total) +14: [==========] 17 tests from 1 test case ran. (3 ms total) 14: [ PASSED ] 17 tests. -14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.01 sec +14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.02 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -116197,20 +116226,20 @@ 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (1 ms total) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (2 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly @@ -116224,9 +116253,9 @@ 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (2 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (3 ms total) +15: [==========] 13 tests from 2 test cases ran. (4 ms total) 15: [ PASSED ] 13 tests. -15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.02 sec +15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.03 sec test 16 Start 16: MDSpanTests @@ -116273,7 +116302,7 @@ 16: [ OK ] MdSpanExtension.multiplicationWorks (0 ms) 16: [ RUN ] MdSpanExtension.divisionWorks 16: [ OK ] MdSpanExtension.divisionWorks (0 ms) -16: [----------] 8 tests from MdSpanExtension (0 ms total) +16: [----------] 8 tests from MdSpanExtension (1 ms total) 16: 16: [----------] 3 tests from LayoutTests 16: [ RUN ] LayoutTests.LayoutRightConstruction @@ -116320,9 +116349,9 @@ 16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (0 ms total) +16: [==========] 32 tests from 7 test cases ran. (1 ms total) 16: [ PASSED ] 32 tests. -16/30 Test #16: MDSpanTests ...................... Passed 0.01 sec +16/30 Test #16: MDSpanTests ...................... Passed 0.02 sec test 17 Start 17: OnlineHelpUnitTests @@ -116343,7 +116372,7 @@ 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (0 ms total) +17: [----------] 6 tests from TextTableFormatterTest (1 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -116356,10 +116385,10 @@ 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) +17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 17: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) -17: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) +17: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 17: 17: [----------] 11 tests from HelpWriterContextTest 17: [ RUN ] HelpWriterContextTest.FormatsParagraphs @@ -116367,7 +116396,7 @@ 17: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace -17: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) +17: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsLiteralText 17: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning @@ -116383,13 +116412,13 @@ 17: [ RUN ] HelpWriterContextTest.FormatsGridTable 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles -17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -17: [----------] 11 tests from HelpWriterContextTest (0 ms total) +17: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms) +17: [----------] 11 tests from HelpWriterContextTest (2 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (1 ms total) +17: [==========] 22 tests from 4 test cases ran. (3 ms total) 17: [ PASSED ] 22 tests. -17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.01 sec +17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.02 sec test 18 Start 18: OptionsUnitTests @@ -116412,7 +116441,7 @@ 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension -18: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) +18: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (1 ms) 18: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 18: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 18: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption @@ -116427,7 +116456,7 @@ 18: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 18: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 18: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -18: [----------] 8 tests from FileNameOptionTest (0 ms total) +18: [----------] 8 tests from FileNameOptionTest (1 ms total) 18: 18: [----------] 15 tests from FileNameOptionManagerTest 18: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension @@ -116460,7 +116489,7 @@ 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -116473,7 +116502,7 @@ 18: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 18: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter -18: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (1 ms) +18: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 18: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesMissingValue @@ -116486,7 +116515,7 @@ 18: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 18: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -18: [----------] 9 tests from OptionsAssignerTest (1 ms total) +18: [----------] 9 tests from OptionsAssignerTest (0 ms total) 18: 18: [----------] 4 tests from OptionsAssignerBooleanTest 18: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -116525,8 +116554,8 @@ 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment -18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -18: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (1 ms) +18: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 18: 18: [----------] 5 tests from OptionsAssignerDoubleTest 18: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -116626,9 +116655,9 @@ 18: 18: [----------] 5 tests from TreeValueSupportCheckTest 18: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty -18: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (1 ms) +18: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree -18: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) +18: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (1 ms) 18: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 18: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 @@ -116669,12 +116698,12 @@ 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (0 ms total) +18: [----------] 8 tests from TreeValueSupportTest (1 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (2 ms total) +18: [==========] 110 tests from 18 test cases ran. (5 ms total) 18: [ PASSED ] 110 tests. -18/30 Test #18: OptionsUnitTests ................. Passed 0.01 sec +18/30 Test #18: OptionsUnitTests ................. Passed 0.03 sec test 19 Start 19: PbcutilUnitTest @@ -116684,7 +116713,7 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) +19: [ OK ] PbcTest.CalcShiftsWorks (0 ms) 19: [----------] 1 test from PbcTest (1 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest @@ -116697,7 +116726,7 @@ 19: [----------] Global test environment tear-down 19: [==========] 3 tests from 2 test cases ran. (1 ms total) 19: [ PASSED ] 3 tests. -19/30 Test #19: PbcutilUnitTest .................. Passed 0.01 sec +19/30 Test #19: PbcutilUnitTest .................. Passed 0.03 sec test 20 Start 20: RandomUnitTests @@ -116707,7 +116736,7 @@ 20: [----------] Global test environment set-up. 20: [----------] 4 tests from ExponentialDistributionTest 20: [ RUN ] ExponentialDistributionTest.Output -20: [ OK ] ExponentialDistributionTest.Output (1 ms) +20: [ OK ] ExponentialDistributionTest.Output (0 ms) 20: [ RUN ] ExponentialDistributionTest.Logical 20: [ OK ] ExponentialDistributionTest.Logical (0 ms) 20: [ RUN ] ExponentialDistributionTest.Reset @@ -116747,7 +116776,7 @@ 20: [ RUN ] TabulatedNormalDistributionTest.Output14 20: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Output16 -20: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) +20: [ OK ] TabulatedNormalDistributionTest.Output16 (1 ms) 20: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 20: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Logical @@ -116756,12 +116785,12 @@ 20: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.AltParam 20: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -20: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) +20: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -116780,14 +116809,14 @@ 20: 20: [----------] 4 tests from UniformIntDistributionTest 20: [ RUN ] UniformIntDistributionTest.Output -20: [ OK ] UniformIntDistributionTest.Output (0 ms) +20: [ OK ] UniformIntDistributionTest.Output (1 ms) 20: [ RUN ] UniformIntDistributionTest.Logical 20: [ OK ] UniformIntDistributionTest.Logical (0 ms) 20: [ RUN ] UniformIntDistributionTest.Reset 20: [ OK ] UniformIntDistributionTest.Reset (0 ms) 20: [ RUN ] UniformIntDistributionTest.AltParam 20: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from UniformIntDistributionTest (0 ms total) +20: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 20: 20: [----------] 5 tests from UniformRealDistributionTest 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical @@ -116812,11 +116841,11 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 @@ -116824,9 +116853,9 @@ 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (4 ms total) +20: [==========] 44 tests from 10 test cases ran. (7 ms total) 20: [ PASSED ] 44 tests. -20/30 Test #20: RandomUnitTests .................. Passed 0.03 sec +20/30 Test #20: RandomUnitTests .................. Passed 0.04 sec test 21 Start 21: RestraintTests @@ -116840,9 +116869,9 @@ 21: [----------] 1 test from RestraintManager (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 1 test from 1 test case ran. (0 ms total) +21: [==========] 1 test from 1 test case ran. (1 ms total) 21: [ PASSED ] 1 test. -21/30 Test #21: RestraintTests ................... Passed 0.01 sec +21/30 Test #21: RestraintTests ................... Passed 0.02 sec test 22 Start 22: TableUnitTests @@ -116852,54 +116881,54 @@ 22: [----------] Global test environment set-up. 22: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (0 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (1 ms) +22: [ OK ] SplineTableTest/0.Sinc (5 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (9 ms) +22: [ OK ] SplineTableTest/0.LJ12 (22 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (17 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (27 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (19 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (33 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (5 ms) +22: [ OK ] SplineTableTest/0.Simd (7 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (16 ms) -22: [----------] 10 tests from SplineTableTest/0 (70 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (25 ms) +22: [----------] 10 tests from SplineTableTest/0 (127 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (2 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (0 ms) +22: [ OK ] SplineTableTest/1.Sinc (1 ms) 22: [ RUN ] SplineTableTest/1.LJ12 22: [ OK ] SplineTableTest/1.LJ12 (1 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (4 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (2 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (3 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (0 ms) +22: [ OK ] SplineTableTest/1.Simd (1 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (3 ms) -22: [----------] 10 tests from SplineTableTest/1 (14 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (4 ms) +22: [----------] 10 tests from SplineTableTest/1 (24 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (85 ms total) +22: [==========] 20 tests from 2 test cases ran. (151 ms total) 22: [ PASSED ] 20 tests. -22/30 Test #22: TableUnitTests ................... Passed 0.10 sec +22/30 Test #22: TableUnitTests ................... Passed 0.18 sec test 23 Start 23: TaskAssignmentUnitTests @@ -116916,13 +116945,13 @@ 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow -23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (0 ms) -23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (0 ms total) +23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (1 ms) +23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (1 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 3 tests from 2 test cases ran. (1 ms total) 23: [ PASSED ] 3 tests. -23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.01 sec +23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.02 sec test 24 Start 24: TopologyTest @@ -116964,7 +116993,7 @@ 24: [----------] Global test environment tear-down 24: [==========] 11 tests from 3 test cases ran. (0 ms total) 24: [ PASSED ] 11 tests. -24/30 Test #24: TopologyTest ..................... Passed 0.01 sec +24/30 Test #24: TopologyTest ..................... Passed 0.02 sec test 25 Start 25: PullTest @@ -116986,9 +117015,9 @@ 25: [----------] 5 tests from PullTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 5 tests from 1 test case ran. (1 ms total) +25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/30 Test #25: PullTest ......................... Passed 0.01 sec +25/30 Test #25: PullTest ......................... Passed 0.02 sec test 26 Start 26: AwhTest @@ -117018,12 +117047,12 @@ 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (2 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -117033,9 +117062,9 @@ 26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (4 ms total) +26: [==========] 12 tests from 4 test cases ran. (6 ms total) 26: [ PASSED ] 12 tests. -26/30 Test #26: AwhTest .......................... Passed 0.01 sec +26/30 Test #26: AwhTest .......................... Passed 0.02 sec test 27 Start 27: SimdUnitTests @@ -117062,7 +117091,7 @@ 27: [ OK ] SimdBootstrapTest.simd4LoadU (0 ms) 27: [ RUN ] SimdBootstrapTest.simd4StoreU 27: [ OK ] SimdBootstrapTest.simd4StoreU (0 ms) -27: [----------] 9 tests from SimdBootstrapTest (1 ms total) +27: [----------] 9 tests from SimdBootstrapTest (0 ms total) 27: 27: [----------] 1 test from SimdTest 27: [ RUN ] SimdTest.GmxAligned @@ -117210,61 +117239,61 @@ 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair -27: [ OK ] SimdMathTest.invsqrtPair (0 ms) +27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt 27: [ OK ] SimdMathTest.sqrt (1 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe 27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (3 ms) +27: [ OK ] SimdMathTest.inv (2 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt -27: [ OK ] SimdMathTest.cbrt (0 ms) +27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt 27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (0 ms) +27: [ OK ] SimdMathTest.log2 (1 ms) 27: [ RUN ] SimdMathTest.log 27: [ OK ] SimdMathTest.log (1 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (6 ms) +27: [ OK ] SimdMathTest.exp2 (1 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe 27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (6 ms) +27: [ OK ] SimdMathTest.exp (2 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (0 ms) +27: [ OK ] SimdMathTest.expUnsafe (1 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe -27: [ OK ] SimdMathTest.powUnsafe (1 ms) +27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (0 ms) +27: [ OK ] SimdMathTest.erf (1 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (1 ms) +27: [ OK ] SimdMathTest.erfc (2 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (1 ms) +27: [ OK ] SimdMathTest.sin (2 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (1 ms) +27: [ OK ] SimdMathTest.cos (2 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (1 ms) +27: [ OK ] SimdMathTest.tan (2 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (1 ms) +27: [ OK ] SimdMathTest.asin (2 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (1 ms) +27: [ OK ] SimdMathTest.acos (2 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (2 ms) 27: [ RUN ] SimdMathTest.atan2 -27: [ OK ] SimdMathTest.atan2 (0 ms) +27: [ OK ] SimdMathTest.atan2 (1 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection 27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe @@ -117272,21 +117301,21 @@ 27: [ RUN ] SimdMathTest.invSingleAccuracy 27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy -27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (6 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (7 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe @@ -117294,26 +117323,26 @@ 27: [ RUN ] SimdMathTest.erfSingleAccuracy 27: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy 27: [ OK ] SimdMathTest.tanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy -27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -27: [----------] 56 tests from SimdMathTest (58 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) +27: [----------] 56 tests from SimdMathTest (64 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -117336,16 +117365,16 @@ 27: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 27: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 27: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) -27: [----------] 3 tests from ArrayRefTest/1 (0 ms total) +27: [----------] 3 tests from ArrayRefTest/1 (1 ms total) 27: 27: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 27: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks -27: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (1 ms) +27: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 27: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 27: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 27: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 27: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) -27: [----------] 3 tests from ArrayRefTest/2 (1 ms total) +27: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 27: 27: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 27: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks @@ -117490,7 +117519,7 @@ 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose 27: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -27: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) +27: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 27: 27: [----------] 1 test from Simd4VectorOperationsTest 27: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -117686,9 +117715,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (1 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (61 ms total) +27: [==========] 288 tests from 22 test cases ran. (68 ms total) 27: [ PASSED ] 288 tests. -27/30 Test #27: SimdUnitTests .................... Passed 0.07 sec +27/30 Test #27: SimdUnitTests .................... Passed 0.09 sec test 28 Start 28: CompatibilityHelpersTests @@ -117886,7 +117915,7 @@ 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapDisengagnedWithEngaged (0 ms) 28: [ RUN ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged (0 ms) -28: [----------] 20 tests from OptionalIntValueTest (0 ms total) +28: [----------] 20 tests from OptionalIntValueTest (1 ms total) 28: 28: [----------] 1 test from NotNullConstruction 28: [ RUN ] NotNullConstruction.Works @@ -118003,7 +118032,7 @@ 28: [ RUN ] StringViewTest.CanSearchForCStringSubstringViaFindWithDefaultPos 28: [ OK ] StringViewTest.CanSearchForCStringSubstringViaFindWithDefaultPos (0 ms) 28: [ RUN ] StringViewTest.CanBackwardsSearchForViewSubstrViaFind -28: [ OK ] StringViewTest.CanBackwardsSearchForViewSubstrViaFind (1 ms) +28: [ OK ] StringViewTest.CanBackwardsSearchForViewSubstrViaFind (0 ms) 28: [ RUN ] StringViewTest.CanBackwardsSearchForCharacterViaFind 28: [ OK ] StringViewTest.CanBackwardsSearchForCharacterViaFind (0 ms) 28: [ RUN ] StringViewTest.CanBackwardsSearchForCStringSubstringViaFind @@ -118074,7 +118103,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (1 ms total) +28: [----------] 80 tests from StringViewTest (2 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -118090,9 +118119,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (2 ms total) +28: [==========] 170 tests from 12 test cases ran. (4 ms total) 28: [ PASSED ] 170 tests. -28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.01 sec +28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.03 sec test 29 Start 29: FileIOTests @@ -118102,10 +118131,10 @@ 29: [----------] Global test environment set-up. 29: [----------] 2 tests from FileMD5Test 29: [ RUN ] FileMD5Test.CanComputeMD5 -29: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) +29: [ OK ] FileMD5Test.CanComputeMD5 (2 ms) 29: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 29: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -29: [----------] 2 tests from FileMD5Test (1 ms total) +29: [----------] 2 tests from FileMD5Test (2 ms total) 29: 29: [----------] 3 tests from MrcSerializer 29: [ RUN ] MrcSerializer.DefaultHeaderValuesAreSet @@ -118118,14 +118147,14 @@ 29: 29: [----------] 4 tests from MrcDensityMap 29: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (0 ms) +29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (1 ms) 29: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent 29: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) 29: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile -29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (1 ms) +29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 29: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (0 ms) -29: [----------] 4 tests from MrcDensityMap (1 ms total) +29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) +29: [----------] 4 tests from MrcDensityMap (2 ms total) 29: 29: [----------] 8 tests from MrcDensityMapHeaderTest 29: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -118217,15 +118246,15 @@ 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) +29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 33 tests from 8 test cases ran. (6 ms total) +29: [==========] 33 tests from 8 test cases ran. (9 ms total) 29: [ PASSED ] 33 tests. -29/30 Test #29: FileIOTests ...................... Passed 0.02 sec +29/30 Test #29: FileIOTests ...................... Passed 0.03 sec test 30 Start 30: SelectionUnitTests @@ -118236,7 +118265,7 @@ 30: [----------] 1 test from IndexGroupTest 30: [ RUN ] IndexGroupTest.RemovesDuplicates 30: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms) -30: [----------] 1 test from IndexGroupTest (0 ms total) +30: [----------] 1 test from IndexGroupTest (1 ms total) 30: 30: [----------] 15 tests from IndexBlockTest 30: [ RUN ] IndexBlockTest.CreatesUnknownBlock @@ -118248,11 +118277,11 @@ 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology 30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology -30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) +30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (1 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology 30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesSingleBlock -30: [ OK ] IndexBlockTest.CreatesSingleBlock (1 ms) +30: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 30: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 30: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive @@ -118287,14 +118316,14 @@ 30: [ RUN ] IndexMapTest.InitializesMoleculeBlock 30: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsSingleBlock -30: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) +30: [ OK ] IndexMapTest.MapsSingleBlock (1 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocks 30: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 30: [ RUN ] IndexMapTest.HandlesMultipleRequests 30: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -30: [----------] 11 tests from IndexMapTest (2 ms total) +30: [----------] 11 tests from IndexMapTest (3 ms total) 30: 30: [----------] 3 tests from IndexGroupsAndNamesTest 30: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -118307,23 +118336,23 @@ 30: 30: [----------] 15 tests from NeighborhoodSearchTest 30: [ RUN ] NeighborhoodSearchTest.SimpleSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSearch (12 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearch (17 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (12 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (17 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchBox -30: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchBox (4 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (7 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (12 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (7 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (1 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (33 ms) +30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (56 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -118333,10 +118362,10 @@ 30: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 30: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -30: [----------] 15 tests from NeighborhoodSearchTest (78 ms total) +30: [----------] 15 tests from NeighborhoodSearchTest (125 ms total) 30: 30: [----------] 12 tests from PositionCalculationTest 30: [ RUN ] PositionCalculationTest.ComputesAtomPositions @@ -118346,7 +118375,7 @@ 30: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 30: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions -30: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) +30: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 30: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole @@ -118354,7 +118383,7 @@ 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionMask -30: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) +30: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 @@ -118363,23 +118392,23 @@ 30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) -30: [----------] 12 tests from PositionCalculationTest (2 ms total) +30: [----------] 12 tests from PositionCalculationTest (3 ms total) 30: 30: [----------] 29 tests from SelectionCollectionTest 30: [ RUN ] SelectionCollectionTest.HandlesNoSelections 30: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 30: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) +30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 30: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 @@ -118389,13 +118418,13 @@ 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference -30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup @@ -118403,11 +118432,11 @@ 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 30: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation @@ -118419,16 +118448,16 @@ 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -30: [----------] 29 tests from SelectionCollectionTest (6 ms total) +30: [----------] 29 tests from SelectionCollectionTest (10 ms total) 30: 30: [----------] 14 tests from SelectionCollectionInteractiveTest 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput @@ -118442,7 +118471,7 @@ 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline @@ -118452,16 +118481,16 @@ 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) -30: [----------] 14 tests from SelectionCollectionInteractiveTest (4 ms total) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) +30: [----------] 14 tests from SelectionCollectionInteractiveTest (6 ms total) 30: 30: [----------] 66 tests from SelectionCollectionDataTest 30: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 30: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResnr 30: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResIndex @@ -118469,31 +118498,31 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomname -30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesChain 30: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMass -30: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCharge 30: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc -30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy -30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBeta 30: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResname -30: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 30: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords @@ -118501,87 +118530,87 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (4 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (0 ms) +30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (0 ms) +30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 30: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames -30: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions -30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame -30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 30: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups @@ -118589,8 +118618,8 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -30: [----------] 66 tests from SelectionCollectionDataTest (35 ms total) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) +30: [----------] 66 tests from SelectionCollectionDataTest (50 ms total) 30: 30: [----------] 17 tests from SelectionOptionTest 30: [ RUN ] SelectionOptionTest.ParsesSimpleSelection @@ -118598,13 +118627,13 @@ 30: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 30: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired -30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) +30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) 30: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 30: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptySelections -30: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms) +30: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections -30: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) +30: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooManySelections 30: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewSelections @@ -118614,20 +118643,20 @@ 30: [ RUN ] SelectionOptionTest.HandlesAdjuster 30: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) +30: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms) +30: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 30: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections -30: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) +30: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -30: [----------] 17 tests from SelectionOptionTest (2 ms total) +30: [----------] 17 tests from SelectionOptionTest (4 ms total) 30: 30: [----------] 9 tests from SelectionFileOptionTest 30: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile @@ -118641,31 +118670,31 @@ 30: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -30: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) +30: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 30: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) 30: [----------] 9 tests from SelectionFileOptionTest (2 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 192 tests from 11 test cases ran. (132 ms total) +30: [==========] 192 tests from 11 test cases ran. (206 ms total) 30: [ PASSED ] 192 tests. -30/30 Test #30: SelectionUnitTests ............... Passed 0.15 sec +30/30 Test #30: SelectionUnitTests ............... Passed 0.23 sec 100% tests passed, 0 tests failed out of 30 Label Time Summary: -GTest = 1.16 sec*proc (30 tests) -MpiTest = 0.08 sec*proc (3 tests) -UnitTest = 1.16 sec*proc (30 tests) +GTest = 1.82 sec*proc (30 tests) +MpiTest = 0.10 sec*proc (3 tests) +UnitTest = 1.82 sec*proc (30 tests) -Total Test time (real) = 1.20 sec +Total Test time (real) = 1.87 sec touch build-mpich dh_testdir -/usr/bin/make -j16 -C build/openmpi +/usr/bin/make -j7 -C build/openmpi make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi//CMakeFiles/progress.marks @@ -118678,122 +118707,122 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -Scanning dependencies of target lmfit_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp Scanning dependencies of target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target scanner -Scanning dependencies of target linearalgebra /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +Scanning dependencies of target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +Scanning dependencies of target linearalgebra make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops 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-I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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-Scanning dependencies of target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -Scanning dependencies of target tng_io_obj +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c [ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 1%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o 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-DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o 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Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src 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-DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. 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/build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 2%] Built target scanner cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 2%] Built target linearalgebra cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 2%] Built target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 2%] Built target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 2%] Built target scanner -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 5%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 8%] Built target modularsimulator @@ -119194,6 +119223,10 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/groupcoord.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/lincs.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/md_support.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdatoms.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdebin_bar.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdoutf.cpp @@ -119202,10 +119235,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qmmm.cpp @@ -119256,15 +119285,15 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_load_balancing.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp @@ -119410,7 +119439,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -j16 -C build/openmpi-dp +/usr/bin/make -j7 -C build/openmpi-dp make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi-dp//CMakeFiles/progress.marks @@ -119423,7 +119452,6 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' @@ -119431,113 +119459,114 @@ make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -Scanning dependencies of target lmfit_objlib /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp Scanning dependencies of target thread_mpi +Scanning dependencies of target scanner +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' Scanning dependencies of target linearalgebra -Scanning dependencies of target scanner /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -Scanning dependencies of target mdrun_objlib Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target modularsimulator -[ 0%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp 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/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops 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/build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c [ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 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/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 2%] Built target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 2%] Built target linearalgebra cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 2%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' [ 2%] Built target scanner +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' [ 5%] Built target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' @@ -119938,6 +119967,10 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/groupcoord.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/lincs.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/md_support.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdatoms.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdebin_bar.cpp @@ -119947,10 +119980,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qmmm.cpp @@ -120002,15 +120031,15 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program_impl.cpp @@ -120160,7 +120189,7 @@ > debian/gromacs-openmpi.README.Debian # rsh_agent: https://bugs.debian.org/494046 # oversubscribe: https://bugs.debian.org/850229#51 -/usr/bin/make -j16 -C build/openmpi tests +/usr/bin/make -j7 -C build/openmpi tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -120174,69 +120203,69 @@ /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 0%] Built target linearalgebra [ 0%] Built target scanner -[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend [ 1%] Built target thread_mpi +[ 1%] Built target linearalgebra +[ 1%] Built target lmfit_objlib [ 3%] Built target tng_io_obj +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= [ 5%] Built target modularsimulator [ 5%] Built target release-version-info -Scanning dependencies of target gtest /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +Scanning dependencies of target gtest make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' @@ -120311,139 +120340,233 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +Scanning dependencies of target utility-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +Scanning dependencies of target testutils-mpi-test +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +Scanning dependencies of target testutils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target applied_forces-test +Scanning dependencies of target selection-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +Scanning dependencies of target utility-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../lib/libgtest.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 76%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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-isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -Scanning dependencies of target onlinehelp-test-shared -Scanning dependencies of target utility-mpi-test -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +[ 77%] Built target testutils-mpi-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem 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directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -Scanning dependencies of target hardware-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +[ 77%] Built target domdec-test +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target fft-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target gpu_utils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../lib/libgtest.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target applied_forces-test +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +Scanning dependencies of target hardware-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target testutils-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target testutils-test +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -Scanning dependencies of target domdec-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +Scanning dependencies of target math-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +[ 77%] Built target hardware-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -Scanning dependencies of target applied_forces-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +[ 78%] Built target mdrunutility-test-shared +/usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -Scanning dependencies of target ewald-test -Scanning dependencies of target selection-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdspan-test -/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp -Scanning dependencies of target math-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd 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CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build +[ 78%] Built target gpu_utils-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -Scanning dependencies of target utility-test -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 77%] Built target testutils-mpi-test +[ 79%] Built target ewald-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -120452,8 +120575,17 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 77%] Built target utility-mpi-test +[ 80%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= @@ -120462,16 +120594,19 @@ /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 77%] Built target onlinehelp-test-shared +[ 80%] Built target mdspan-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -120480,14 +120615,9 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target mdrunutility-test-shared +[ 81%] Built target selection-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -120496,23 +120626,11 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -[ 78%] Built target hardware-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target fft-test +[ 81%] Built target pbcutil-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -120521,9 +120639,13 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target pbcutil-test +[ 81%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -120532,24 +120654,34 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -cd 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../../../../lib/libgtest.a -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target restraintpotential-test +[ 83%] Built target mdlib-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' Scanning dependencies of target topology-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -[ 78%] Built target domdec-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 84%] Built target taskassignment-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -120558,17 +120690,19 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 79%] Built target pull-test +[ 85%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -120577,23 +120711,14 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 80%] Built target taskassignment-test +[ 85%] Built target table-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -120602,23 +120727,23 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 86%] Built target topology-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 80%] Built target testutils-test +[ 87%] Built target awh-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -120627,8 +120752,14 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 81%] Built target topology-test +[ 88%] Built target random-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -120637,44 +120768,44 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 81%] Built target applied_forces-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 81%] Built target mdspan-test +[ 90%] Built target math-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 81%] Built target table-test +[ 91%] Built target options-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -120683,168 +120814,66 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 81%] Built target gpu_utils-test +[ 91%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target ewald-test -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp -Scanning dependencies of target onlinehelp-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 83%] Built target random-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 84%] Built target awh-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 84%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 84%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 85%] Built target onlinehelp-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 90%] Built target commandline-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +[ 92%] Built target fileio-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 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CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 91%] Built target compat-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +[ 93%] Built target compat-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 93%] Built target mdlib-test +[ 95%] Built target simd-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 94%] Built target selection-test +[ 95%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 97%] Built target utility-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +[ 98%] Built target utility-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libhwloc.so -lrt /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lm /usr/lib/gcc/i686-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[100%] Built target math-test +[100%] Built target commandline-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -120893,22 +120922,22 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (2 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData -1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData @@ -120920,13 +120949,13 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (2 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound @@ -120940,9 +120969,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -120950,30 +120979,30 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (8 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (7 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -121005,19 +121034,19 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (0 ms) +1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (1 ms) +1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [ OK ] XvgTests.ReadIncorrect (1 ms) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (11 ms total) +1: [==========] 59 tests from 5 test cases ran. (12 ms total) 1: [ PASSED ] 59 tests. - 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.73 sec + 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.44 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -121033,7 +121062,7 @@ 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (0 ms total) 2: [ PASSED ] 1 test. - 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.27 sec + 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.35 sec test 3 Start 3: UtilityUnitTests @@ -121043,7 +121072,7 @@ 3: [----------] Global test environment set-up. 3: [----------] 5 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment -3: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment @@ -121052,20 +121081,20 @@ 3: [ OK ] AllocatorTest/0.Move (0 ms) 3: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/0 (0 ms total) +3: [----------] 5 tests from AllocatorTest/0 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.Move 3: [ OK ] AllocatorTest/1.Move (0 ms) 3: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/1 (1 ms total) +3: [----------] 5 tests from AllocatorTest/1 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -121110,14 +121139,14 @@ 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.Move 3: [ OK ] AllocatorTest/5.Move (0 ms) 3: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/5 (0 ms total) +3: [----------] 5 tests from AllocatorTest/5 (1 ms total) 3: 3: [----------] 1 test from AllocatorUntypedTest 3: [ RUN ] AllocatorUntypedTest.Comparison @@ -121552,7 +121581,7 @@ 3: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/19 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/19 (1 ms total) 3: 3: [----------] 2 tests from CStringUtilityTest 3: [ RUN ] CStringUtilityTest.CaseInsensitiveComparison @@ -121617,18 +121646,18 @@ 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.SimpleObject -3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (1 ms) +3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) +3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms 3: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive -3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (1 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString @@ -121637,7 +121666,7 @@ 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (0 ms total) +3: [----------] 6 tests from TreeValueTransformTest (1 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -121646,20 +121675,20 @@ 3: 3: [----------] 7 tests from LoggerTest 3: [ RUN ] LoggerTest.EmptyLoggerWorks -3: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) +3: [ OK ] LoggerTest.EmptyLoggerWorks (1 ms) 3: [ RUN ] LoggerTest.LogsToStream 3: [ OK ] LoggerTest.LogsToStream (0 ms) 3: [ RUN ] LoggerTest.LogsToFile -3: [ OK ] LoggerTest.LogsToFile (1 ms) +3: [ OK ] LoggerTest.LogsToFile (0 ms) 3: [ RUN ] LoggerTest.LevelFilteringWorks 3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams 3: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleFiles -3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) +3: [ OK ] LoggerTest.LogsToMultipleFiles (1 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (1 ms total) +3: [----------] 7 tests from LoggerTest (2 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -121679,14 +121708,14 @@ 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (1 ms total) +3: [----------] 3 tests from MutexTaskTest (0 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (0 ms) -3: [----------] 2 tests from PathTest (0 ms total) +3: [ OK ] PathTest.SearchOperationsWork (1 ms) +3: [----------] 2 tests from PathTest (1 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -121773,7 +121802,7 @@ 3: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace -3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (1 ms) +3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 3: [----------] 10 tests from TextLineWrapperTest (1 ms total) 3: 3: [----------] 6 tests from TextWriterTest @@ -121863,7 +121892,7 @@ 3: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 3: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 3: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) +3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 @@ -121888,9 +121917,9 @@ 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (1 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 @@ -121904,9 +121933,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (7 ms total) +3: [==========] 347 tests from 56 test cases ran. (11 ms total) 3: [ PASSED ] 347 tests. - 3/30 Test #3: UtilityUnitTests ................. Passed 0.27 sec + 3/30 Test #3: UtilityUnitTests ................. Passed 0.30 sec test 4 Start 4: UtilityMpiUnitTests @@ -121916,7 +121945,7 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier 4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) 4: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) @@ -121924,7 +121953,7 @@ 4: [----------] Global test environment tear-down 4: [==========] 2 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 2 tests. - 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.28 sec + 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.36 sec test 5 Start 5: MdlibUnitTest @@ -121939,9 +121968,9 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (1 ms) +5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages -5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) +5: [ OK ] PrEbinTest.HandlesEmptyAverages (1 ms) 5: [----------] 2 tests from PrEbinTest (1 ms total) 5: 5: [----------] 4 tests from ShakeTest @@ -122001,7 +122030,7 @@ 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs 5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -5: [----------] 1 test from UpdateGroupsCog (0 ms total) +5: [----------] 1 test from UpdateGroupsCog (1 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 @@ -122093,13 +122122,13 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/3 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/3 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/4 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/4 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/4 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/6 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/6 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/7 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/7 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/7 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/8 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/9 @@ -122147,7 +122176,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/12 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/12 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/13 @@ -122172,7 +122201,7 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (2 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (3 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 @@ -122183,31 +122212,31 @@ 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (5 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (7 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (20 ms total) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (27 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -122225,7 +122254,7 @@ 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 (0 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 (1 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/0 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/0 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/1 @@ -122258,7 +122287,7 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (0 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -122297,38 +122326,38 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/1 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (3 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (14 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (2 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (20 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 @@ -122338,27 +122367,27 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (6 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (8 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (43 ms total) +5: [==========] 187 tests from 13 test cases ran. (61 ms total) 5: [ PASSED ] 187 tests. - 5/30 Test #5: MdlibUnitTest .................... Passed 0.30 sec + 5/30 Test #5: MdlibUnitTest .................... Passed 0.35 sec test 6 Start 6: AppliedForcesUnitTest @@ -122370,8 +122399,8 @@ 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows 6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (1 ms) -6: [----------] 2 tests from DensityFittingTest (1 ms total) +6: [ OK ] DensityFittingTest.SingleAtom (0 ms) +6: [----------] 2 tests from DensityFittingTest (0 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters @@ -122381,7 +122410,7 @@ 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive -6: [ OK ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive (0 ms) +6: [ OK ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive (1 ms) 6: [ RUN ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup 6: [ OK ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup (0 ms) 6: [ RUN ] DensityFittingOptionsTest.InternalsToKvt @@ -122390,7 +122419,7 @@ 6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) -6: [----------] 8 tests from DensityFittingOptionsTest (0 ms total) +6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest 6: [ RUN ] DensityFittingAmplitudeLookupTest.Unity @@ -122421,7 +122450,7 @@ 6: [----------] Global test environment tear-down 6: [==========] 20 tests from 4 test cases ran. (1 ms total) 6: [ PASSED ] 20 tests. - 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.26 sec + 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.28 sec test 7 Start 7: CommandLineUnitTests @@ -122433,14 +122462,14 @@ 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) +7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) 7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions @@ -122450,10 +122479,10 @@ 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText -7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues 7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (1 ms total) +7: [----------] 7 tests from CommandLineHelpWriterTest (2 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -122463,12 +122492,12 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -122509,10 +122538,10 @@ 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink -7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -7: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) +7: [----------] 6 tests from CommandLineProgramContextTest (2 ms total) 7: 7: [----------] 3 tests from OutputNamesTest 7: [ RUN ] OutputNamesTest.CanBeSuffixed @@ -122539,7 +122568,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 7: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit -7: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (1 ms) +7: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 7: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgs @@ -122557,21 +122586,21 @@ 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) +7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (3 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (6 ms total) +7: [==========] 59 tests from 7 test cases ran. (8 ms total) 7: [ PASSED ] 59 tests. - 7/30 Test #7: CommandLineUnitTests ............. Passed 0.27 sec + 7/30 Test #7: CommandLineUnitTests ............. Passed 0.29 sec test 8 Start 8: DomDecTests @@ -122594,7 +122623,7 @@ 8: [ OK ] HashedMap.LinkedEntries (0 ms) 8: [ RUN ] HashedMap.ResizesTable 8: [ OK ] HashedMap.ResizesTable (0 ms) -8: [----------] 7 tests from HashedMap (0 ms total) +8: [----------] 7 tests from HashedMap (1 ms total) 8: 8: [----------] 2 tests from LocalAtomSetManager 8: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -122604,9 +122633,9 @@ 8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (0 ms total) +8: [==========] 9 tests from 2 test cases ran. (1 ms total) 8: [ PASSED ] 9 tests. - 8/30 Test #8: DomDecTests ...................... Passed 0.25 sec + 8/30 Test #8: DomDecTests ...................... Passed 0.28 sec test 9 Start 9: EwaldUnitTests @@ -122616,93 +122645,93 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (7 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (41 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (65 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 @@ -122714,57 +122743,57 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 @@ -122778,75 +122807,75 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 @@ -122858,13 +122887,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 @@ -122876,19 +122905,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 @@ -122896,19 +122925,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 @@ -122920,13 +122949,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 @@ -122938,60 +122967,60 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (33 ms total) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) +9: [----------] 144 tests from SaneInput/PmeGatherTest (47 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 @@ -122999,14 +123028,14 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (12 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (19 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 @@ -123014,37 +123043,37 @@ 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (4 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (6 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (7 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (11 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 @@ -123052,67 +123081,67 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (11 ms total) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (16 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (12 ms total) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (18 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 @@ -123122,46 +123151,46 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (14 ms total) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (20 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (38 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (54 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (195 ms total) +9: [==========] 257 tests from 10 test cases ran. (271 ms total) 9: [ PASSED ] 257 tests. - 9/30 Test #9: EwaldUnitTests ................... Passed 0.48 sec + 9/30 Test #9: EwaldUnitTests ................... Passed 0.58 sec test 10 Start 10: FFTUnitTests @@ -123171,48 +123200,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (20 ms) -10: [----------] 2 tests from ManyFFTTest (27 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (29 ms) +10: [----------] 2 tests from ManyFFTTest (39 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (6 ms) -10: [----------] 1 test from FFTTest (6 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (8 ms) +10: [----------] 1 test from FFTTest (8 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (3 ms) +10: [----------] 1 test from FFFTest3D (3 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (4 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (11 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (16 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (16 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (36 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (24 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (53 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (71 ms total) +10: [==========] 14 tests from 4 test cases ran. (103 ms total) 10: [ PASSED ] 14 tests. -10/30 Test #10: FFTUnitTests ..................... Passed 0.33 sec +10/30 Test #10: FFTUnitTests ..................... Passed 0.39 sec test 11 Start 11: GpuUtilsUnitTests @@ -123225,7 +123254,7 @@ 11: [ OK ] ClfftInitializer.SingleInitializationWorks (0 ms) 11: [ RUN ] ClfftInitializer.TwoInitializationsWork 11: [ OK ] ClfftInitializer.TwoInitializationsWork (0 ms) -11: [----------] 2 tests from ClfftInitializer (0 ms total) +11: [----------] 2 tests from ClfftInitializer (1 ms total) 11: 11: [----------] 2 tests from HostAllocatorTest/0, where TypeParam = int 11: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks @@ -123405,9 +123434,9 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (1 ms total) +11: [==========] 62 tests from 20 test cases ran. (2 ms total) 11: [ PASSED ] 62 tests. -11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.26 sec +11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.28 sec test 12 Start 12: HardwareUnitTests @@ -123417,17 +123446,17 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (14 ms) +12: [ OK ] HardwareTopologyTest.Execute (10 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (16 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (10 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (16 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (10 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (16 ms) -12: [----------] 4 tests from HardwareTopologyTest (62 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (9 ms) +12: [----------] 4 tests from HardwareTopologyTest (39 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (62 ms total) +12: [==========] 4 tests from 1 test case ran. (39 ms total) 12: [ PASSED ] 4 tests. 12/30 Test #12: HardwareUnitTests ................ Passed 0.32 sec test 13 @@ -123470,7 +123499,7 @@ 13: 13: [----------] 8 tests from TranslateAndScaleTest 13: [ RUN ] TranslateAndScaleTest.identityTransformation -13: [ OK ] TranslateAndScaleTest.identityTransformation (1 ms) +13: [ OK ] TranslateAndScaleTest.identityTransformation (0 ms) 13: [ RUN ] TranslateAndScaleTest.translationWithIdentityScaling 13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingWithZeroTranslation @@ -123485,13 +123514,13 @@ 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect 13: [ OK ] DensitySimilarityTest.InnerProductIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.InnerProductGradientIsCorrect -13: [ OK ] DensitySimilarityTest.InnerProductGradientIsCorrect (0 ms) +13: [ OK ] DensitySimilarityTest.InnerProductGradientIsCorrect (1 ms) 13: [ RUN ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch 13: [ OK ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch (0 ms) 13: [ RUN ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch @@ -123505,14 +123534,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (16 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (41 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (13 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (42 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (16 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (25 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (45 ms total) +13: [----------] 12 tests from DensitySimilarityTest (109 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -123531,7 +123560,7 @@ 13: 13: [----------] 8 tests from ExponentialMovingAverage 13: [ RUN ] ExponentialMovingAverage.ThrowsWhenLagTimeIsZero -13: [ OK ] ExponentialMovingAverage.ThrowsWhenLagTimeIsZero (1 ms) +13: [ OK ] ExponentialMovingAverage.ThrowsWhenLagTimeIsZero (0 ms) 13: [ RUN ] ExponentialMovingAverage.ThrowsWhenLagTimeIsNegative 13: [ OK ] ExponentialMovingAverage.ThrowsWhenLagTimeIsNegative (0 ms) 13: [ RUN ] ExponentialMovingAverage.LagTimeOneYieldsInstantaneousValue @@ -123546,13 +123575,13 @@ 13: [ OK ] ExponentialMovingAverage.InverseLagTimeCorrect (0 ms) 13: [ RUN ] ExponentialMovingAverage.RoundTripAsKeyValueTree 13: [ OK ] ExponentialMovingAverage.RoundTripAsKeyValueTree (0 ms) -13: [----------] 8 tests from ExponentialMovingAverage (1 ms total) +13: [----------] 8 tests from ExponentialMovingAverage (0 ms total) 13: 13: [----------] 21 tests from FunctionTest 13: [ RUN ] FunctionTest.StaticLog2 13: [ OK ] FunctionTest.StaticLog2 (0 ms) 13: [ RUN ] FunctionTest.Log2I32Bit -13: [ OK ] FunctionTest.Log2I32Bit (0 ms) +13: [ OK ] FunctionTest.Log2I32Bit (1 ms) 13: [ RUN ] FunctionTest.Log2I64Bit 13: [ OK ] FunctionTest.Log2I64Bit (0 ms) 13: [ RUN ] FunctionTest.GreatestCommonDivisor @@ -123572,7 +123601,7 @@ 13: [ RUN ] FunctionTest.SixthrootFloat 13: [ OK ] FunctionTest.SixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.SixthrootDouble -13: [ OK ] FunctionTest.SixthrootDouble (0 ms) +13: [ OK ] FunctionTest.SixthrootDouble (1 ms) 13: [ RUN ] FunctionTest.SixthrootInteger 13: [ OK ] FunctionTest.SixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootFloat @@ -123584,14 +123613,14 @@ 13: [ RUN ] FunctionTest.Powers 13: [ OK ] FunctionTest.Powers (0 ms) 13: [ RUN ] FunctionTest.ErfInvFloat -13: [ OK ] FunctionTest.ErfInvFloat (1 ms) +13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble 13: [ OK ] FunctionTest.ErfInvDouble (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (1 ms total) +13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) +13: [----------] 21 tests from FunctionTest (3 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -123679,7 +123708,7 @@ 13: [ OK ] MatrixTest.canCreateFromLegacyMatrix (0 ms) 13: [ RUN ] MatrixTest.canFillLegacyMatrix 13: [ OK ] MatrixTest.canFillLegacyMatrix (0 ms) -13: [----------] 15 tests from MatrixTest (0 ms total) +13: [----------] 15 tests from MatrixTest (1 ms total) 13: 13: [----------] 25 tests from MultiDimArrayTest 13: [ RUN ] MultiDimArrayTest.canConstructAndFillStatic @@ -123732,7 +123761,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (1 ms total) +13: [----------] 25 tests from MultiDimArrayTest (0 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -123933,9 +123962,9 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (49 ms total) +13: [==========] 204 tests from 29 test cases ran. (114 ms total) 13: [ PASSED ] 204 tests. -13/30 Test #13: MathUnitTests .................... Passed 0.31 sec +13/30 Test #13: MathUnitTests .................... Passed 0.40 sec test 14 Start 14: MdrunUtilityUnitTests @@ -123949,7 +123978,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 14: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads @@ -123959,11 +123988,11 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced @@ -123979,13 +124008,13 @@ 14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -14: [----------] 17 tests from ThreadAffinityTest (2 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) +14: [----------] 17 tests from ThreadAffinityTest (4 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (2 ms total) +14: [==========] 17 tests from 1 test case ran. (4 ms total) 14: [ PASSED ] 17 tests. -14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.26 sec +14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.28 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -123995,9 +124024,9 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (0 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled @@ -124005,30 +124034,30 @@ 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (1 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (5 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (2 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (5 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (3 ms total) +15: [==========] 13 tests from 2 test cases ran. (10 ms total) 15: [ PASSED ] 13 tests. -15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.29 sec +15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.36 sec test 16 Start 16: MDSpanTests @@ -124124,7 +124153,7 @@ 16: [----------] Global test environment tear-down 16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/30 Test #16: MDSpanTests ...................... Passed 0.26 sec +16/30 Test #16: MDSpanTests ...................... Passed 0.28 sec test 17 Start 17: OnlineHelpUnitTests @@ -124145,7 +124174,7 @@ 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (1 ms total) +17: [----------] 6 tests from TextTableFormatterTest (0 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -124154,7 +124183,7 @@ 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics 17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -17: [----------] 3 tests from HelpManagerTest (0 ms total) +17: [----------] 3 tests from HelpManagerTest (1 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -124175,11 +124204,11 @@ 17: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 17: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation -17: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsBulletList 17: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList -17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable @@ -124191,7 +124220,7 @@ 17: [----------] Global test environment tear-down 17: [==========] 22 tests from 4 test cases ran. (2 ms total) 17: [ PASSED ] 22 tests. -17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.27 sec +17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.28 sec test 18 Start 18: OptionsUnitTests @@ -124281,14 +124310,14 @@ 18: [ RUN ] OptionsAssignerTest.HandlesMissingValue 18: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesExtraValue -18: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) +18: [ OK ] OptionsAssignerTest.HandlesExtraValue (1 ms) 18: [ RUN ] OptionsAssignerTest.HandlesGroups 18: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesSections 18: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 18: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -18: [----------] 9 tests from OptionsAssignerTest (0 ms total) +18: [----------] 9 tests from OptionsAssignerTest (1 ms total) 18: 18: [----------] 4 tests from OptionsAssignerBooleanTest 18: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -124362,7 +124391,7 @@ 18: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 18: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 18: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -18: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) +18: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 18: 18: [----------] 6 tests from OptionsAssignerEnumTest 18: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -124456,11 +124485,11 @@ 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption -18: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 18: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsInt64Option -18: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsStringOption 18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption @@ -124474,9 +124503,9 @@ 18: [----------] 8 tests from TreeValueSupportTest (1 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (3 ms total) +18: [==========] 110 tests from 18 test cases ran. (4 ms total) 18: [ PASSED ] 110 tests. -18/30 Test #18: OptionsUnitTests ................. Passed 0.26 sec +18/30 Test #18: OptionsUnitTests ................. Passed 0.28 sec test 19 Start 19: PbcutilUnitTest @@ -124486,8 +124515,8 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) -19: [----------] 1 test from PbcTest (1 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (0 ms) +19: [----------] 1 test from PbcTest (0 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect @@ -124497,9 +124526,9 @@ 19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 3 tests from 2 test cases ran. (1 ms total) +19: [==========] 3 tests from 2 test cases ran. (0 ms total) 19: [ PASSED ] 3 tests. -19/30 Test #19: PbcutilUnitTest .................. Passed 0.26 sec +19/30 Test #19: PbcutilUnitTest .................. Passed 0.28 sec test 20 Start 20: RandomUnitTests @@ -124509,14 +124538,14 @@ 20: [----------] Global test environment set-up. 20: [----------] 4 tests from ExponentialDistributionTest 20: [ RUN ] ExponentialDistributionTest.Output -20: [ OK ] ExponentialDistributionTest.Output (1 ms) +20: [ OK ] ExponentialDistributionTest.Output (0 ms) 20: [ RUN ] ExponentialDistributionTest.Logical 20: [ OK ] ExponentialDistributionTest.Logical (0 ms) 20: [ RUN ] ExponentialDistributionTest.Reset 20: [ OK ] ExponentialDistributionTest.Reset (0 ms) 20: [ RUN ] ExponentialDistributionTest.AltParam 20: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from ExponentialDistributionTest (1 ms total) +20: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output @@ -124527,7 +124556,7 @@ 20: [ OK ] GammaDistributionTest.Reset (0 ms) 20: [ RUN ] GammaDistributionTest.AltParam 20: [ OK ] GammaDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from GammaDistributionTest (0 ms total) +20: [----------] 4 tests from GammaDistributionTest (1 ms total) 20: 20: [----------] 4 tests from NormalDistributionTest 20: [ RUN ] NormalDistributionTest.Output @@ -124562,8 +124591,8 @@ 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -124595,14 +124624,14 @@ 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical 20: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Output -20: [ OK ] UniformRealDistributionTest.Output (0 ms) +20: [ OK ] UniformRealDistributionTest.Output (1 ms) 20: [ RUN ] UniformRealDistributionTest.Logical 20: [ OK ] UniformRealDistributionTest.Logical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Reset 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -124618,17 +124647,17 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (4 ms total) +20: [==========] 44 tests from 10 test cases ran. (5 ms total) 20: [ PASSED ] 44 tests. -20/30 Test #20: RandomUnitTests .................. Passed 0.27 sec +20/30 Test #20: RandomUnitTests .................. Passed 0.30 sec test 21 Start 21: RestraintTests @@ -124642,9 +124671,9 @@ 21: [----------] 1 test from RestraintManager (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 1 test from 1 test case ran. (0 ms total) +21: [==========] 1 test from 1 test case ran. (1 ms total) 21: [ PASSED ] 1 test. -21/30 Test #21: RestraintTests ................... Passed 0.26 sec +21/30 Test #21: RestraintTests ................... Passed 0.28 sec test 22 Start 22: TableUnitTests @@ -124656,52 +124685,52 @@ 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (0 ms) +22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (9 ms) +22: [ OK ] SplineTableTest/0.LJ12 (14 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (3 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (17 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (27 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (19 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (32 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (4 ms) +22: [ OK ] SplineTableTest/0.Simd (6 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (16 ms) -22: [----------] 10 tests from SplineTableTest/0 (70 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (26 ms) +22: [----------] 10 tests from SplineTableTest/0 (113 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (0 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc 22: [ OK ] SplineTableTest/1.Sinc (1 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (1 ms) +22: [ OK ] SplineTableTest/1.LJ12 (2 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (3 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (2 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.Simd 22: [ OK ] SplineTableTest/1.Simd (1 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (2 ms) -22: [----------] 10 tests from SplineTableTest/1 (13 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (4 ms) +22: [----------] 10 tests from SplineTableTest/1 (22 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (84 ms total) +22: [==========] 20 tests from 2 test cases ran. (135 ms total) 22: [ PASSED ] 20 tests. -22/30 Test #22: TableUnitTests ................... Passed 0.34 sec +22/30 Test #22: TableUnitTests ................... Passed 0.42 sec test 23 Start 23: TaskAssignmentUnitTests @@ -124718,13 +124747,13 @@ 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow -23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (0 ms) -23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (0 ms total) +23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (1 ms) +23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (1 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 3 tests from 2 test cases ran. (0 ms total) +23: [==========] 3 tests from 2 test cases ran. (1 ms total) 23: [ PASSED ] 3 tests. -23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.26 sec +23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.28 sec test 24 Start 24: TopologyTest @@ -124761,12 +124790,12 @@ 24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable 24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (0 ms total) +24: [----------] 6 tests from SymtabTest (1 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (0 ms total) +24: [==========] 11 tests from 3 test cases ran. (1 ms total) 24: [ PASSED ] 11 tests. -24/30 Test #24: TopologyTest ..................... Passed 0.26 sec +24/30 Test #24: TopologyTest ..................... Passed 0.28 sec test 25 Start 25: PullTest @@ -124790,7 +124819,7 @@ 25: [----------] Global test environment tear-down 25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/30 Test #25: PullTest ......................... Passed 0.25 sec +25/30 Test #25: PullTest ......................... Passed 0.28 sec test 26 Start 26: AwhTest @@ -124800,8 +124829,8 @@ 26: [----------] Global test environment set-up. 26: [----------] 1 test from BiasTest 26: [ RUN ] BiasTest.DetectsCovering -26: [ OK ] BiasTest.DetectsCovering (0 ms) -26: [----------] 1 test from BiasTest (0 ms total) +26: [ OK ] BiasTest.DetectsCovering (1 ms) +26: [----------] 1 test from BiasTest (1 ms total) 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood @@ -124810,7 +124839,7 @@ 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 @@ -124835,9 +124864,9 @@ 26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (5 ms total) +26: [==========] 12 tests from 4 test cases ran. (6 ms total) 26: [ PASSED ] 12 tests. -26/30 Test #26: AwhTest .......................... Passed 0.26 sec +26/30 Test #26: AwhTest .......................... Passed 0.28 sec test 27 Start 27: SimdUnitTests @@ -124991,7 +125020,7 @@ 27: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 27: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) -27: [----------] 16 tests from SimdFloatingpointUtilTest (1 ms total) +27: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) 27: 27: [----------] 3 tests from SimdVectorOperationsTest 27: [ RUN ] SimdVectorOperationsTest.iprod @@ -125004,7 +125033,7 @@ 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsFloat -27: [ OK ] SimdMathTest.generateTestPointsFloat (0 ms) +27: [ OK ] SimdMathTest.generateTestPointsFloat (1 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt @@ -125018,75 +125047,75 @@ 27: [ RUN ] SimdMathTest.sqrtUnsafe 27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (2 ms) +27: [ OK ] SimdMathTest.inv (1 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt -27: [ OK ] SimdMathTest.cbrt (0 ms) +27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (1 ms) +27: [ OK ] SimdMathTest.invcbrt (2 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (1 ms) +27: [ OK ] SimdMathTest.log2 (0 ms) 27: [ RUN ] SimdMathTest.log -27: [ OK ] SimdMathTest.log (0 ms) +27: [ OK ] SimdMathTest.log (1 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (7 ms) +27: [ OK ] SimdMathTest.exp2 (2 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe -27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) +27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (6 ms) +27: [ OK ] SimdMathTest.exp (1 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (1 ms) +27: [ OK ] SimdMathTest.expUnsafe (0 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (0 ms) +27: [ OK ] SimdMathTest.erf (2 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (1 ms) +27: [ OK ] SimdMathTest.erfc (2 ms) 27: [ RUN ] SimdMathTest.sin 27: [ OK ] SimdMathTest.sin (1 ms) 27: [ RUN ] SimdMathTest.cos 27: [ OK ] SimdMathTest.cos (1 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (1 ms) +27: [ OK ] SimdMathTest.tan (2 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (1 ms) +27: [ OK ] SimdMathTest.asin (2 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (1 ms) +27: [ OK ] SimdMathTest.acos (2 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (2 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection 27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (3 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy 27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy 27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (6 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (6 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy @@ -125094,28 +125123,28 @@ 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.powSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erfSingleAccuracy -27: [ OK ] SimdMathTest.erfSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy 27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy -27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.acosSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (58 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) +27: [----------] 56 tests from SimdMathTest (65 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -125292,7 +125321,7 @@ 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose 27: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -27: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) +27: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 27: 27: [----------] 1 test from Simd4VectorOperationsTest 27: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -125485,12 +125514,12 @@ 27: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 27: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -27: [----------] 37 tests from SimdScalarMathTest (1 ms total) +27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (60 ms total) +27: [==========] 288 tests from 22 test cases ran. (66 ms total) 27: [ PASSED ] 288 tests. -27/30 Test #27: SimdUnitTests .................... Passed 0.32 sec +27/30 Test #27: SimdUnitTests .................... Passed 0.35 sec test 28 Start 28: CompatibilityHelpersTests @@ -125564,7 +125593,7 @@ 28: [ RUN ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting 28: [ OK ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyAssignFromLiteral -28: [ OK ] OptionalTest.CanCopyAssignFromLiteral (0 ms) +28: [ OK ] OptionalTest.CanCopyAssignFromLiteral (1 ms) 28: [ RUN ] OptionalTest.CanCopyAssignFromValue 28: [ OK ] OptionalTest.CanCopyAssignFromValue (0 ms) 28: [ RUN ] OptionalTest.CanMoveAssignFromValue @@ -125606,7 +125635,7 @@ 28: sizeof( optional ): 16 (12) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (0 ms total) +28: [----------] 45 tests from OptionalTest (1 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -125623,7 +125652,7 @@ 28: [ OK ] MakeOptionalTest.CanInPlaceCopyConstructFromInitializerListAndArguments (0 ms) 28: [ RUN ] MakeOptionalTest.CanInPlaceMoveConstructFromInitializerListAndArguments 28: [ OK ] MakeOptionalTest.CanInPlaceMoveConstructFromInitializerListAndArguments (0 ms) -28: [----------] 7 tests from MakeOptionalTest (1 ms total) +28: [----------] 7 tests from MakeOptionalTest (0 ms total) 28: 28: [----------] 4 tests from OptionalMemberSwapTest 28: [ RUN ] OptionalMemberSwapTest.CanSwapDisengagedWithDisengaged @@ -125707,8 +125736,8 @@ 28: 28: [----------] 1 test from MakeNotNull 28: [ RUN ] MakeNotNull.Works -28: [ OK ] MakeNotNull.Works (0 ms) -28: [----------] 1 test from MakeNotNull (0 ms total) +28: [ OK ] MakeNotNull.Works (1 ms) +28: [----------] 1 test from MakeNotNull (1 ms total) 28: 28: [----------] 1 test from NotNull 28: [ RUN ] NotNull.WorksInContainers @@ -125851,7 +125880,7 @@ 28: [ RUN ] StringViewTest.CanCreateViewWithLiteralSVInStringViewLiteralsNamespace 28: [ OK ] StringViewTest.CanCreateViewWithLiteralSVInStringViewLiteralsNamespace (0 ms) 28: [ RUN ] StringViewTest.CanCreateViewWithLiteralSVInLiteralsNamespace -28: [ OK ] StringViewTest.CanCreateViewWithLiteralSVInLiteralsNamespace (0 ms) +28: [ OK ] StringViewTest.CanCreateViewWithLiteralSVInLiteralsNamespace (1 ms) 28: [ RUN ] StringViewTest.CanCreateViewWithLiteral_SV 28: [ OK ] StringViewTest.CanCreateViewWithLiteral_SV (0 ms) 28: [ RUN ] StringViewTest.CanCreateViewWithLiteral_SVInLiteralsStringViewLiteralsNamespace @@ -125876,7 +125905,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (0 ms total) +28: [----------] 80 tests from StringViewTest (1 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -125892,9 +125921,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (1 ms total) +28: [==========] 170 tests from 12 test cases ran. (3 ms total) 28: [ PASSED ] 170 tests. -28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.26 sec +28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.28 sec test 29 Start 29: FileIOTests @@ -125906,8 +125935,8 @@ 29: [ RUN ] FileMD5Test.CanComputeMD5 29: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 29: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong -29: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -29: [----------] 2 tests from FileMD5Test (1 ms total) +29: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (1 ms) +29: [----------] 2 tests from FileMD5Test (2 ms total) 29: 29: [----------] 3 tests from MrcSerializer 29: [ RUN ] MrcSerializer.DefaultHeaderValuesAreSet @@ -125926,7 +125955,7 @@ 29: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 29: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (0 ms) +29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) 29: [----------] 4 tests from MrcDensityMap (2 ms total) 29: 29: [----------] 8 tests from MrcDensityMapHeaderTest @@ -126017,17 +126046,17 @@ 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) 29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 33 tests from 8 test cases ran. (6 ms total) +29: [==========] 33 tests from 8 test cases ran. (8 ms total) 29: [ PASSED ] 33 tests. -29/30 Test #29: FileIOTests ...................... Passed 0.27 sec +29/30 Test #29: FileIOTests ...................... Passed 0.29 sec test 30 Start 30: SelectionUnitTests @@ -126048,7 +126077,7 @@ 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology -30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (1 ms) +30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology @@ -126071,7 +126100,7 @@ 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -30: [----------] 15 tests from IndexBlockTest (1 ms total) +30: [----------] 15 tests from IndexBlockTest (3 ms total) 30: 30: [----------] 11 tests from IndexMapTest 30: [ RUN ] IndexMapTest.InitializesAtomBlock @@ -126085,9 +126114,9 @@ 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 30: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll -30: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (1 ms) +30: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 30: [ RUN ] IndexMapTest.InitializesMoleculeBlock -30: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) +30: [ OK ] IndexMapTest.InitializesMoleculeBlock (1 ms) 30: [ RUN ] IndexMapTest.MapsSingleBlock 30: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocks @@ -126095,7 +126124,7 @@ 30: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 30: [ RUN ] IndexMapTest.HandlesMultipleRequests -30: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +30: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) 30: [----------] 11 tests from IndexMapTest (2 ms total) 30: 30: [----------] 3 tests from IndexGroupsAndNamesTest @@ -126109,23 +126138,23 @@ 30: 30: [----------] 15 tests from NeighborhoodSearchTest 30: [ RUN ] NeighborhoodSearchTest.SimpleSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSearch (12 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearch (17 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (11 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (18 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchBox 30: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (7 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (12 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (7 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (4 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (33 ms) +30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (57 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -126135,26 +126164,26 @@ 30: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 30: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -30: [----------] 15 tests from NeighborhoodSearchTest (78 ms total) +30: [----------] 15 tests from NeighborhoodSearchTest (126 ms total) 30: 30: [----------] 12 tests from PositionCalculationTest 30: [ RUN ] PositionCalculationTest.ComputesAtomPositions 30: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -30: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) +30: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) 30: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 30: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions 30: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions -30: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (1 ms) +30: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) +30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionMask 30: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms @@ -126165,33 +126194,33 @@ 30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) 30: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -30: [----------] 12 tests from PositionCalculationTest (2 ms total) +30: [----------] 12 tests from PositionCalculationTest (3 ms total) 30: 30: [----------] 29 tests from SelectionCollectionTest 30: [ RUN ] SelectionCollectionTest.HandlesNoSelections -30: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 30: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 30: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 @@ -126199,15 +126228,15 @@ 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed -30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo @@ -126225,28 +126254,28 @@ 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -30: [----------] 29 tests from SelectionCollectionTest (6 ms total) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) +30: [----------] 29 tests from SelectionCollectionTest (11 ms total) 30: 30: [----------] 14 tests from SelectionCollectionInteractiveTest 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation -30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections @@ -126256,32 +126285,32 @@ 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -30: [----------] 14 tests from SelectionCollectionInteractiveTest (4 ms total) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) +30: [----------] 14 tests from SelectionCollectionInteractiveTest (6 ms total) 30: 30: [----------] 66 tests from SelectionCollectionDataTest 30: [ RUN ] SelectionCollectionDataTest.HandlesAllNone -30: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResnr 30: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesChain 30: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMass -30: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCharge -30: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode @@ -126289,37 +126318,37 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBeta -30: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResname 30: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 30: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -30: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 30: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections @@ -126335,11 +126364,11 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions -30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching @@ -126349,7 +126378,7 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame @@ -126367,7 +126396,7 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 30: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables @@ -126377,22 +126406,22 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables -30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -30: [----------] 66 tests from SelectionCollectionDataTest (36 ms total) +30: [----------] 66 tests from SelectionCollectionDataTest (50 ms total) 30: 30: [----------] 17 tests from SelectionOptionTest 30: [ RUN ] SelectionOptionTest.ParsesSimpleSelection @@ -126402,7 +126431,7 @@ 30: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired -30: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) +30: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptySelections 30: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections @@ -126410,7 +126439,7 @@ 30: [ RUN ] SelectionOptionTest.HandlesTooManySelections 30: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewSelections -30: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) +30: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 30: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesAdjuster @@ -126428,14 +126457,14 @@ 30: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -30: [----------] 17 tests from SelectionOptionTest (3 ms total) +30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) +30: [----------] 17 tests from SelectionOptionTest (5 ms total) 30: 30: [----------] 9 tests from SelectionFileOptionTest 30: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 30: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -30: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) +30: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 30: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile @@ -126449,22 +126478,22 @@ 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles -30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) 30: [----------] 9 tests from SelectionFileOptionTest (2 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 192 tests from 11 test cases ran. (134 ms total) +30: [==========] 192 tests from 11 test cases ran. (208 ms total) 30: [ PASSED ] 192 tests. -30/30 Test #30: SelectionUnitTests ............... Passed 0.40 sec +30/30 Test #30: SelectionUnitTests ............... Passed 0.49 sec 100% tests passed, 0 tests failed out of 30 Label Time Summary: -GTest = 9.07 sec*proc (30 tests) -MpiTest = 0.84 sec*proc (3 tests) -UnitTest = 9.07 sec*proc (30 tests) +GTest = 9.90 sec*proc (30 tests) +MpiTest = 1.08 sec*proc (3 tests) +UnitTest = 9.90 sec*proc (30 tests) -Total Test time (real) = 9.12 sec +Total Test time (real) = 9.95 sec touch build-openmpi dh_testdir # Build speedy, stripped-down version just for documentation generation. @@ -126589,12 +126618,12 @@ -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported --- Detected build CPU vendor - Intel --- Detected build CPU brand - Intel Core Processor (Haswell) --- Detected build CPU family - 6 --- Detected build CPU model - 60 --- Detected build CPU stepping - 1 --- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic +-- Detected build CPU vendor - AMD +-- Detected build CPU brand - AMD Opteron 62xx class CPU +-- Detected build CPU family - 21 +-- Detected build CPU model - 1 +-- Detected build CPU stepping - 2 +-- Detected build CPU features - aes amd apic avx clfsh cmov cx8 cx16 lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdtscp sse2 sse3 sse4a sse4.1 sse4.2 ssse3 x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 @@ -126683,7 +126712,7 @@ -- Configuring done -- Generating done -- Build files have been written to: /build/reproducible-path/gromacs-2020.6/build/documentation -/usr/bin/make -j16 gmx -C build/documentation +/usr/bin/make -j7 gmx -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 gmx @@ -126696,186 +126725,186 @@ /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -Scanning dependencies of target lmfit_objlib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -Scanning dependencies of target linearalgebra -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -Scanning dependencies of target vmddlopen -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp Scanning dependencies of target scanner -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +Scanning dependencies of target lmfit_objlib +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -Scanning dependencies of target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -Scanning dependencies of target tng_io_zlib -Scanning dependencies of target tng_io_obj -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +Scanning dependencies of target tng_io_zlib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 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'/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c Scanning dependencies of target thread_mpi make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build [ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/compress.c +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -Scanning dependencies of target modularsimulator +Scanning dependencies of target linearalgebra make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/crc32.c -[ 0%] Built target vmddlopen +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/compress.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/deflate.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/crc32.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/inftrees.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/profile.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 0%] Built target tng_io_zlib cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 3%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 3%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 3%] Built target linearalgebra cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 3%] Built target scanner -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 3%] Built target mdrun_objlib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 6%] Built target tng_io_obj make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 8%] Built target modularsimulator @@ -127669,7 +127698,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' # Generate PDF -/usr/bin/make -j16 manual -C build/documentation +/usr/bin/make -j7 manual -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 manual @@ -127694,7 +127723,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' # Generate man pages -/usr/bin/make -j16 man -C build/documentation +/usr/bin/make -j7 man -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 man @@ -127707,129 +127736,129 @@ /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Scanning dependencies of target sphinx-image-conversion -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +[ 0%] Built target scanner +[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +[ 2%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 2%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 2%] Built target tng_io_zlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +[ 5%] Built target thread_mpi +[ 5%] Built target release-version-info +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend +Scanning dependencies of target sphinx-image-conversion +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-image-conversion-timestamp.txt -[ 0%] Built target scanner -[ 0%] Built target mdrun_objlib -[ 2%] Built target tng_io_obj -[ 2%] Built target release-version-info -[ 2%] Built target tng_io_zlib -[ 4%] Built target modularsimulator -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= -[ 5%] Built target vmddlopen -[ 7%] Built target thread_mpi -[ 7%] Built target lmfit_objlib -[ 7%] Built target linearalgebra +make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 7%] Built target view_objlib -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend Scanning dependencies of target sphinx-input-rst make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build +[ 5%] Built target vmddlopen +[ 5%] Built target linearalgebra make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/xvgr.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/xvgr.png -[ 7%] Built target sphinx-image-conversion +[ 5%] Built target view_objlib cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/conf-vars.py.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py -D SPHINX_EXTENSION_PATH=/build/reproducible-path/gromacs-2020.6/docs -D RELENG_PATH= -D IMAGE_CONVERT_STRING=impossible -D EXPECTED_DOXYGEN_VERSION=1.8.5 -D EXPECTED_SPHINX_VERSION=1.6.1 -D CMAKE_MINIMUM_REQUIRED_VERSION=3.9.6 -D REQUIRED_CUDA_VERSION=9.0 -D REQUIRED_OPENCL_MIN_VERSION=1.2 -D REQUIRED_CUDA_COMPUTE_CAPABILITY=3.0 -D REGRESSIONTEST_VERSION=2020.6-Debian-2020.6-2 -D SOURCE_MD5SUM=unknown -D REGRESSIONTEST_MD5SUM_STRING=unknown -D GMX_TNG_MINIMUM_REQUIRED_VERSION=1.7.10 -D GMX_LMFIT_REQUIRED_VERSION=7.0 -D "GMX_MANUAL_DOI_STRING=This is not a release build of GROMACS, so please reference one of the GROMACS papers and the base release of the manual." -D "GMX_SOURCE_DOI_STRING=This is not a release build of GROMACS. Please reference one of the GROMACS papers, as well as the base release that this version is built from. Also, please state what modifcations have been performed or where the version was sourced from." -D GMXAPI_PYTHON_STAGING_DIR= -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/download.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/download.rst +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/conf.py /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf.py +[ 7%] Built target modularsimulator cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/links.dat /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/links.dat cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/build-system.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/build-system.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/change-management.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/change-management.rst -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/commitstyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/commitstyle.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/commitstyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/commitstyle.rst +[ 7%] Built target sphinx-image-conversion +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/documentation-generation.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/documentation-generation.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/contribute.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/contribute.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/doxygen.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/doxygen.rst @@ -127934,8 +127963,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/security.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/security.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/system-preparation.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/system-preparation.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/terminology.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/terminology.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/releng/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/releng/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/gmxapi/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/gmxapi/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/gmxapi/userguide/install.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/gmxapi/userguide/install.rst @@ -127954,9 +127981,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/pdb2gmx-input-files.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/pdb2gmx-input-files.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/topology-file-formats.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/topology-file-formats.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/force-field-organization.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/force-field-organization.rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/file-formats.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/file-formats.rst -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/run-parameters.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/run-parameters.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/details.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/details.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/averages.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/averages.rst @@ -127965,6 +127990,8 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/adress.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/adress.png cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/plotje.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/plotje.png cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input-rst-timestamp.txt +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 20%] Built target sphinx-input-rst /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend @@ -127977,6 +128004,8 @@ make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 20%] Built target sphinx-input +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' @@ -128012,7 +128041,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/sphinx-build -q -b man -w sphinx-man.log -d /build/reproducible-path/gromacs-2020.6/build/documentation/docs/_doctrees -t do_man /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input /build/reproducible-path/gromacs-2020.6/build/documentation/docs/man WARNING: html_static_path entry '_static' does not exist WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' @@ -128024,7 +128053,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' # Generate HTML -/usr/bin/make -j16 webpage -C build/documentation +/usr/bin/make -j7 webpage -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 webpage @@ -128037,144 +128066,144 @@ /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/depend /usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual/CMakeFiles/manual.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/build Scanning dependencies of target doxygen-source-timestamp -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual && /usr/bin/cmake -E echo "Cannot build PDF manual, because a working form of ImageMagick convert is not available" +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-image-conversion.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build -/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-image-conversion.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/doxygen-source-timestamp.txt make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual && /usr/bin/cmake -E echo "Cannot build PDF manual, because a working form of ImageMagick convert is not available" +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +Cannot build PDF manual, because a working form of ImageMagick convert is not available make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 0%] Built target manual +[ 0%] Built target scanner +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +[ 2%] Built target thread_mpi +[ 2%] Built target sphinx-image-conversion +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +[ 2%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +[ 2%] Built target release-version-info +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +[ 2%] Built target doxygen-source-timestamp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target sphinx-image-conversion -Cannot build PDF manual, because a working form of ImageMagick convert is not available make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target scanner -[ 0%] Built target tng_io_zlib -[ 0%] Built target mdrun_objlib -[ 2%] Built target linearalgebra -[ 2%] Built target tng_io_obj -[ 2%] Built target release-version-info [ 2%] Built target vmddlopen +[ 2%] Built target linearalgebra +[ 2%] Built target tng_io_zlib /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend +[ 5%] Built target tng_io_obj /usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend -[ 2%] Built target lmfit_objlib -[ 2%] Built target view_objlib +[ 5%] Built target lmfit_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= +[ 5%] Built target view_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target manual cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= -[ 2%] Built target doxygen-source-timestamp -[ 5%] Built target thread_mpi [ 7%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend Scanning dependencies of target doxygen-version make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input-rst.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' @@ -128240,7 +128269,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/_static cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/sphinx-build -q -b html -w sphinx-html.log -d /build/reproducible-path/gromacs-2020.6/build/documentation/docs/_doctrees /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input /build/reproducible-path/gromacs-2020.6/build/documentation/docs/html WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' @@ -128393,16 +128422,16 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-user.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/dep-graphs-dot.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-user Scanning dependencies of target dep-graphs-dot -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build +Scanning dependencies of target doxygen-user make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/python3 /build/reproducible-path/gromacs-2020.6/docs/doxygen/graphbuilder.py -S /build/reproducible-path/gromacs-2020.6 -B /build/reproducible-path/gromacs-2020.6/build/documentation --ignore-cycles /build/reproducible-path/gromacs-2020.6/docs/doxygen/cycle-suppressions.txt -o /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=user -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... @@ -128421,18 +128450,18 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-full.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-lib.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-lib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build Scanning dependencies of target doxygen-full +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build +Scanning dependencies of target doxygen-lib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=lib -P RunDoxygen.cmake cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=full -P RunDoxygen.cmake +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=lib -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. @@ -129486,7 +129515,7 @@ dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs -/usr/bin/make -j16 -C build/basic install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs +/usr/bin/make -j7 -C build/basic install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic//CMakeFiles/progress.marks @@ -129499,90 +129528,90 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 0%] Built target scanner +[ 1%] Built target linearalgebra +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +[ 1%] Built target lmfit_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +[ 3%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +[ 6%] Built target thread_mpi +[ 8%] Built target modularsimulator make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +[ 8%] Built target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +[ 8%] Built target vmddlopen +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 10%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 0%] Built target scanner -[ 0%] Built target lmfit_objlib -[ 1%] Built target tng_io_obj -[ 1%] Built target vmddlopen -[ 3%] Built target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 5%] Built target modularsimulator -[ 6%] Built target view_objlib -[ 11%] Built target thread_mpi -[ 11%] Built target linearalgebra -[ 11%] Built target release-version-info -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 11%] Built target view_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' @@ -129601,8 +129630,8 @@ make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build @@ -129628,554 +129657,554 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pme_error.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjconv.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gyrate.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sorient.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-x2top.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-xpm2ps.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-lie.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pairdist.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-insert-molecules.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-traj.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dump.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-polystat.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjorder.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-covar.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wham.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-chi.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-report-methods.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sans.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bundle.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hbond.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-analyze.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-select.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genconf.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rotmat.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-potential.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-cluster.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dipoles.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-angle.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rms.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmr.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-convert-trj.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-msd.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-check.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mdmat.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-velacc.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rmsdist.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spol.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dos.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sorient.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-cluster.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saltbr.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-editconf.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-confrms.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pairdist.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-x2top.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-analyze.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-grompp.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-enemat.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sans.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rmsf.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saxs.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-solvate.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjcat.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mdrun.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rotacf.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-order.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mdmat.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-enemat.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-do_dssp.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-energy.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gyrate.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mindist.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-awh.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rdf.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-density.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-principal.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-current.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densmap.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trajectory.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hydorder.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-view.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-solvate.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helix.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sigeps.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dielectric.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-eneconv.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-h2order.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bundle.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-traj.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjorder.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-tune_pme.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-filter.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gangle.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helix.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-report-methods.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rama.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genrestr.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-insert-molecules.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hbond.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sham.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-make_ndx.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-editconf.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-anaeig.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-extract-cluster.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-freevolume.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-distance.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-make_edi.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-velacc.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-xpm2ps.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-covar.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nonbonded-benchmark.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genconf.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mindist.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saltbr.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmens.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-principal.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wheel.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-angle.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sasa.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densorder.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spatial.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-order.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hydorder.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rama.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjcat.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-energy.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-extract-cluster.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helixorient.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dipoles.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-clustsize.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-disre.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spatial.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-potential.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spol.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densorder.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmeig.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-distance.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densmap.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-density.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gangle.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-eneconv.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rdf.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bar.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjconv.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pme_error.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wheel.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-polystat.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saxs.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dump.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-lie.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rotacf.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-convert-trj.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-select.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dos.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dyecoupl.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wham.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trajectory.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-convert-tpr.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rms.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-msd.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-filter.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genion.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-h2order.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-awh.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-confrms.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dyecoupl.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-clustsize.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bar.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helixorient.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genrestr.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sham.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-chi.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sasa.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-anaeig.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sigeps.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-make_edi.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-help.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmeig.1 --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dielectric.1 +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmens.1 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/README.tutor -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ethanol.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/1propanol.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ca-shift.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/dgsolv.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/electroneg.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/sw.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip5p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a2.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG45a3.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a5.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip5p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ps.m2p +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residuetypes.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/export.dlg +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/defselection.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-10.xvg +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a1.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.gro +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ss.map +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/specbond.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/phbres.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a2.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/edissoc.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.gro --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-11.xvg --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip5p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tips3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/refi_aa.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/nsfactor.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/co-shift.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/random.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a1.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/specbond.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/elements.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/xlateat.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/cb-shift.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/surface.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ca-shift.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa-n.tst +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-11.xvg +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/popc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/dppc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/edissoc.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/vdw-msms.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-9.xvg -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.rtp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-12.xvg +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/atom_nom.tbl +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip5p.gro +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residues.dtd -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.r2b -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.rtp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/dgsolv.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ss.map --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/export.dlg --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residues.xml --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residuetypes.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/nsfactor.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tips3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-8.xvg --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/refi_aa.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/defselection.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ps.m2p --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-9.xvg --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/surface.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spc216.gro +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/bonds.dlg +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.doc +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/1propanol.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip3p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ethanol.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexwat-ferguson.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/vdw-msms.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/elements.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG45a3.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip5p.gro --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ha-shift.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residues.dtd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residues.xml +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spc.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/sfactor.dat -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.r2b -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffbonded.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4pew.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.vsd +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.hdb +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/urea.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.arn +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.rtp +-- Installing: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spce.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.rtp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/watermodels.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4p.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spc.itp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.arn -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-10.xvg --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/urea.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.arn --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip5p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4pew.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/xlateat.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/cb-shift.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.r2b +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.rtp +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/README +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/phbres.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ha-shift.dat +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-8.xvg +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-12.xvg -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/vdwradii.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/sw.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/atommass.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/atom_nom.tbl --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a5.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/bonds.dlg --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa-n.tst --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spc216.gro --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/electroneg.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/popc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/dppc.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spce.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ions.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/co-shift.dat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/README +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspc.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/template/CMakeLists.txt -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/template/README -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/template/template.cpp @@ -130288,23 +130317,23 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/gmx-completion.bash -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/gmx-completion-gmx.bash -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session/resources.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/exceptions.h --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapi.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gromacsfwd.h --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/context.h --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdmodule.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdsignals.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/status.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapicompat.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapi.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session/resources.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/system.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat/mdparams.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat/tpr.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat/mdparams.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/context.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md.h --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapicompat.h --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdmodule.h --- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdsignals.h +-- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/version.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/lib/i386-linux-gnu/libgmxapi.so.0.1.0 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/lib/i386-linux-gnu/libgmxapi.so.0 @@ -130314,7 +130343,7 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/cmake/gmxapi/gmxapi-config.cmake make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -j16 -C build/basic-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs +/usr/bin/make -j7 -C build/basic-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic-dp//CMakeFiles/progress.marks @@ -130326,91 +130355,91 @@ /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 0%] Built target lmfit_objlib -[ 1%] Built target scanner -[ 1%] Built target vmddlopen make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 1%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +[ 3%] Built target scanner +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +[ 3%] Built target linearalgebra +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +[ 3%] Built target lmfit_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +[ 3%] Built target release-version-info +[ 6%] Built target thread_mpi +[ 8%] Built target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target linearalgebra -[ 3%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 3%] Built target mdrun_objlib -[ 6%] Built target thread_mpi -[ 8%] Built target view_objlib -[ 10%] Built target modularsimulator -[ 10%] Built target release-version-info +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 8%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 8%] Built target mdrun_objlib +[ 10%] Built target view_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -130426,9 +130455,9 @@ make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -130447,554 +130476,554 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pme_error.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjconv.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gyrate.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sorient.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-x2top.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-xpm2ps.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-lie.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pairdist.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-insert-molecules.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-traj.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dump.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-polystat.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjorder.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-covar.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wham.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-chi.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-report-methods.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sans.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bundle.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hbond.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-analyze.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-select.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rotmat.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-potential.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-cluster.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dipoles.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-angle.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmr.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-convert-trj.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-check.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mdmat.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-velacc.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rmsdist.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spol.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dos.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sorient.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-cluster.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saltbr.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-editconf.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-confrms.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pairdist.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-x2top.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-grompp.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-enemat.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sans.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rmsf.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saxs.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-solvate.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mdrun.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rotacf.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-order.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mdmat.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-enemat.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-do_dssp.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-energy.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gyrate.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mindist.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-awh.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rdf.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-density.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-current.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densmap.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trajectory.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-view.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-solvate.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helix.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sigeps.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dielectric.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-eneconv.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-h2order.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bundle.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-traj.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-tune_pme.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-filter.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gangle.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helix.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-report-methods.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rama.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genrestr.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-insert-molecules.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hbond.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-make_ndx.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-editconf.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-anaeig.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-freevolume.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-distance.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-make_edi.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-velacc.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-xpm2ps.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-covar.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nonbonded-benchmark.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genconf.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-mindist.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saltbr.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmens.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-principal.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wheel.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-angle.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sasa.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densorder.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spatial.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-order.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-hydorder.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rama.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjcat.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-energy.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-extract-cluster.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helixorient.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dipoles.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-disre.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spatial.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-potential.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-spol.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densorder.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmeig.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-distance.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-density.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-gangle.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-eneconv.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rdf.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bar.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trjconv.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pme_error.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wheel.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-polystat.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-saxs.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dump.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-lie.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rotacf.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-convert-trj.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-select.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dos.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dyecoupl.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-wham.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-convert-tpr.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-rms.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-msd.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genion.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-h2order.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-awh.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-confrms.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dyecoupl.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-clustsize.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-bar.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-helixorient.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-genrestr.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sham.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-chi.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sasa.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-anaeig.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-sigeps.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-help.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmeig.1 --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-dielectric.1 +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/README.tutor -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ethanol.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/1propanol.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/watermodels.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ca-shift.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/dgsolv.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/electroneg.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/sw.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/urea.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip5p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a2.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG45a3.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a5.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/urea.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip5p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ps.m2p +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residuetypes.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/export.dlg +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/defselection.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-10.xvg +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a1.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.gro +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ss.map +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/specbond.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/urea.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/urea.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/phbres.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a2.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/edissoc.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip4p.gro --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-11.xvg --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip5p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tips3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/refi_aa.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/nsfactor.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/random.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG43a1.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/specbond.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/elements.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/xlateat.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/cb-shift.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/surface.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ca-shift.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa-n.tst +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-11.xvg +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/popc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/dppc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/edissoc.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/vdw-msms.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/urea.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/urea.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4pew.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-12.xvg +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/atom_nom.tbl +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/tip5p.gro +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residues.dtd -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/urea.itp --- Up-to-date: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/residuetypes.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/nsfactor.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/urea.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spce.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/watermodels.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4pew.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.hdb --- Up-to-date: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tips3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spce.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-8.xvg --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/refi_aa.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/defselection.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ps.m2p --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-9.xvg --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/surface.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spc216.gro +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/bonds.dlg +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.doc +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/1propanol.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip3p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ethanol.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp +-- Up-to-date: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b +-- Up-to-date: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/urea.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.arn --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffbonded.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4pew.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.vsd +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.hdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/urea.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.arn +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.rtp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.r2b +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spce.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/atomtypes.atp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/watermodels.dat +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4p.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/spc.itp +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip5p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4pew.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/spce.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ions.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/table6-10.xvg --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spc.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb --- Up-to-date: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/co-shift.dat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/README +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/gromacs/top/flexspc.itp -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/GMXRC -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/GMXRC.zsh @@ -131026,23 +131055,23 @@ -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/gmx-completion.bash -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session/resources.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/exceptions.h --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapi.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gromacsfwd.h --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/context.h --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdmodule.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdsignals.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/status.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapicompat.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapi.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session/resources.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/system.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat/mdparams.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat/tpr.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/compat/mdparams.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/context.h -- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md.h --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/gmxapicompat.h --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdmodule.h --- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/md/mdsignals.h +-- Up-to-date: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/session.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/include/gmxapi/version.h -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/lib/i386-linux-gnu/libgmxapi_d.so.0.1.0 -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/lib/i386-linux-gnu/libgmxapi_d.so.0 @@ -131059,7 +131088,7 @@ dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich -/usr/bin/make -j16 -C build/mpich install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich +/usr/bin/make -j7 -C build/mpich install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich//CMakeFiles/progress.marks @@ -131071,73 +131100,73 @@ /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 0%] Built target lmfit_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 0%] Built target linearalgebra [ 1%] Built target thread_mpi [ 1%] Built target scanner -[ 1%] Built target lmfit_objlib -[ 1%] Built target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= [ 4%] Built target tng_io_obj -[ 5%] Built target mdrun_objlib -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +[ 5%] Built target release-version-info +[ 7%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -131178,7 +131207,7 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich/usr/bin/gmx-completion-mdrun_mpi.mpich.bash make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -j16 -C build/mpich-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich +/usr/bin/make -j7 -C build/mpich-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich-dp//CMakeFiles/progress.marks @@ -131190,73 +131219,73 @@ /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 0%] Built target scanner +[ 0%] Built target linearalgebra [ 1%] Built target thread_mpi -[ 1%] Built target scanner -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend [ 1%] Built target lmfit_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 4%] Built target tng_io_obj -[ 4%] Built target linearalgebra -[ 5%] Built target mdrun_objlib -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +[ 7%] Built target modularsimulator +[ 7%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' @@ -131309,7 +131338,7 @@ dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi -/usr/bin/make -j16 -C build/openmpi install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi +/usr/bin/make -j7 -C build/openmpi install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi//CMakeFiles/progress.marks @@ -131322,73 +131351,73 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 0%] Built target lmfit_objlib +[ 0%] Built target scanner [ 1%] Built target thread_mpi -[ 1%] Built target scanner -[ 1%] Built target lmfit_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 1%] Built target linearalgebra +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend [ 4%] Built target tng_io_obj -[ 5%] Built target mdrun_objlib -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +[ 4%] Built target linearalgebra +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 7%] Built target modularsimulator +[ 7%] Built target release-version-info +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 8%] Built target mdrun_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build @@ -131428,7 +131457,7 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi/usr/bin/gmx-completion-mdrun_mpi.openmpi.bash make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -j16 -C build/openmpi-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi +/usr/bin/make -j7 -C build/openmpi-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi-dp//CMakeFiles/progress.marks @@ -131440,74 +131469,74 @@ /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 0%] Built target lmfit_objlib +[ 0%] Built target scanner +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend [ 1%] Built target thread_mpi +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +[ 1%] Built target lmfit_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 2%] Built target linearalgebra [ 4%] Built target tng_io_obj -[ 4%] Built target linearalgebra -[ 4%] Built target scanner -[ 5%] Built target mdrun_objlib +[ 7%] Built target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 7%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 8%] Built target mdrun_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build @@ -131603,7 +131632,7 @@ Now scanning "/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc", found 19015 files. Now have 19015 files in total. Removed 0 files due to nonunique device and inode. -Total size is 225026055 bytes or 215 MiB +Total size is 225020541 bytes or 215 MiB Removed 6578 files due to unique sizes from list.12437 files left. Now eliminating candidates based on first bytes:removed 2877 files from list.9560 files left. Now eliminating candidates based on last bytes:removed 1138 files from list.8422 files left. @@ -131614,7349 +131643,7349 @@ Now making symbolic links. creating Making 3671 links. symlinks -r -s -c /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/ -dangling: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs-data/COPYING -> copyright -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/threefry_8h__dep__incl.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/threefry_8h__dep__incl.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/threefry_8h__dep__incl.svg -> ../html-lib/threefry_8h__dep__incl.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000071_000053.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/dir_000072_000054.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000071_000053.xhtml -> ../html-full/dir_000072_000054.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataValue.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataValue.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataValue.xhtml -> ../html-full/classgmx_1_1AnalysisDataValue.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_17.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_83.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_17.svg -> ../html-full/inherit_graph_83.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structt__pargs.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structt__pargs.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structt__pargs.xhtml -> ../html-full/structt__pargs.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000009_000104.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_000010_000105.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000009_000104.xhtml -> ../html-lib/dir_000010_000105.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOption__coll__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1EnumOption__coll__graph.svg -> ../html-full/classgmx_1_1EnumOption__coll__graph.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000032_000034.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_000033_000035.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000032_000034.xhtml -> ../html-lib/dir_000033_000035.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structgmx_1_1OutputRequirements-members.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OutputRequirements-members.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structgmx_1_1OutputRequirements-members.xhtml -> ../html-full/structgmx_1_1OutputRequirements-members.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/examples.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/examples.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/examples.xhtml -> ../html-full/examples.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_33.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_123.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_33.svg -> ../html-full/inherit_graph_123.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/doxygen.css -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/doxygen.css -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/doxygen.css -> ../html-full/doxygen.css -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataModuleSerial__coll__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataModuleSerial__coll__graph.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataModuleSerial__coll__graph.svg -> ../html-full/classgmx_1_1AnalysisDataModuleSerial__coll__graph.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/options_2options_8h.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/options_2options_8h.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/options_2options_8h.xhtml -> ../html-lib/options_2options_8h.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FlagsTemplate-members.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FlagsTemplate-members.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FlagsTemplate-members.xhtml -> ../html-full/classgmx_1_1FlagsTemplate-members.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OutputSelector__coll__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OutputSelector__coll__graph.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OutputSelector__coll__graph.svg -> ../html-full/classgmx_1_1OutputSelector__coll__graph.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__coll__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataAverageModule__coll__graph.svg -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000031_000053.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/dir_000032_000054.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000031_000053.xhtml -> ../html-full/dir_000032_000054.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IOutputAdapter__inherit__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IOutputAdapter__inherit__graph.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IOutputAdapter__inherit__graph.svg -> ../html-full/classgmx_1_1IOutputAdapter__inherit__graph.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationSignal-members.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationSignal-members.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationSignal-members.xhtml -> ../html-full/classgmx_1_1SimulationSignal-members.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000076_000053.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_000077_000054.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_000076_000053.xhtml -> ../html-lib/dir_000077_000054.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/template_8cpp__incl.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/template_8cpp__incl.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/template_8cpp__incl.svg -> ../html-full/template_8cpp__incl.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/setforces_8h__incl.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/setforces_8h__incl.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/setforces_8h__incl.svg -> ../html-full/setforces_8h__incl.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/ioptionscontainer_8h.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/ioptionscontainer_8h.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/ioptionscontainer_8h.xhtml -> ../html-lib/ioptionscontainer_8h.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NormalDistribution.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NormalDistribution.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NormalDistribution.xhtml -> ../html-full/classgmx_1_1NormalDistribution.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/arraysize_8h.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/arraysize_8h.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/arraysize_8h.xhtml -> ../html-lib/arraysize_8h.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/basedefinitions_8h__incl.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/basedefinitions_8h__incl.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/basedefinitions_8h__incl.svg -> ../html-full/basedefinitions_8h__incl.svg -absolute: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classAtomProxy.xhtml -> ../html-full/classAtomProxy.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structgmx_1_1StaticLog2_3_010_01_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1StaticLog2_3_010_01_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structgmx_1_1StaticLog2_3_010_01_4.xhtml -> ../html-full/structgmx_1_1StaticLog2_3_010_01_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_69.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_182.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_69.svg -> ../html-lib/inherit_graph_182.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ExceptionInfo.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ExceptionInfo.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ExceptionInfo.xhtml -> ../html-lib/classgmx_1_1ExceptionInfo.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_137.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_782.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_137.svg -> ../html-full/inherit_graph_782.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_125.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_683.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_125.svg -> ../html-full/inherit_graph_683.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/optionfiletype_8h.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/optionfiletype_8h.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/optionfiletype_8h.xhtml -> ../html-lib/optionfiletype_8h.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/namespacemembers_u.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/namespacemembers_u.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/namespacemembers_u.xhtml -> ../html-lib/namespacemembers_u.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_14.xhtml -> ../../html-full/search/all_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_5.xhtml -> ../../html-full/search/files_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_1.xhtml -> ../../html-full/search/pages_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_a.xhtml -> ../../html-full/search/functions_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_4.xhtml -> ../../html-full/search/pages_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_c.xhtml -> ../../html-full/search/groups_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_10.xhtml -> ../../html-full/search/typedefs_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_4.xhtml -> ../../html-full/search/groups_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_1.xhtml -> ../../html-full/search/groups_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_13.xhtml -> ../../html-full/search/enumvalues_13.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_2.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_2.xhtml -> ../../html-full/search/classes_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_3.xhtml -> ../../html-full/search/pages_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_b.xhtml -> ../../html-full/search/functions_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_0.xhtml -> ../../html-full/search/files_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_9.xhtml -> ../../html-full/search/files_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_b.xhtml -> ../../html-full/search/enumvalues_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_c.xhtml -> ../../html-full/search/enumvalues_c.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_9.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_9.xhtml -> ../../html-full/search/enumvalues_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_e.xhtml -> ../../html-full/search/functions_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_9.xhtml -> ../../html-full/search/typedefs_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_d.xhtml -> ../../html-full/search/files_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_2.xhtml -> ../../html-full/search/defines_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_c.xhtml -> ../../html-full/search/all_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_l.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_l.png +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_l.png -> ../../html-full/search/search_l.png +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_3.xhtml -> ../../html-full/search/defines_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_1.xhtml -> ../../html-full/search/defines_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/related_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/related_0.xhtml -> ../../html-full/search/related_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_11.xhtml -> ../../html-full/search/typedefs_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_2.xhtml -> ../../html-full/search/variables_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_2.xhtml -> ../../html-full/search/typedefs_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_a.xhtml -> ../../html-full/search/groups_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_12.xhtml -> ../../html-full/search/all_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_2.xhtml -> ../../html-full/search/all_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_7.xhtml -> ../../html-full/search/typedefs_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_12.xhtml -> ../../html-full/search/typedefs_12.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_2.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_2.xhtml -> ../../html-full/search/pages_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_d.xhtml -changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_6.xhtml -> ../../html-full/search/defines_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/nomatches.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/nomatches.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/nomatches.xhtml -> ../../html-full/search/nomatches.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_11.xhtml +changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_6.xhtml -> ../../html-full/search/files_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_0.xhtml -> ../../html-full/search/pages_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_3.xhtml +changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_19.xhtml -> ../../html-full/search/all_19.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/close.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/close.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/close.svg -> ../../html-full/search/close.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_5.xhtml -> ../../html-full/search/variables_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_11.xhtml -> ../../html-full/search/functions_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_b.xhtml -> ../../html-full/search/all_b.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search.js -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search.js changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search.js -> ../../html-full/search/search.js -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_12.xhtml -changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_0.xhtml -> ../../html-full/search/pages_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_4.xhtml -> ../../html-full/search/groups_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_9.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_9.xhtml -> ../../html-full/search/enums_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_5.xhtml -> ../../html-full/search/functions_5.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_e.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_e.xhtml -> ../../html-full/search/classes_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_6.xhtml -> ../../html-full/search/pages_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_1.xhtml -> ../../html-full/search/classes_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_5.xhtml -> ../../html-full/search/files_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_5.xhtml -> ../../html-full/search/all_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_a.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_a.xhtml -> ../../html-full/search/enumvalues_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_9.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_9.xhtml -> ../../html-full/search/functions_9.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_6.xhtml -> ../../html-full/search/enums_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_c.xhtml -> ../../html-full/search/defines_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_4.xhtml -> ../../html-full/search/variables_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_14.xhtml -changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_0.xhtml -> ../../html-full/search/defines_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_1.xhtml -> ../../html-full/search/all_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_5.xhtml -changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_e.xhtml -> ../../html-full/search/all_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_11.xhtml -> ../../html-full/search/variables_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_8.xhtml -> ../../html-full/search/pages_8.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_e.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_e.xhtml -> ../../html-full/search/enums_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_7.xhtml -changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_1.xhtml -> ../../html-full/search/functions_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_c.xhtml -> ../../html-full/search/defines_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_2.xhtml -> ../../html-full/search/files_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_4.xhtml -> ../../html-full/search/all_4.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_16.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_16.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_16.xhtml -> ../../html-full/search/all_16.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_2.xhtml -> ../../html-full/search/enumvalues_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_e.xhtml -> ../../html-full/search/functions_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_15.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_15.xhtml -> ../../html-full/search/functions_15.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_13.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_13.xhtml -> ../../html-full/search/variables_13.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_3.xhtml -> ../../html-full/search/pages_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_0.xhtml -> ../../html-full/search/files_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_4.xhtml -> ../../html-full/search/files_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_8.xhtml -> ../../html-full/search/enumvalues_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_f.xhtml -> ../../html-full/search/variables_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_c.xhtml -> ../../html-full/search/variables_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_d.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_d.xhtml -> ../../html-full/search/variables_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_5.xhtml -> ../../html-full/search/all_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_5.xhtml -> ../../html-full/search/enumvalues_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_7.xhtml -> ../../html-full/search/functions_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_b.xhtml -> ../../html-full/search/variables_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/namespaces_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/namespaces_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/namespaces_0.xhtml -> ../../html-full/search/namespaces_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.xhtml -> ../../html-full/search/all_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_4.xhtml -> ../../html-full/search/classes_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_f.xhtml -> ../../html-full/search/all_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_11.xhtml -> ../../html-full/search/all_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_5.xhtml -> ../../html-full/search/defines_5.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_16.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_16.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_16.xhtml -> ../../html-full/search/functions_16.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_14.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_14.xhtml -> ../../html-full/search/all_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_9.xhtml -> ../../html-full/search/all_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_5.xhtml -> ../../html-full/search/classes_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_c.xhtml -> ../../html-full/search/variables_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_4.xhtml -> ../../html-full/search/enums_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_10.xhtml -> ../../html-full/search/all_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_6.xhtml -> ../../html-full/search/functions_6.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_3.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_3.xhtml -> ../../html-full/search/classes_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_2.xhtml -> 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-changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_4.xhtml -> ../../html-full/search/all_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_r.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_r.png -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_r.png -> ../../html-full/search/search_r.png -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_3.xhtml -> ../../html-full/search/defines_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_10.xhtml -> ../../html-full/search/functions_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_1.xhtml -> ../../html-full/search/files_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_c.xhtml -> ../../html-full/search/files_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_7.xhtml -> ../../html-full/search/enums_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_19.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_19.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_19.xhtml -> ../../html-full/search/functions_19.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_f.xhtml -> ../../html-full/search/typedefs_f.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_a.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_a.xhtml -> ../../html-full/search/enums_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_6.xhtml -> ../../html-full/search/variables_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_2.xhtml -> ../../html-full/search/groups_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_6.xhtml -> ../../html-full/search/enumvalues_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_5.xhtml -> ../../html-full/search/defines_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_e.xhtml -> ../../html-full/search/enumvalues_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_1.xhtml -> ../../html-full/search/enumvalues_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_8.xhtml -> ../../html-full/search/groups_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_e.xhtml -> ../../html-full/search/files_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search.css -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search.css +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search.css -> ../../html-full/search/search.css +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/pages_7.xhtml -> ../../html-full/search/pages_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_a.xhtml -> ../../html-full/search/files_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_b.xhtml -> ../../html-full/search/classes_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_7.xhtml -> ../../html-full/search/variables_7.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_8.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_8.xhtml -> ../../html-full/search/typedefs_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_9.xhtml -> ../../html-full/search/enums_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_b.xhtml -> ../../html-full/search/groups_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_a.xhtml -> ../../html-full/search/classes_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_0.xhtml -> ../../html-full/search/classes_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_d.xhtml -> ../../html-full/search/all_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_e.xhtml -> ../../html-full/search/variables_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_7.xhtml -> ../../html-full/search/enumvalues_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_13.xhtml -> ../../html-full/search/variables_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_3.xhtml -> ../../html-full/search/enumvalues_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_8.xhtml -> ../../html-full/search/groups_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_4.xhtml -> ../../html-full/search/defines_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_8.xhtml -> ../../html-full/search/functions_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_14.xhtml -> ../../html-full/search/functions_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_6.xhtml -> ../../html-full/search/classes_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_f.xhtml -> ../../html-full/search/files_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_d.xhtml -> ../../html-full/search/enumvalues_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_4.xhtml -> ../../html-full/search/files_4.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_1.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_1.xhtml -> ../../html-full/search/variables_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_8.xhtml -> ../../html-full/search/enumvalues_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_f.xhtml -> ../../html-full/search/enumvalues_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_3.xhtml -> ../../html-full/search/typedefs_3.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_4.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_4.xhtml -> ../../html-full/search/typedefs_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_11.xhtml -> ../../html-full/search/typedefs_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_5.xhtml -> ../../html-full/search/enums_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_8.xhtml -> ../../html-full/search/classes_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_4.xhtml -> ../../html-full/search/classes_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_0.xhtml -> ../../html-full/search/enumvalues_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_9.xhtml -> ../../html-full/search/functions_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_7.xhtml -> ../../html-full/search/classes_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_5.xhtml -> ../../html-full/search/typedefs_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_14.xhtml -> ../../html-full/search/enumvalues_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_c.xhtml -> ../../html-full/search/functions_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_17.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_17.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_17.xhtml -> ../../html-full/search/functions_17.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_7.xhtml -> ../../html-full/search/files_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_a.xhtml -> ../../html-full/search/enumvalues_a.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_d.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_d.xhtml -> ../../html-full/search/functions_d.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_9.xhtml -> ../../html-full/search/variables_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_3.xhtml -> ../../html-full/search/enums_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_9.xhtml -> ../../html-full/search/defines_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_d.xhtml -> ../../html-full/search/enums_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_1.xhtml -> ../../html-full/search/enums_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_c.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_c.xhtml -> ../../html-full/search/classes_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_3.xhtml -> ../../html-full/search/enumvalues_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_b.xhtml -> ../../html-full/search/typedefs_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_f.xhtml -> ../../html-full/search/enumvalues_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_10.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_10.xhtml -> ../../html-full/search/functions_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_6.xhtml -> ../../html-full/search/typedefs_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_e.xhtml -> ../../html-full/search/variables_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_c.xhtml -> ../../html-full/search/files_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_1.xhtml -> ../../html-full/search/functions_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_5.xhtml -> ../../html-full/search/classes_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_e.xhtml -> ../../html-full/search/all_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_18.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_18.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_18.xhtml -> ../../html-full/search/all_18.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_8.xhtml -> ../../html-full/search/variables_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_14.xhtml -> ../../html-full/search/variables_14.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_a.xhtml changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_a.xhtml -> ../../html-full/search/defines_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/namespaces_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/namespaces_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/namespaces_0.xhtml -> ../../html-full/search/namespaces_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_8.xhtml -> ../../html-full/search/all_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_8.xhtml -> ../../html-full/search/enums_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_1.xhtml -> ../../html-full/search/enums_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_19.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_19.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_19.xhtml -> ../../html-full/search/functions_19.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_a.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_a.xhtml -> ../../html-full/search/variables_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_6.xhtml -> ../../html-full/search/groups_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/classes_0.xhtml -> ../../html-full/search/classes_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_11.xhtml -> ../../html-full/search/files_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_19.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_19.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_19.xhtml -> ../../html-full/search/all_19.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_3.xhtml -> ../../html-full/search/files_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_b.xhtml -> ../../html-full/search/all_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_12.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_12.xhtml -> ../../html-full/search/all_12.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_d.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_d.xhtml -> ../../html-full/search/enums_d.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_8.xhtml -> ../../html-full/search/files_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_10.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_10.xhtml -> ../../html-full/search/files_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_b.xhtml -> ../../html-full/search/enums_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_c.xhtml -> ../../html-full/search/groups_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_3.xhtml -> ../../html-full/search/groups_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_2.xhtml -> ../../html-full/search/typedefs_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_0.xhtml -> ../../html-full/search/enumvalues_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_f.xhtml -> ../../html-full/search/variables_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_12.xhtml -> 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_b.xhtml -> ../../html-full/search/enums_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_5.xhtml -> ../../html-full/search/enums_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_13.xhtml -> ../../html-full/search/functions_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_2.xhtml -> ../../html-full/search/functions_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/groups_5.xhtml -> ../../html-full/search/groups_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_e.xhtml -> ../../html-full/search/enumvalues_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_3.xhtml -> ../../html-full/search/variables_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_8.xhtml -> ../../html-full/search/defines_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_0.xhtml -> ../../html-full/search/variables_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enums_0.xhtml -> ../../html-full/search/enums_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_2.xhtml -> ../../html-full/search/enumvalues_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_b.xhtml -> ../../html-full/search/defines_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/enumvalues_1.xhtml -> ../../html-full/search/enumvalues_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_8.xhtml -> ../../html-full/search/all_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_11.xhtml -> ../../html-full/search/files_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_18.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_18.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_18.xhtml -> ../../html-full/search/all_18.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_0.xhtml -> ../../html-full/search/all_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/variables_a.xhtml -> ../../html-full/search/variables_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/files_b.xhtml -> ../../html-full/search/files_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/typedefs_e.xhtml -> ../../html-full/search/typedefs_e.xhtml absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_4.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_30.svg changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_4.svg -> ../html-full/inherit_graph_30.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structgmx__moltype__t.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx__moltype__t.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/structgmx__moltype__t.xhtml -> ../html-full/structgmx__moltype__t.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AbstractAverageHistogram__coll__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AbstractAverageHistogram__coll__graph.svg -> ../html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Range-members.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Range-members.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Range-members.xhtml -> 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NormalDistribution_1_1param__type.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NormalDistribution_1_1param__type.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NormalDistribution_1_1param__type.xhtml -> ../html-full/classgmx_1_1NormalDistribution_1_1param__type.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_6.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_6.png +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_6.png -> ../html-full/form_6.png +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_18.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_31.png +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/form_18.png -> ../html-full/form_31.png +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__inherit__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOption__coll__graph.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__inherit__graph.svg -> ../html-full/classgmx_1_1BooleanOption__coll__graph.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NotImplementedError__inherit__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NotImplementedError__coll__graph.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1NotImplementedError__inherit__graph.svg -> ../html-full/classgmx_1_1NotImplementedError__coll__graph.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_116.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_648.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_116.svg -> ../html-full/inherit_graph_648.svg +absolute: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_26.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_114.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_26.svg -> ../html-full/inherit_graph_114.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FileIOError-members.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileIOError-members.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FileIOError-members.xhtml -> ../html-full/classgmx_1_1FileIOError-members.xhtml +absolute: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_5.xhtml -> ../../html-full/search/files_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_15.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_15.xhtml -> ../../html-full/search/classes_15.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_0.js -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_0.js +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_0.js -> ../../html-full/search/all_0.js +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_1.xhtml -> ../../html-full/search/pages_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_a.xhtml -> ../../html-full/search/functions_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_4.xhtml -> ../../html-full/search/pages_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_c.xhtml -> ../../html-full/search/groups_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_10.xhtml -> ../../html-full/search/typedefs_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_7.xhtml -> ../../html-full/search/related_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_4.xhtml -> ../../html-full/search/groups_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_1.xhtml -> 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_a.xhtml -> ../../html-full/search/groups_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_12.xhtml -> ../../html-full/search/all_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_2.xhtml -> ../../html-full/search/all_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_7.xhtml -> ../../html-full/search/typedefs_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_1a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_1a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_1a.xhtml -> ../../html-full/search/functions_1a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_9.xhtml -> ../../html-full/search/related_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_12.xhtml -> ../../html-full/search/typedefs_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_2.xhtml -> ../../html-full/search/pages_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_10.xhtml -> ../../html-full/search/files_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_8.xhtml -> ../../html-full/search/classes_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_6.xhtml -> ../../html-full/search/defines_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/nomatches.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/nomatches.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/nomatches.xhtml -> ../../html-full/search/nomatches.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_11.xhtml -> ../../html-full/search/enumvalues_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_12.xhtml -> ../../html-full/search/files_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_12.xhtml -> ../../html-full/search/enumvalues_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_18.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_18.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_18.xhtml -> ../../html-full/search/functions_18.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_6.xhtml -> ../../html-full/search/groups_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_14.xhtml -> ../../html-full/search/classes_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_b.xhtml -> ../../html-full/search/typedefs_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_6.xhtml -> ../../html-full/search/files_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_0.xhtml -> ../../html-full/search/pages_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_3.xhtml -> ../../html-full/search/groups_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_15.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_15.xhtml -> ../../html-full/search/functions_15.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_19.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_19.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_19.xhtml -> ../../html-full/search/all_19.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_2.xhtml -> ../../html-full/search/related_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/close.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/close.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/close.svg -> ../../html-full/search/close.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_5.xhtml -> ../../html-full/search/variables_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_11.xhtml -> ../../html-full/search/functions_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_f.xhtml -> ../../html-full/search/enums_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_b.xhtml -> ../../html-full/search/all_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search.js -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search.js +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search.js -> ../../html-full/search/search.js +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_9.xhtml -> ../../html-full/search/classes_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_5.xhtml -> ../../html-full/search/functions_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_e.xhtml -> ../../html-full/search/classes_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_e.xhtml -> ../../html-full/search/all_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_11.xhtml -> ../../html-full/search/variables_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_d.xhtml -> ../../html-full/search/defines_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_8.xhtml -> ../../html-full/search/pages_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_e.xhtml -> ../../html-full/search/enums_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_6.xhtml -> ../../html-full/search/related_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_f.xhtml -> ../../html-full/search/functions_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_6.xhtml -> ../../html-full/search/all_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_a.xhtml -> ../../html-full/search/pages_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_1.xhtml -> ../../html-full/search/functions_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_c.xhtml -> ../../html-full/search/defines_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_2.xhtml -> ../../html-full/search/files_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_4.xhtml -> ../../html-full/search/all_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_16.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_16.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_16.xhtml -> ../../html-full/search/all_16.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_5.xhtml -> ../../html-full/search/all_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_5.xhtml -> ../../html-full/search/enumvalues_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_e.xhtml -> ../../html-full/search/defines_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_7.xhtml -> ../../html-full/search/functions_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_b.xhtml -> ../../html-full/search/variables_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_13.xhtml -> ../../html-full/search/files_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/namespaces_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/namespaces_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/namespaces_0.xhtml -> ../../html-full/search/namespaces_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_a.xhtml -> ../../html-full/search/all_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_4.xhtml -> ../../html-full/search/classes_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_b.xhtml -> ../../html-full/search/related_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_13.xhtml -> ../../html-full/search/classes_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_f.xhtml -> ../../html-full/search/all_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_5.xhtml -> ../../html-full/search/related_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_11.xhtml -> ../../html-full/search/all_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_5.xhtml -> ../../html-full/search/defines_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_16.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_16.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_16.xhtml -> ../../html-full/search/functions_16.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_12.xhtml -> ../../html-full/search/enums_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_9.xhtml -> ../../html-full/search/all_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_5.xhtml -> ../../html-full/search/classes_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_c.xhtml -> ../../html-full/search/variables_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_4.xhtml -> ../../html-full/search/enums_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_10.xhtml -> ../../html-full/search/all_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_a.xhtml -> ../../html-full/search/related_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_6.xhtml -> ../../html-full/search/functions_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_3.xhtml -> ../../html-full/search/classes_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_10.xhtml -> ../../html-full/search/functions_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_1.xhtml -> ../../html-full/search/files_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_c.xhtml -> ../../html-full/search/files_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_7.xhtml -> ../../html-full/search/enums_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_c.xhtml -> ../../html-full/search/pages_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_19.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_19.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_19.xhtml -> ../../html-full/search/functions_19.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_f.xhtml -> ../../html-full/search/typedefs_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_a.xhtml -> ../../html-full/search/enums_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_e.xhtml -> ../../html-full/search/files_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search.css -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search.css +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search.css -> ../../html-full/search/search.css +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_7.xhtml -> ../../html-full/search/pages_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_a.xhtml -> ../../html-full/search/files_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_b.xhtml -> ../../html-full/search/pages_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_13.xhtml -> ../../html-full/search/enums_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_e.xhtml -> ../../html-full/search/groups_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_b.xhtml -> ../../html-full/search/classes_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_7.xhtml -> ../../html-full/search/variables_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_8.xhtml -> ../../html-full/search/typedefs_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_9.xhtml -> ../../html-full/search/enums_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_b.xhtml -> ../../html-full/search/groups_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_a.xhtml -> ../../html-full/search/classes_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_0.xhtml -> ../../html-full/search/classes_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_d.xhtml -> ../../html-full/search/all_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_15.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_15.xhtml -> ../../html-full/search/files_15.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_e.xhtml -> ../../html-full/search/variables_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_7.xhtml -> ../../html-full/search/enumvalues_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_4.xhtml -> ../../html-full/search/related_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_13.xhtml -> ../../html-full/search/variables_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_3.xhtml -> ../../html-full/search/enumvalues_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_8.xhtml -> ../../html-full/search/groups_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_14.xhtml -> ../../html-full/search/files_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_4.xhtml -> ../../html-full/search/defines_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_8.xhtml -> ../../html-full/search/functions_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_14.xhtml -> ../../html-full/search/functions_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_6.xhtml -> ../../html-full/search/classes_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_f.xhtml -> ../../html-full/search/files_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_d.xhtml -> ../../html-full/search/enumvalues_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_4.xhtml -> ../../html-full/search/files_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_1.xhtml -> ../../html-full/search/variables_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_8.xhtml -> ../../html-full/search/enumvalues_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_f.xhtml -> ../../html-full/search/enumvalues_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_3.xhtml -> ../../html-full/search/typedefs_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_4.xhtml -> ../../html-full/search/typedefs_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_0.xhtml -> ../../html-full/search/enumvalues_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_9.xhtml -> ../../html-full/search/functions_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_7.xhtml -> ../../html-full/search/classes_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_5.xhtml -> ../../html-full/search/typedefs_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_14.xhtml -> ../../html-full/search/enumvalues_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_c.xhtml -> ../../html-full/search/functions_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_17.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_17.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_17.xhtml -> ../../html-full/search/functions_17.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_7.xhtml -> ../../html-full/search/files_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_a.xhtml -> ../../html-full/search/enumvalues_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_d.xhtml -> ../../html-full/search/functions_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_9.xhtml -> ../../html-full/search/variables_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_3.xhtml -> ../../html-full/search/enums_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_9.xhtml -> ../../html-full/search/defines_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_d.xhtml -> ../../html-full/search/enums_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_1.xhtml -> ../../html-full/search/enums_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_c.xhtml -> ../../html-full/search/classes_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_8.xhtml -> ../../html-full/search/variables_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_14.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_14.xhtml -> ../../html-full/search/variables_14.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_a.xhtml -> ../../html-full/search/defines_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_f.xhtml -> ../../html-full/search/variables_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_11.xhtml -> ../../html-full/search/enums_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_12.xhtml -> ../../html-full/search/functions_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_f.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_f.xhtml -> ../../html-full/search/classes_f.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_10.xhtml -> ../../html-full/search/enumvalues_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_1.xhtml -> ../../html-full/search/related_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_d.xhtml -> ../../html-full/search/related_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_d.xhtml -> ../../html-full/search/typedefs_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_6.xhtml -> ../../html-full/search/enumvalues_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_3.xhtml -> ../../html-full/search/files_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_a.xhtml -> ../../html-full/search/typedefs_a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_5.xhtml -> ../../html-full/search/pages_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_1.xhtml -> ../../html-full/search/all_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_12.xhtml -> ../../html-full/search/variables_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_3.xhtml -> ../../html-full/search/functions_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_3.xhtml -> ../../html-full/search/all_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_d.xhtml -> ../../html-full/search/groups_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_0.xhtml -> ../../html-full/search/functions_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_0.xhtml -> ../../html-full/search/groups_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_1.xhtml -> ../../html-full/search/classes_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/mag_sel.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/mag_sel.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/mag_sel.svg -> ../../html-full/search/mag_sel.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_17.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_17.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_17.xhtml -> ../../html-full/search/all_17.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_6.xhtml -> ../../html-full/search/variables_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_6.xhtml -> ../../html-full/search/pages_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_12.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_12.xhtml -> ../../html-full/search/classes_12.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_d.xhtml -> ../../html-full/search/classes_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_8.xhtml -> ../../html-full/search/related_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_d.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_d.xhtml -> ../../html-full/search/variables_d.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_15.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_15.xhtml -> ../../html-full/search/variables_15.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_3.xhtml -> ../../html-full/search/related_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_c.xhtml -> ../../html-full/search/enums_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_6.xhtml -> ../../html-full/search/typedefs_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_4.xhtml -> ../../html-full/search/variables_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_1a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_1a.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_1a.xhtml -> ../../html-full/search/all_1a.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_9.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_9.xhtml -> ../../html-full/search/groups_9.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_0.xhtml -> ../../html-full/search/typedefs_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_8.xhtml -> ../../html-full/search/enums_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_7.xhtml -> ../../html-full/search/defines_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_7.xhtml -> ../../html-full/search/all_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_7.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_7.xhtml -> ../../html-full/search/groups_7.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_2.xhtml -> ../../html-full/search/groups_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_13.xhtml -> ../../html-full/search/all_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_c.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_c.xhtml -> ../../html-full/search/typedefs_c.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_8.xhtml -> ../../html-full/search/files_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_6.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_6.xhtml -> ../../html-full/search/enums_6.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_1.xhtml -> ../../html-full/search/typedefs_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_2.xhtml -> ../../html-full/search/enums_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_1b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_1b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_1b.xhtml -> ../../html-full/search/all_1b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_m.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_m.png +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_m.png -> ../../html-full/search/search_m.png +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_15.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_15.xhtml -> ../../html-full/search/all_15.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_0.xhtml -> ../../html-full/search/defines_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_10.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_10.xhtml -> ../../html-full/search/variables_10.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_r.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_r.png +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_r.png -> ../../html-full/search/search_r.png +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_4.xhtml -> ../../html-full/search/functions_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_15.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_15.xhtml -> ../../html-full/search/enumvalues_15.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_4.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_4.xhtml -> ../../html-full/search/enumvalues_4.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_b.xhtml -> ../../html-full/search/enums_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_5.xhtml -> ../../html-full/search/enums_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_13.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_13.xhtml -> ../../html-full/search/functions_13.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_2.xhtml -> ../../html-full/search/functions_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_5.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_5.xhtml -> ../../html-full/search/groups_5.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_e.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_e.xhtml -> ../../html-full/search/enumvalues_e.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_3.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_3.xhtml -> ../../html-full/search/variables_3.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_8.xhtml -> ../../html-full/search/defines_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_0.xhtml -> ../../html-full/search/variables_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_0.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_0.xhtml -> ../../html-full/search/enums_0.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_2.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_2.xhtml -> ../../html-full/search/enumvalues_2.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_b.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_b.xhtml -> ../../html-full/search/defines_b.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_11.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_11.xhtml -> ../../html-full/search/classes_11.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_1.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_1.xhtml -> ../../html-full/search/enumvalues_1.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_8.xhtml +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_8.xhtml -> ../../html-full/search/all_8.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_11.xhtml -> 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changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classPreprocessingBondAtomType-members.xhtml -> ../html-full/classPreprocessingBondAtomType-members.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1registerMdModuleNotification_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4-members.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1registerMdModuleNotification_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4-members.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1registerMdModuleNotification_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4-members.xhtml -> 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_189.svg -> ../html-full/inherit_graph_324.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_15.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_15.xhtml -> ../../html-full/search/all_15.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_2.xhtml -> ../../html-full/search/variables_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_6.xhtml -> ../../html-full/search/classes_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_5.xhtml -> ../../html-full/search/pages_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_0.xhtml -> ../../html-full/search/variables_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_a.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_a.xhtml -> ../../html-full/search/typedefs_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_12.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_12.xhtml -> ../../html-full/search/files_12.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_5.xhtml -> ../../html-full/search/functions_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_14.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_14.xhtml -> ../../html-full/search/classes_14.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_b.xhtml -> ../../html-full/search/defines_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_7.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_7.xhtml -> ../../html-full/search/all_7.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_12.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_12.xhtml -> ../../html-full/search/variables_12.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_9.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_9.xhtml -> ../../html-full/search/pages_9.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_m.png -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_m.png -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search_m.png -> ../../html-full/search/search_m.png -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_d.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_d.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_d.xhtml -> ../../html-full/search/classes_d.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_4.xhtml -changed: 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-> ../../html-full/search/files_13.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_11.xhtml -> ../../html-full/search/all_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_1.xhtml -> ../../html-full/search/typedefs_1.xhtml -absolute: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_c.xhtml -> ../../html-full/search/classes_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_3.xhtml -> ../../html-full/search/enumvalues_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_2.xhtml -> ../../html-full/search/related_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_b.xhtml -> ../../html-full/search/typedefs_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_f.xhtml -> ../../html-full/search/enumvalues_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_10.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_10.xhtml -> ../../html-full/search/functions_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_6.xhtml -> ../../html-full/search/typedefs_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_e.xhtml -> ../../html-full/search/variables_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_c.xhtml -> ../../html-full/search/files_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_0.js -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_0.js -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_0.js -> ../../html-full/search/all_0.js -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_1.xhtml -> ../../html-full/search/functions_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_5.xhtml -> ../../html-full/search/classes_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_e.xhtml -> ../../html-full/search/all_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_18.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_18.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_18.xhtml -> ../../html-full/search/all_18.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_a.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_a.xhtml -> ../../html-full/search/defines_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/namespaces_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/namespaces_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/namespaces_0.xhtml -> ../../html-full/search/namespaces_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_8.xhtml -> ../../html-full/search/all_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_8.xhtml -> ../../html-full/search/enums_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_15.xhtml -changed: 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_10.xhtml -> ../../html-full/search/enumvalues_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_11.xhtml -> ../../html-full/search/classes_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_b.xhtml -> ../../html-full/search/enumvalues_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_f.xhtml -> ../../html-full/search/files_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_9.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_9.xhtml -> ../../html-full/search/typedefs_9.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_4.xhtml -> ../../html-full/search/enumvalues_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_7.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_7.xhtml -> ../../html-full/search/classes_7.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_3.xhtml -> ../../html-full/search/variables_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_1.xhtml -> ../../html-full/search/groups_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_f.xhtml -> ../../html-full/search/typedefs_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_c.xhtml -> ../../html-full/search/pages_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_10.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_10.xhtml -> ../../html-full/search/all_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_0.xhtml -> ../../html-full/search/enums_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_17.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_17.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_17.xhtml -> ../../html-full/search/all_17.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_9.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_9.xhtml -> ../../html-full/search/files_9.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_15.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_15.xhtml -> ../../html-full/search/classes_15.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_c.xhtml -> ../../html-full/search/enumvalues_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_0.xhtml -> ../../html-full/search/all_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_15.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_15.xhtml -> ../../html-full/search/enumvalues_15.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_0.xhtml -> ../../html-full/search/related_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_1.xhtml -> ../../html-full/search/defines_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_5.xhtml -> ../../html-full/search/typedefs_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_2.xhtml -> ../../html-full/search/functions_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_11.xhtml -> ../../html-full/search/variables_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_5.xhtml -> ../../html-full/search/enumvalues_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_e.xhtml -> ../../html-full/search/typedefs_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_4.xhtml -> ../../html-full/search/enums_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_0.xhtml -> ../../html-full/search/groups_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_4.xhtml -> ../../html-full/search/defines_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_7.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_7.xhtml -> ../../html-full/search/defines_7.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_14.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_14.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_14.xhtml -> ../../html-full/search/enumvalues_14.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_b.xhtml -> ../../html-full/search/variables_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_15.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_15.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_15.xhtml -> ../../html-full/search/variables_15.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_5.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_5.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_5.xhtml -> ../../html-full/search/variables_5.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_3.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_3.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_3.xhtml -> ../../html-full/search/typedefs_3.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_18.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_18.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_18.xhtml -> ../../html-full/search/functions_18.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_f.xhtml -> ../../html-full/search/classes_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_0.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_0.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_0.xhtml -> ../../html-full/search/typedefs_0.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_8.xhtml -> ../../html-full/search/pages_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_9.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_9.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_9.xhtml -> ../../html-full/search/all_9.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enumvalues_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enumvalues_11.xhtml -> ../../html-full/search/enumvalues_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_12.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_12.xhtml -> ../../html-full/search/enums_12.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_6.xhtml -> ../../html-full/search/all_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_f.xhtml -> ../../html-full/search/functions_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/groups_a.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/groups_a.xhtml -> ../../html-full/search/groups_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_6.xhtml -> ../../html-full/search/files_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_b.xhtml -> ../../html-full/search/functions_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_13.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_13.xhtml -> ../../html-full/search/enums_13.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_1.xhtml -> ../../html-full/search/pages_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_4.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/related_4.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/related_4.xhtml -> ../../html-full/search/related_4.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_7.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_7.xhtml -> ../../html-full/search/files_7.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_7.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_7.xhtml -> ../../html-full/search/typedefs_7.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_c.xhtml -> ../../html-full/search/all_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_a.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_a.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_a.xhtml -> ../../html-full/search/classes_a.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_b.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_b.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_b.xhtml -> ../../html-full/search/classes_b.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_11.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_11.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_11.xhtml -> ../../html-full/search/enums_11.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_c.xhtml -> ../../html-full/search/functions_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/mag_sel.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/mag_sel.svg -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/mag_sel.svg -> ../../html-full/search/mag_sel.svg -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_12.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_12.xhtml -> ../../html-full/search/typedefs_12.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_6.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/defines_6.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_6.xhtml -> ../../html-full/search/defines_6.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/functions_8.xhtml -> ../../html-full/search/functions_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search.css -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search.css -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/search.css -> ../../html-full/search/search.css -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_12.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_12.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_12.xhtml -> ../../html-full/search/classes_12.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_e.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_e.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_e.xhtml -> ../../html-full/search/files_e.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_8.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/variables_8.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/variables_8.xhtml -> ../../html-full/search/variables_8.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/enums_10.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_10.xhtml -> ../../html-full/search/enums_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_1.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_1.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_1.xhtml -> ../../html-full/search/files_1.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_2.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/files_2.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/files_2.xhtml -> ../../html-full/search/files_2.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_f.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/all_f.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/all_f.xhtml -> ../../html-full/search/all_f.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_c.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_c.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_c.xhtml -> ../../html-full/search/typedefs_c.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_13.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/classes_13.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/classes_13.xhtml -> ../../html-full/search/classes_13.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_7.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/pages_7.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/pages_7.xhtml -> ../../html-full/search/pages_7.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_10.xhtml -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/typedefs_10.xhtml -changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/typedefs_10.xhtml -> ../../html-full/search/typedefs_10.xhtml -absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/enums_2.xhtml -> 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1PageAlignedAllocationPolicy-members.xhtml -> ../html-full/classgmx_1_1PageAlignedAllocationPolicy-members.xhtml +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__coll__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringInputStream__coll__graph.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringInputStream__coll__graph.svg -> ../html-full/classgmx_1_1StringInputStream__coll__graph.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ComputeGlobalsElement__coll__graph.svg -> 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/build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringInputStream__inherit__graph.svg -> classgmx_1_1StringInputStream__coll__graph.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CheckpointHelper__inherit__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CheckpointHelper__coll__graph.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CheckpointHelper__inherit__graph.svg -> classgmx_1_1CheckpointHelper__coll__graph.svg +absolute: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionStorage__inherit__graph.svg -> /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionStorage__coll__graph.svg +changed: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionStorage__inherit__graph.svg -> classgmx_1_1SelectionOptionStorage__coll__graph.svg +dangling: /build/reproducible-path/gromacs-2020.6/debian/gromacs-data/usr/share/doc/gromacs-data/COPYING -> copyright dh_testdir dh_testroot dh_installchangelogs -i @@ -138990,15 +139019,15 @@ dh_installdeb -a dh_md5sums -a dh_builddeb -a +dpkg-deb: building package 'gromacs' in '../gromacs_2020.6-2_i386.deb'. dpkg-deb: building package 'libgromacs5' in '../libgromacs5_2020.6-2_i386.deb'. -dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2020.6-2_i386.deb'. -dpkg-deb: building package 'libgromacs5-dbgsym' in '../libgromacs5-dbgsym_2020.6-2_i386.deb'. dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2020.6-2_i386.deb'. -dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2020.6-2_i386.deb'. -dpkg-deb: building package 'gromacs' in '../gromacs_2020.6-2_i386.deb'. dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2020.6-2_i386.deb'. -dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2020.6-2_i386.deb'. dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2020.6-2_i386.deb'. +dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2020.6-2_i386.deb'. +dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2020.6-2_i386.deb'. +dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2020.6-2_i386.deb'. +dpkg-deb: building package 'libgromacs5-dbgsym' in '../libgromacs5-dbgsym_2020.6-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gromacs_2020.6-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -139006,12 +139035,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/8498/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/57970 and its subdirectories -I: Current time: Tue Feb 11 16:57:41 -12 2025 -I: pbuilder-time-stamp: 1739336261 +I: removing directory /srv/workspace/pbuilder/8498 and its subdirectories +I: Current time: Thu Jan 11 13:44:37 +14 2024 +I: pbuilder-time-stamp: 1704930277