Diff of the two buildlogs:
--
--- b1/build.log 2024-01-13 03:08:21.325085284 +0000
+++ b2/build.log 2024-01-13 03:15:31.145744943 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Thu Feb 13 21:29:21 -12 2025
-I: pbuilder-time-stamp: 1739525361
+I: Current time: Sat Jan 13 17:08:27 +14 2024
+I: pbuilder-time-stamp: 1705115307
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
@@ -18,7 +18,7 @@
I: copying [./htslib_1.11-4.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/tmp/dpkg-verify-sig.FUqskvvb/trustedkeys.kbx': General error
+gpgv: keyblock resource '/tmp/dpkg-verify-sig.NhNeiOVh/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 2 15:28:47 2021
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
@@ -36,51 +36,82 @@
dpkg-source: info: applying 273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/113015/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos2-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Jan 13 03:08 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 '
- DISTRIBUTION='bullseye'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.1.4(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7 '
+ DIRSTACK=()
+ DISTRIBUTION=bullseye
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='ab8fd2d20a864710aab63c43414282d4'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='113015'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=3c966b3649b44b7999c51acb75f6d2b1
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=12124
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/pbuilderrc_SvLC --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/b1 --logfile b1/build.log htslib_1.11-4.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://85.184.249.68:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/pbuilderrc_eFDr --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/b2 --logfile b2/build.log htslib_1.11-4.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://78.137.99.97:3128
I: uname -a
- Linux ionos6-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux
I: ls -l /bin
total 5776
-rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash
@@ -140,7 +171,7 @@
-rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 125036 Dec 22 2018 sed
- lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash
+ lrwxrwxrwx 1 root root 9 Jan 13 03:08 sh -> /bin/bash
-rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 83880 Sep 22 2020 stty
-rwsr-xr-x 1 root root 79396 Jan 20 2022 su
@@ -166,7 +197,7 @@
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
-I: user script /srv/workspace/pbuilder/113015/tmp/hooks/D02_print_environment finished
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -264,7 +295,7 @@
Get: 46 http://deb.debian.org/debian bullseye/main i386 liblzma-dev i386 5.2.5-2.1~deb11u1 [240 kB]
Get: 47 http://deb.debian.org/debian bullseye/main i386 libssl-dev i386 1.1.1w-0+deb11u1 [1852 kB]
Get: 48 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB]
-Fetched 22.9 MB in 0s (81.2 MB/s)
+Fetched 22.9 MB in 2s (10.9 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17763 files and directories currently installed.)
@@ -472,7 +503,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/htslib-1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.11-4_source.changes
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for bullseye
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/htslib-1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.11-4_source.changes
dpkg-buildpackage: info: source package htslib
dpkg-buildpackage: info: source version 1.11-4
dpkg-buildpackage: info: source distribution unstable
@@ -486,7 +521,7 @@
make[1]: Entering directory '/build/reproducible-path/htslib-1.11'
dh_auto_clean
install -d /build/reproducible-path/htslib-1.11/debian/.debhelper/generated/_source/home
- make -j16 distclean
+ make -j7 distclean
make[2]: Entering directory '/build/reproducible-path/htslib-1.11'
rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt
rm -f libhts.so libhts.so.*
@@ -603,7 +638,7 @@
LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \
PACKAGE_VERSION="1.11-4" \
libdir=/usr/lib/i386-linux-gnu
- make -j16 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu
+ make -j7 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu
make[2]: Entering directory '/build/reproducible-path/htslib-1.11'
gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c
gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c
@@ -715,9 +750,9 @@
sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk
sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc
gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c
+gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/string_alloc.pico plugin.pico -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hts_endian test/hts_endian.o -ldeflate -llzma -lbz2 -lz -lm -ldl
gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -llzma -lbz2 -lz -lm -ldl
-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/string_alloc.pico plugin.pico -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o plugin.o
ranlib libhts.a
gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
@@ -739,8 +774,8 @@
gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
ln -sf libhts.so libhts.so.3
+gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -llzma -lbz2 -lz -lm -ldl -lcurl -lpthread
gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread
gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -llzma -lbz2 -lz -lm -ldl -lcrypto -lpthread
@@ -760,7 +795,7 @@
if find . -name "FAIL*" > /dev/null ; then \
for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \
fi
- make -j16 test VERBOSE=1 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu
+ make -j7 test VERBOSE=1 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu
make[2]: Entering directory '/build/reproducible-path/htslib-1.11'
test/hts_endian
test/test_kfunc
@@ -843,139 +878,139 @@
bgzip -b -I 4 threads: .. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 0 -x /tmp/AfpkuAgc_l/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 0 -x /tmp/o4gnzqWMBj/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -C -x /tmp/AfpkuAgc_l/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.cram
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -C -x /tmp/o4gnzqWMBj/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.cram
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index /tmp/AfpkuAgc_l/index.cram
+ /build/reproducible-path/htslib-1.11/test/test_index /tmp/o4gnzqWMBj/index.cram
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.bcf
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.bcf
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bcf
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bcf
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/tabix /tmp/AfpkuAgc_l/index.vcf.gz##idx##/tmp/AfpkuAgc_l/index.vcf.gz.tbi 1:10000060-10000060
+ /build/reproducible-path/htslib-1.11/tabix /tmp/o4gnzqWMBj/index.vcf.gz##idx##/tmp/o4gnzqWMBj/index.vcf.gz.tbi 1:10000060-10000060
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 0 -x /tmp/AfpkuAgc_l/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 0 -x /tmp/o4gnzqWMBj/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.bam
+ /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.bam
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.sam.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.sam.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -C -x /tmp/AfpkuAgc_l/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.cram
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -C -x /tmp/o4gnzqWMBj/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.cram
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index /tmp/AfpkuAgc_l/index.cram
+ /build/reproducible-path/htslib-1.11/test/test_index /tmp/o4gnzqWMBj/index.cram
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.bcf
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.bcf
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bcf
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bcf
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/AfpkuAgc_l/index.vcf.gz
+ /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/o4gnzqWMBj/index.vcf.gz
.. ok
test_index:
- /build/reproducible-path/htslib-1.11/tabix /tmp/AfpkuAgc_l/index.vcf.gz##idx##/tmp/AfpkuAgc_l/index.vcf.gz.tbi 1:10000060-10000060
+ /build/reproducible-path/htslib-1.11/tabix /tmp/o4gnzqWMBj/index.vcf.gz##idx##/tmp/o4gnzqWMBj/index.vcf.gz.tbi 1:10000060-10000060
.. ok
test_view testing multi-ref CRAM modes:
@@ -3060,9 +3095,9 @@
.. ok
test_vcf_api:
- /build/reproducible-path/htslib-1.11/test/test-vcf-api /tmp/AfpkuAgc_l/test-vcf-api.bcf
+ /build/reproducible-path/htslib-1.11/test/test-vcf-api /tmp/o4gnzqWMBj/test-vcf-api.bcf
[E::bcf_index_build3] TBI indices for BCF files are not supported
-[E::idx_find_and_load] Could not retrieve index file for '/tmp/AfpkuAgc_l/test-vcf-api.bcf'
+[E::idx_find_and_load] Could not retrieve index file for '/tmp/o4gnzqWMBj/test-vcf-api.bcf'
.. ok
test_bcf2vcf:
@@ -3070,7 +3105,7 @@
.. ok
test_vcf_sweep:
- /build/reproducible-path/htslib-1.11/test/test-vcf-sweep /tmp/AfpkuAgc_l/test-vcf-api.bcf
+ /build/reproducible-path/htslib-1.11/test/test-vcf-sweep /tmp/o4gnzqWMBj/test-vcf-api.bcf
.. ok
test_vcf_various:
@@ -3090,43 +3125,43 @@
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 493737710
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 501059974
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1567990729
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 116752042
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 47965804
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1375153075
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1493897368
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1692094740
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 770432338
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 556819428
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 668822764
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 819463073
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1512378202
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 231505510
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1646354548
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 555755195
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1019229230
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1573826449
.. ok
test-bcf-sr:
- /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 533240866
+ /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1083054300
.. ok
test_command:
@@ -3134,15 +3169,15 @@
.. ok
test_convert_padded_header:
- /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/AfpkuAgc_l/headernul0.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/o4gnzqWMBj/headernul0.bam
.. ok
test_convert_padded_header:
- /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/AfpkuAgc_l/headernul1.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/o4gnzqWMBj/headernul1.bam
.. ok
test_convert_padded_header:
- /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/AfpkuAgc_l/headernul678.bam
+ /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/o4gnzqWMBj/headernul678.bam
.. ok
test_rebgzip: Alternate zlib/deflate library detected
@@ -3197,7 +3232,7 @@
failed .. 0
make[2]: Leaving directory '/build/reproducible-path/htslib-1.11'
- rm -fr -- /tmp/dh-xdg-rundir-lTLMOmmu
+ rm -fr -- /tmp/dh-xdg-rundir-jO6sc84M
make[1]: Leaving directory '/build/reproducible-path/htslib-1.11'
rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log
debian/rules override_dh_auto_test-indep
@@ -3221,7 +3256,7 @@
PACKAGE_VERSION="1.11-4" \
libdir=/usr/lib/i386-linux-gnu
install -d /build/reproducible-path/htslib-1.11/debian/tmp
- make -j16 install DESTDIR=/build/reproducible-path/htslib-1.11/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu
+ make -j7 install DESTDIR=/build/reproducible-path/htslib-1.11/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu
make[2]: Entering directory '/build/reproducible-path/htslib-1.11'
mkdir -p -m 755 /build/reproducible-path/htslib-1.11/debian/tmp/usr/bin /build/reproducible-path/htslib-1.11/debian/tmp/usr/include /build/reproducible-path/htslib-1.11/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/i386-linux-gnu /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig
if test -n "/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.11/debian/tmp/htslib; fi
@@ -3302,12 +3337,12 @@
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/build/reproducible-path/htslib-1.11'
dh_installchangelogs NEWS
+ install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian
+ install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog
install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian
install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog
install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian
install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog
- install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian
- install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog
install -p -m0644 debian/changelog debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian
install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog
make[1]: Leaving directory '/build/reproducible-path/htslib-1.11'
@@ -3320,25 +3355,25 @@
install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1
man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5
man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/sam.5
- man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/vcf.5
man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7
- man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1
man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/htsfile.1
+ man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1
+ man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/vcf.5
man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1
- mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5
- chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5
mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5
chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5
- mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5
- chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5
- mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7
- chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7
- mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1
- chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1
mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1
chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1
+ mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5
+ chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5
mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1
chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1
+ mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1
+ chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1
+ mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5
+ chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5
+ mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7
+ chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7
dh_lintian
install -d debian/htslib-test/usr/share/lintian/overrides
install -p -m0644 debian/htslib-test.lintian-overrides debian/htslib-test/usr/share/lintian/overrides/htslib-test
@@ -3354,18 +3389,18 @@
ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz
dh_strip_nondeterminism
dh_compress
+ cd debian/htslib-test
cd debian/libhts3
cd debian/libhts-dev
- cd debian/htslib-test
cd debian/tabix
- chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7
chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian
- chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian
chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1
- gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7
+ chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian
+ chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7
gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian
gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian
gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1
+ gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7
cd '/build/reproducible-path/htslib-1.11'
cd '/build/reproducible-path/htslib-1.11'
cd '/build/reproducible-path/htslib-1.11'
@@ -3378,25 +3413,25 @@
find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
- find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
+ find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
- find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name simple_test_driver.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/build/reproducible-path/htslib-1.11'
rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log
@@ -3419,10 +3454,10 @@
make[1]: Entering directory '/build/reproducible-path/htslib-1.11'
# This is apparently important for the interpretation by ldc2 in sambamba
dh_strip -Xlibhts.a
- install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b
- objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b/f94b62cfa420cdbd0c9f6521965c11cb53f156.debug
install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5
objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/53a7bba9c3edd87daf607e9a2c6612d3fa433f.debug
+ install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b
+ objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b/f94b62cfa420cdbd0c9f6521965c11cb53f156.debug
chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/53a7bba9c3edd87daf607e9a2c6612d3fa433f.debug
strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile
objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/53a7bba9c3edd87daf607e9a2c6612d3fa433f.debug debian/tabix/usr/bin/htsfile
@@ -3441,27 +3476,27 @@
chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/72/a6656120de41c8f0ce2c2e3fed48892a2da64a.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so
objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/72/a6656120de41c8f0ce2c2e3fed48892a2da64a.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so
- install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e
- objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug
- chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug
- strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so
- objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so
install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22
objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22/eb0fc19a7751073d9eda7c53aff44329c542b1.debug
chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22/eb0fc19a7751073d9eda7c53aff44329c542b1.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so
objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22/eb0fc19a7751073d9eda7c53aff44329c542b1.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so
+ chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug
+ strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix
+ install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e
+ objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug
+ objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug debian/tabix/usr/bin/tabix
+ chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so
+ objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so
install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz
+ install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61
+ objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug
rm -fr debian/libhts3/usr/lib/debug/.dwz
- chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug
- strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix
rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug
install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc
ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym
- objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug debian/tabix/usr/bin/tabix
- install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61
- objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug
chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug
strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip
objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug debian/tabix/usr/bin/bgzip
@@ -3482,7 +3517,7 @@
rm -f debian/libhts-dev/DEBIAN/shlibs
rm -f debian/tabix/DEBIAN/shlibs
dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so
+ dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so
install -d debian/tabix/DEBIAN
dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip
dh_installdeb
@@ -3490,12 +3525,12 @@
install -d debian/libhts-dev/DEBIAN
install -d debian/htslib-test/DEBIAN
dh_gencontrol
- echo misc:Depends= >> debian/libhts-dev.substvars
- echo misc:Pre-Depends= >> debian/libhts-dev.substvars
- dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev
echo misc:Depends= >> debian/htslib-test.substvars
echo misc:Pre-Depends= >> debian/htslib-test.substvars
dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test
+ echo misc:Depends= >> debian/libhts-dev.substvars
+ echo misc:Pre-Depends= >> debian/libhts-dev.substvars
+ dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev
echo misc:Depends= >> debian/libhts3.substvars
echo misc:Pre-Depends= >> debian/libhts3.substvars
install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN
@@ -3504,40 +3539,40 @@
echo misc:Pre-Depends= >> debian/tabix.substvars
install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN
dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=6181a5163a7add8c25ece260135727cc38f153f5 8aa4dc10705d8e8b7f00ac0e11c3e4a5c97b3533 b553a7bba9c3edd87daf607e9a2c6612d3fa433f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
- chmod 0644 -- debian/libhts-dev/DEBIAN/control
chmod 0644 -- debian/htslib-test/DEBIAN/control
+ chmod 0644 -- debian/libhts-dev/DEBIAN/control
chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control
dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3
chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix
- chmod 0644 -- debian/libhts3/DEBIAN/control
chmod 0644 -- debian/tabix/DEBIAN/control
+ chmod 0644 -- debian/libhts3/DEBIAN/control
dh_md5sums
cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
- cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+ cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/libhts3/DEBIAN/md5sums
chmod 0644 -- debian/tabix/DEBIAN/md5sums
- cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
- chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums
+ cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums
- chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums
chmod 0644 -- debian/htslib-test/DEBIAN/md5sums
+ chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums
+ chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --root-owner-group --build debian/libhts3 ..
- dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/libhts-dev ..
dpkg-deb --root-owner-group --build debian/htslib-test ..
- dpkg-deb --root-owner-group --build debian/tabix ..
+ dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root ..
-dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_i386.deb'.
+ dpkg-deb --root-owner-group --build debian/tabix ..
+dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-4_i386.deb'.
+dpkg-deb: building package 'htslib-test' in '../htslib-test_1.11-4_all.deb'.
dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.11-4_i386.deb'.
+dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_i386.deb'.
dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.11-4_i386.deb'.
-dpkg-deb: building package 'htslib-test' in '../htslib-test_1.11-4_all.deb'.
dpkg-deb: building package 'tabix' in '../tabix_1.11-4_i386.deb'.
-dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-4_i386.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../htslib_1.11-4_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -3546,12 +3581,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/12124/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/113015 and its subdirectories
-I: Current time: Thu Feb 13 21:31:18 -12 2025
-I: pbuilder-time-stamp: 1739525478
+I: removing directory /srv/workspace/pbuilder/12124 and its subdirectories
+I: Current time: Sat Jan 13 17:15:28 +14 2024
+I: pbuilder-time-stamp: 1705115728