Diff of the two buildlogs:
--
--- b1/build.log 2021-07-19 14:10:19.959539708 +0000
+++ b2/build.log 2021-07-19 14:10:52.202328320 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Mon Jul 19 02:03:38 -12 2021
-I: pbuilder-time-stamp: 1626703418
+I: Current time: Mon Aug 22 10:33:21 +14 2022
+I: pbuilder-time-stamp: 1661114001
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
@@ -17,8 +17,8 @@
I: copying [./libgo-perl_0.15-9.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/tmp/dpkg-verify-sig.sHKyqJhl/trustedkeys.kbx': General error
-gpgv: Signature made Sat Jan 9 03:39:52 2021 -12
+gpgv: keyblock resource '/tmp/dpkg-verify-sig.qhAHQaHf/trustedkeys.kbx': General error
+gpgv: Signature made Sun Jan 10 05:39:52 2021 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
@@ -36,137 +36,171 @@
dpkg-source: info: applying spelling2.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/14639/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/42342/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos16-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/42342/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/42342/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10'
- DISTRIBUTION=''
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.1.4(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18'
+ DIRSTACK=()
+ DISTRIBUTION=
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='f64519442f384fbf9b6b3e845a94a776'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='14639'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=f04d24d0deb44b0fa934d953b9db2d66
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=42342
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.o3fSRjKQfG/pbuilderrc_3VcA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.o3fSRjKQfG/b1 --logfile b1/build.log libgo-perl_0.15-9.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://78.137.99.97:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.o3fSRjKQfG/pbuilderrc_Bmiw --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.o3fSRjKQfG/b2 --logfile b2/build.log --extrapackages usrmerge libgo-perl_0.15-9.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://85.184.249.68:3128
I: uname -a
- Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux
+ Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux
I: ls -l /bin
- total 5784
- -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash
- -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2
- -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
- -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2
- -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover
- lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
- -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat
- -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp
- -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod
- -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown
- -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp
- -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash
- -rwxr-xr-x 1 root root 124904 Sep 22 2020 date
- -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd
- -rwxr-xr-x 1 root root 100752 Sep 22 2020 df
- -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir
- -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg
- lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo
- -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 false
- -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
- -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt
- -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount
- -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep
- -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
- -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
- -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip
- -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname
- -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln
- -rwxr-xr-x 1 root root 55572 Feb 7 2020 login
- -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls
- -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk
- -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir
- -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod
- -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp
- -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more
- -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount
- -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint
- -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv
- lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd
- lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash
- -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink
- -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm
- -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir
- -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts
- -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed
- lrwxrwxrwx 1 root root 4 Jul 17 21:27 sh -> dash
- -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep
- -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty
- -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su
- -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync
- -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar
- -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile
- -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 true
- -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server
- -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount
- -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname
- -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
- -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir
- -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl
- lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
- -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
- -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
- -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
- -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
- -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
- -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
- -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
- -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
- -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
-I: user script /srv/workspace/pbuilder/14639/tmp/hooks/D02_print_environment finished
+ total 5776
+ -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash
+ -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2
+ -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep
+ -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2
+ -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover
+ lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore
+ -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat
+ -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp
+ -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod
+ -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown
+ -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp
+ -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash
+ -rwxr-xr-x 1 root root 124904 Sep 23 2020 date
+ -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd
+ -rwxr-xr-x 1 root root 100752 Sep 23 2020 df
+ -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir
+ -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo
+ -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 false
+ -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep
+ -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt
+ -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount
+ -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep
+ -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip
+ -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe
+ -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip
+ -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname
+ -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln
+ -rwxr-xr-x 1 root root 55572 Feb 8 2020 login
+ -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls
+ -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk
+ -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir
+ -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod
+ -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp
+ -rwxr-xr-x 1 root root 58920 Feb 8 2021 more
+ -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount
+ -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint
+ -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd
+ lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash
+ -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink
+ -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm
+ -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir
+ -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts
+ -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed
+ lrwxrwxrwx 1 root root 4 Aug 22 10:33 sh -> bash
+ lrwxrwxrwx 1 root root 4 Aug 21 05:46 sh.distrib -> dash
+ -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep
+ -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty
+ -rwsr-xr-x 1 root root 79396 Feb 8 2021 su
+ -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync
+ -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar
+ -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile
+ -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 true
+ -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server
+ -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount
+ -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname
+ -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress
+ -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir
+ -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl
+ lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat
+ -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp
+ -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff
+ -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep
+ -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep
+ -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce
+ -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep
+ -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless
+ -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore
+ -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew
+I: user script /srv/workspace/pbuilder/42342/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -290,7 +324,7 @@
Get: 72 http://deb.debian.org/debian bullseye/main i386 libxml-writer-perl all 0.900-1 [29.9 kB]
Get: 73 http://deb.debian.org/debian bullseye/main i386 rename all 1.13-1 [18.0 kB]
Get: 74 http://deb.debian.org/debian bullseye/main i386 xsltproc i386 1.1.34-4 [124 kB]
-Fetched 25.7 MB in 6s (4274 kB/s)
+Fetched 25.7 MB in 3s (10.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19675 files and directories currently installed.)
@@ -618,8 +652,44 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following additional packages will be installed:
+ libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl
+The following NEW packages will be installed:
+ libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge
+0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
+Need to get 59.5 kB of archives.
+After this operation, 157 kB of additional disk space will be used.
+Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B]
+Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B]
+Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB]
+Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 59.5 kB in 0s (4184 kB/s)
+Selecting previously unselected package libnumber-compare-perl.
+(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 24092 files and directories currently installed.)
+Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ...
+Unpacking libnumber-compare-perl (0.03-1.1) ...
+Selecting previously unselected package libtext-glob-perl.
+Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ...
+Unpacking libtext-glob-perl (0.11-1) ...
+Selecting previously unselected package libfile-find-rule-perl.
+Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ...
+Unpacking libfile-find-rule-perl (0.34-1) ...
+Selecting previously unselected package usrmerge.
+Preparing to unpack .../archives/usrmerge_25_all.deb ...
+Unpacking usrmerge (25) ...
+Setting up libtext-glob-perl (0.11-1) ...
+Setting up libnumber-compare-perl (0.03-1.1) ...
+Setting up libfile-find-rule-perl (0.34-1) ...
+Setting up usrmerge (25) ...
+The system has been successfully converted.
+Processing triggers for man-db (2.9.4-2) ...
+Not building database; man-db/auto-update is not 'true'.
I: Building the package
-I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
+I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package libgo-perl
dpkg-buildpackage: info: source version 0.15-9
dpkg-buildpackage: info: source distribution unstable
@@ -641,111 +711,111 @@
Writing Makefile for GO
Writing MYMETA.yml and MYMETA.json
dh_auto_build
- make -j10
+ make -j18
make[1]: Entering directory '/build/libgo-perl-0.15'
-cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm
-cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm
-cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm
-cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm
-cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm
-cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm
cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm
-cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm
-cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm
-cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm
-cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm
-cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm
-cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm
-cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm
-cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm
-cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm
-cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm
cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm
-cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm
-cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm
-cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm
-cp GO/Basic.pm blib/lib/GO/Basic.pm
+cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm
+cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm
cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm
+cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm
+cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm
+cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm
cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm
-cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm
-cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm
+cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm
cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm
+cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm
+cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm
+cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm
+cp GO/Basic.pm blib/lib/GO/Basic.pm
+cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm
+cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm
+cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm
+cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm
cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm
-cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm
-cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm
-cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm
-cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm
-cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm
-cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm
-cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm
-cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm
+cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm
cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm
+cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm
+cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm
+cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm
+cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm
cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm
-cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm
+cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm
+cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm
+cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm
+cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm
+cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm
+cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm
+cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm
+cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm
+cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm
+cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm
+cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm
cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm
-cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm
+cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm
cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm
-cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm
-cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm
-cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm
-cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm
-cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm
+cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm
+cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm
cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm
-cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm
-cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm
-cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm
-cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm
-cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm
-cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm
-cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm
-cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm
-cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm
-cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm
-cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm
cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm
+cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm
cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm
-cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm
cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm
-cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm
-cp GO/Parser.pm blib/lib/GO/Parser.pm
-cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm
-cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm
cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm
-cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm
-cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm
-cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm
-cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm
-cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm
+cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm
+cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm
+cp GO/Parser.pm blib/lib/GO/Parser.pm
+cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm
+cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm
cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm
cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm
+cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm
+cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm
+cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm
+cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm
+cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm
+cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm
+cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm
+cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm
+cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm
cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm
+cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm
+cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm
+cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm
+cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm
+cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm
cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm
-cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm
-cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm
-cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm
+cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm
+cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm
+cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm
cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm
+cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm
+cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm
+cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm
+cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm
+cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm
+cp go-perl.pod blib/lib/go-perl.pod
+cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl
+cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl
+cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl
+cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl
+cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl
+cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm
cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl
+cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl
+cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm
+cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl
+cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl
+cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm
cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl
-cp GO/Utils.pm blib/lib/GO/Utils.pm
cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm
-cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm
-cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl
-cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl
-cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl
+cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm
+cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm
+cp GO/Utils.pm blib/lib/GO/Utils.pm
cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl
+cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl
cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl
-cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm
cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl
-cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl
-cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl
-cp go-perl.pod blib/lib/go-perl.pod
-cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl
-cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl
-cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl
-cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm
-cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm
-cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl
-cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm
cp scripts/go-apply-xslt blib/script/go-apply-xslt
cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl
cp scripts/go-export-graph.pl blib/script/go-export-graph.pl
@@ -757,20 +827,20 @@
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl
cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl
cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl
-cp scripts/go2chadoxml blib/script/go2chadoxml
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml
+cp scripts/go2chadoxml blib/script/go2chadoxml
cp scripts/go2error_report blib/script/go2error_report
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report
cp scripts/go2fmt.pl blib/script/go2fmt.pl
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report
cp scripts/go2godb_prestore blib/script/go2godb_prestore
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore
cp scripts/go2obo blib/script/go2obo
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo
cp scripts/go2obo_html blib/script/go2obo_html
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html
cp scripts/go2obo_text blib/script/go2obo_text
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text
@@ -781,8 +851,8 @@
cp scripts/go2pathlist blib/script/go2pathlist
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist
cp scripts/go2prolog blib/script/go2prolog
-cp scripts/go2rdf blib/script/go2rdf
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog
+cp scripts/go2rdf blib/script/go2rdf
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf
cp scripts/go2rdfxml blib/script/go2rdfxml
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml
@@ -791,10 +861,10 @@
cp scripts/go2sxpr blib/script/go2sxpr
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr
cp scripts/go2tbl blib/script/go2tbl
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl
cp scripts/go2text_html blib/script/go2text_html
-"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl
cp scripts/go2xml blib/script/go2xml
+"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml
cp scripts/map2slim blib/script/map2slim
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim
@@ -803,14 +873,14 @@
Manifying 33 pod documents
make[1]: Leaving directory '/build/libgo-perl-0.15'
dh_auto_test
- make -j10 test TEST_VERBOSE=1
+ make -j18 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libgo-perl-0.15'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............
1..6
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:00 2021
-# Current time GMT: Mon Jul 19 14:10:00 2021
+# Current time local: Mon Aug 22 10:33:45 2022
+# Current time GMT: Sun Aug 21 20:33:45 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -822,8 +892,8 @@
t/t020paths.t ............
1..7
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:00 2021
-# Current time GMT: Mon Jul 19 14:10:00 2021
+# Current time local: Mon Aug 22 10:33:45 2022
+# Current time GMT: Sun Aug 21 20:33:45 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -836,8 +906,8 @@
t/t030detecterror.t ......
1..4
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:00 2021
-# Current time GMT: Mon Jul 19 14:10:00 2021
+# Current time local: Mon Aug 22 10:33:45 2022
+# Current time GMT: Sun Aug 21 20:33:45 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -879,234 +949,234 @@
t/t050oboformat.t ........
1..6
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:00 2021
-# Current time GMT: Mon Jul 19 14:10:00 2021
+# Current time local: Mon Aug 22 10:33:45 2022
+# Current time GMT: Sun Aug 21 20:33:45 2022
# Using Test.pm version 1.31
ok 1
ok 2
-ROOT: cellular_component
ROOT: molecular_function
ROOT: biological_process
+ROOT: cellular_component
ok 3
ok 4
+EDGE|GO:0003907|GO:0008578|is_a
+EDGE|GO:0003907|GO:0003686|is_a
+EDGE|GO:0003689|GO:0003687|is_a
+EDGE|GO:0003688|GO:0003687|is_a
+EDGE|GO:0003687|GO:0003677|is_a
+EDGE|GO:0008159|GO:0003711|is_a
+EDGE|GO:0003824|GO:0003674|is_a
+EDGE|GO:0003676|GO:0003674|is_a
+EDGE|GO:0003707|GO:0004879|is_a
+EDGE|GO:0003707|GO:0003706|is_a
+EDGE|GO:0003697|GO:0003677|is_a
+EDGE|GO:0003689|GO:0003687|is_a
+EDGE|GO:0000299|GO:0005624|is_a
+EDGE|GO:0003709|GO:0003700|is_a
+EDGE|GO:0003694|GO:0003677|is_a
+EDGE|GO:0003684|GO:0003677|is_a
+EDGE|GO:0000217|GO:0003677|is_a
+EDGE|GO:0007636|GO:0007630|is_a
+EDGE|GO:0007636|GO:0007635|is_a
+EDGE|GO:0003904|GO:0003824|is_a
+EDGE|GO:0003904|GO:0003913|is_a
+EDGE|GO:0003721|GO:0003964|is_a
+EDGE|GO:0003721|GO:0003720|is_a
+EDGE|GO:0003704|GO:0003702|is_a
+EDGE|GO:0003700|GO:0003677|is_a
+EDGE|GO:0003694|GO:0003677|is_a
+EDGE|GO:0003687|GO:0003677|is_a
+EDGE|GO:0003692|GO:0003677|is_a
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EDGE|GO:0000144|GO:0000142|part_of
-EDGE|GO:0000142|GO:0030480|is_a
EDGE|GO:0000142|GO:0005935|part_of
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total parent rels:118
total (both ways):218
ok 5
@@ -1115,118 +1185,118 @@
t/t060oboformat2.t .......
1..36
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:01 2021
-# Current time GMT: Mon Jul 19 14:10:01 2021
+# Current time local: Mon Aug 22 10:33:45 2022
+# Current time GMT: Sun Aug 21 20:33:45 2022
# Using Test.pm version 1.31
ok 1
Parsing: ./t/data/go-truncated.obo
ok 2
-ROOT: 1-phosphatidylinositol-4-phosphate kinase
-ROOT: Part of
ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase
+ROOT: 1-phosphatidylinositol-4-phosphate kinase
ROOT: root
+ROOT: Part of
TERMS: 29
-SYNS:drinking|eating
-DEFXREFS:GO:mah
-EDGE|GO:0042756|GO:0007631|is_a
-EDGE|GO:0042595|GO:0007631|is_a
-EDGE|GO:0008343|GO:0007631|is_a
-EDGE|GO:0042755|GO:0007631|is_a
-EDGE|GO:0007631|GO:0007610|is_a
-DEFXREFS:MGI:dph|MEDLINE:99119440
-EDGE|GO:0001662|GO:0007610|is_a
-EDGE|GO:0001662|GO:0042596|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0048148|GO:0030534|is_a
-EDGE|GO:0048148|GO:0042220|is_a
-DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl
-EDGE|GO:0042756|GO:0007631|is_a
-DEFXREFS:GO:mah
-EDGE|GO:0008343|GO:0007631|is_a
-EDGE|GO:0008343|GO:0030534|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0048150|GO:0030534|is_a
-EDGE|GO:0048150|GO:0045472|is_a
-DEFXREFS:GO:ai
-EDGE|GO:0007630|GO:0008344|is_a
-EDGE|GO:0007628|GO:0008344|is_a
-EDGE|GO:0007629|GO:0008344|is_a
-EDGE|GO:0008344|GO:0030534|is_a
-EDGE|GO:0008344|GO:0007626|is_a
-SYNS:class I PI3K|fake synonym|FAKE:0001
-EXACT SYNS:fake synonym
-COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'.
-DEFXREFS:GO:curators|EC:2.7.1.68
-DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007628|GO:0008344|is_a
-DEFXREFS:GO:curators
-EDGE|GO:0042048|GO:0007635|is_a
-EDGE|GO:0007636|GO:0007635|is_a
-EDGE|GO:0007637|GO:0007635|is_a
-EDGE|GO:0007635|GO:0007610|is_a
-DEFXREFS:ISBN:01928006X|GO:jl
-EDGE|GO:0043050|GO:0042755|is_a
-EDGE|GO:0042755|GO:0007631|is_a
-DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk
-EDGE|GO:0007637|GO:0007635|is_a
DEFXREFS:GO:jic
EDGE|GO:0048149|GO:0045471|is_a
EDGE|GO:0048149|GO:0030534|is_a
-DEFXREFS:GO:curators
+DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk
+EDGE|GO:0007637|GO:0007635|is_a
+DEFXREFS:MGI:dph|MEDLINE:99119440
+EDGE|GO:0001662|GO:0042596|is_a
+EDGE|GO:0001662|GO:0007610|is_a
+DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk
+EDGE|GO:0048266|GO:0048265|is_a
+EDGE|GO:0048266|GO:0007610|is_a
+SYNS:behaviour
+DEFXREFS:WB:ems|ISBN:0395448956
+EDGE|GO:0007635|GO:0007610|is_a
+EDGE|GO:0042630|GO:0007610|is_a
+EDGE|GO:0001662|GO:0007610|is_a
+EDGE|GO:0048266|GO:0007610|is_a
+EDGE|GO:0030534|GO:0007610|is_a
+EDGE|GO:0007631|GO:0007610|is_a
EDGE|GO:0007610|GO:0008150|is_a
-EDGE|GO:0008150|root|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0007636|GO:0007635|is_a
-EDGE|GO:0007636|GO:0007630|is_a
SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase
XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN
COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology.
DEFXREFS:MetaCyc:1.1.1.249-RXN
EDGE|GO:0050983|GO:0046203|is_a
+DEFXREFS:GO:jic|ISBN:0198606907
+EDGE|GO:0007629|GO:0008344|is_a
SYNS:pumping behavior
DEFXREFS:PMID:2181052|WB:cab
EDGE|GO:0043051|GO:0043050|part_of
EDGE|GO:0043050|GO:0042755|is_a
+DEFXREFS:GO:curators
+EDGE|GO:0007610|GO:0008150|is_a
+EDGE|GO:0008150|root|is_a
+SYNS:class I PI3K|FAKE:0001|fake synonym
+EXACT SYNS:fake synonym
+COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'.
+DEFXREFS:GO:curators|EC:2.7.1.68
DEFXREFS:GO:jic
-EDGE|GO:0042048|GO:0007635|is_a
-DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007629|GO:0008344|is_a
+EDGE|GO:0048150|GO:0045472|is_a
+EDGE|GO:0048150|GO:0030534|is_a
SYNS:behavioral response to drought|behavioral response to thirst
DEFXREFS:GO:jl
EDGE|GO:0042630|GO:0009414|is_a
EDGE|GO:0042630|GO:0007610|is_a
+SYNS:drinking|eating
+DEFXREFS:GO:mah
+EDGE|GO:0042595|GO:0007631|is_a
+EDGE|GO:0042755|GO:0007631|is_a
+EDGE|GO:0008343|GO:0007631|is_a
+EDGE|GO:0042756|GO:0007631|is_a
+EDGE|GO:0007631|GO:0007610|is_a
+DEFXREFS:ISBN:01928006X|GO:jl
+EDGE|GO:0043050|GO:0042755|is_a
+EDGE|GO:0042755|GO:0007631|is_a
+DEFXREFS:ISBN:0198506732|FB:bf
+EDGE|GO:0035095|GO:0035094|is_a
+EDGE|GO:0035095|GO:0030534|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0042048|GO:0007635|is_a
EDGE|GO:0008150|root|is_a
-SYNS:behaviour
-DEFXREFS:WB:ems|ISBN:0395448956
-EDGE|GO:0048266|GO:0007610|is_a
-EDGE|GO:0030534|GO:0007610|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0007636|GO:0007635|is_a
+EDGE|GO:0007636|GO:0007630|is_a
+DEFXREFS:GO:curators
+EDGE|GO:0042595|GO:0007631|is_a
+EDGE|GO:0042595|GO:0042594|is_a
+DEFXREFS:GO:curators
+EDGE|GO:0007636|GO:0007635|is_a
+EDGE|GO:0042048|GO:0007635|is_a
+EDGE|GO:0007637|GO:0007635|is_a
EDGE|GO:0007635|GO:0007610|is_a
-EDGE|GO:0001662|GO:0007610|is_a
-EDGE|GO:0007631|GO:0007610|is_a
-EDGE|GO:0042630|GO:0007610|is_a
-EDGE|GO:0007610|GO:0008150|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0048148|GO:0042220|is_a
+EDGE|GO:0048148|GO:0030534|is_a
DEFXREFS:GO:jic|ISBN:0198606907
EDGE|GO:0007636|GO:0007630|is_a
EDGE|GO:0007630|GO:0008344|is_a
-DEFXREFS:GO:curators
-EDGE|GO:0042595|GO:0042594|is_a
-EDGE|GO:0042595|GO:0007631|is_a
-DEFXREFS:WB:cab|PMID:2181052
-EDGE|GO:0043051|GO:0043050|part_of
-DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk
-EDGE|GO:0048266|GO:0007610|is_a
-EDGE|GO:0048266|GO:0048265|is_a
-DEFXREFS:ISBN:0198506732|FB:bf
-EDGE|GO:0035095|GO:0035094|is_a
-EDGE|GO:0035095|GO:0030534|is_a
DEFXREFS:GO:mah|ISBN:0877797099
-EDGE|GO:0008344|GO:0030534|is_a
-EDGE|GO:0035095|GO:0030534|is_a
-EDGE|GO:0048150|GO:0030534|is_a
EDGE|GO:0008343|GO:0030534|is_a
+EDGE|GO:0035095|GO:0030534|is_a
EDGE|GO:0048149|GO:0030534|is_a
+EDGE|GO:0048150|GO:0030534|is_a
EDGE|GO:0048148|GO:0030534|is_a
+EDGE|GO:0008344|GO:0030534|is_a
EDGE|GO:0030534|GO:0007610|is_a
+DEFXREFS:GO:jic|ISBN:0198606907
+EDGE|GO:0007628|GO:0008344|is_a
+DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl
+EDGE|GO:0042756|GO:0007631|is_a
+DEFXREFS:GO:mah
+EDGE|GO:0008343|GO:0030534|is_a
+EDGE|GO:0008343|GO:0007631|is_a
+DEFXREFS:WB:cab|PMID:2181052
+EDGE|GO:0043051|GO:0043050|part_of
+DEFXREFS:GO:ai
+EDGE|GO:0007628|GO:0008344|is_a
+EDGE|GO:0007630|GO:0008344|is_a
+EDGE|GO:0007629|GO:0008344|is_a
+EDGE|GO:0008344|GO:0030534|is_a
+EDGE|GO:0008344|GO:0007626|is_a
total defs:27
total def xrefs:42
total xrefs:2
@@ -1251,111 +1321,111 @@
Parsing: ./t/data/go-truncated.obo.obo_xml
ok 14
ROOT: root
-ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase
ROOT: Part of
+ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase
ROOT: 1-phosphatidylinositol-4-phosphate kinase
TERMS: 29
+DEFXREFS:GO:curators
+EDGE|GO:0042595|GO:0007631|is_a
+EDGE|GO:0042595|GO:0042594|is_a
+DEFXREFS:GO:curators
+EDGE|GO:0042048|GO:0007635|is_a
+EDGE|GO:0007636|GO:0007635|is_a
+EDGE|GO:0007637|GO:0007635|is_a
+EDGE|GO:0007635|GO:0007610|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0048148|GO:0042220|is_a
+EDGE|GO:0048148|GO:0030534|is_a
DEFXREFS:GO:mah|ISBN:0877797099
+EDGE|GO:0048148|GO:0030534|is_a
EDGE|GO:0008344|GO:0030534|is_a
-EDGE|GO:0035095|GO:0030534|is_a
EDGE|GO:0008343|GO:0030534|is_a
-EDGE|GO:0048150|GO:0030534|is_a
+EDGE|GO:0035095|GO:0030534|is_a
EDGE|GO:0048149|GO:0030534|is_a
-EDGE|GO:0048148|GO:0030534|is_a
+EDGE|GO:0048150|GO:0030534|is_a
EDGE|GO:0030534|GO:0007610|is_a
-DEFXREFS:ISBN:0198506732|FB:bf
-EDGE|GO:0035095|GO:0035094|is_a
-EDGE|GO:0035095|GO:0030534|is_a
-DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk
-EDGE|GO:0048266|GO:0048265|is_a
-EDGE|GO:0048266|GO:0007610|is_a
-DEFXREFS:WB:cab|PMID:2181052
-EDGE|GO:0043051|GO:0043050|part_of
-DEFXREFS:GO:curators
-EDGE|GO:0042595|GO:0007631|is_a
-EDGE|GO:0042595|GO:0042594|is_a
DEFXREFS:GO:jic|ISBN:0198606907
EDGE|GO:0007636|GO:0007630|is_a
EDGE|GO:0007630|GO:0008344|is_a
-EDGE|GO:0008150|root|is_a
-SYNS:behaviour
-DEFXREFS:WB:ems|ISBN:0395448956
-EDGE|GO:0007635|GO:0007610|is_a
-EDGE|GO:0030534|GO:0007610|is_a
-EDGE|GO:0048266|GO:0007610|is_a
-EDGE|GO:0042630|GO:0007610|is_a
-EDGE|GO:0007631|GO:0007610|is_a
-EDGE|GO:0001662|GO:0007610|is_a
-EDGE|GO:0007610|GO:0008150|is_a
-SYNS:behavioral response to drought|behavioral response to thirst
-DEFXREFS:GO:jl
-EDGE|GO:0042630|GO:0007610|is_a
-EDGE|GO:0042630|GO:0009414|is_a
DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007629|GO:0008344|is_a
+EDGE|GO:0007628|GO:0008344|is_a
+DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl
+EDGE|GO:0042756|GO:0007631|is_a
+DEFXREFS:ISBN:01928006X|GO:jl
+EDGE|GO:0043050|GO:0042755|is_a
+EDGE|GO:0042755|GO:0007631|is_a
+DEFXREFS:ISBN:0198506732|FB:bf
+EDGE|GO:0035095|GO:0030534|is_a
+EDGE|GO:0035095|GO:0035094|is_a
DEFXREFS:GO:jic
EDGE|GO:0042048|GO:0007635|is_a
+EDGE|GO:0008150|root|is_a
DEFXREFS:GO:jic
EDGE|GO:0007636|GO:0007635|is_a
EDGE|GO:0007636|GO:0007630|is_a
+DEFXREFS:WB:cab|PMID:2181052
+EDGE|GO:0043051|GO:0043050|part_of
+DEFXREFS:GO:ai
+EDGE|GO:0007630|GO:0008344|is_a
+EDGE|GO:0007628|GO:0008344|is_a
+EDGE|GO:0007629|GO:0008344|is_a
+EDGE|GO:0008344|GO:0007626|is_a
+EDGE|GO:0008344|GO:0030534|is_a
+DEFXREFS:GO:mah
+EDGE|GO:0008343|GO:0030534|is_a
+EDGE|GO:0008343|GO:0007631|is_a
SYNS:pumping behavior
DEFXREFS:PMID:2181052|WB:cab
EDGE|GO:0043051|GO:0043050|part_of
EDGE|GO:0043050|GO:0042755|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0048149|GO:0030534|is_a
+EDGE|GO:0048149|GO:0045471|is_a
+DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk
+EDGE|GO:0007637|GO:0007635|is_a
+DEFXREFS:MGI:dph|MEDLINE:99119440
+EDGE|GO:0001662|GO:0042596|is_a
+EDGE|GO:0001662|GO:0007610|is_a
+DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk
+EDGE|GO:0048266|GO:0007610|is_a
+EDGE|GO:0048266|GO:0048265|is_a
+SYNS:behaviour
+DEFXREFS:WB:ems|ISBN:0395448956
+EDGE|GO:0030534|GO:0007610|is_a
+EDGE|GO:0048266|GO:0007610|is_a
+EDGE|GO:0007631|GO:0007610|is_a
+EDGE|GO:0007635|GO:0007610|is_a
+EDGE|GO:0042630|GO:0007610|is_a
+EDGE|GO:0001662|GO:0007610|is_a
+EDGE|GO:0007610|GO:0008150|is_a
SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase
XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN
COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology.
DEFXREFS:MetaCyc:1.1.1.249-RXN
EDGE|GO:0050983|GO:0046203|is_a
+DEFXREFS:GO:jic|ISBN:0198606907
+EDGE|GO:0007629|GO:0008344|is_a
+SYNS:drinking|eating
+DEFXREFS:GO:mah
+EDGE|GO:0042755|GO:0007631|is_a
+EDGE|GO:0042595|GO:0007631|is_a
+EDGE|GO:0008343|GO:0007631|is_a
+EDGE|GO:0042756|GO:0007631|is_a
+EDGE|GO:0007631|GO:0007610|is_a
DEFXREFS:GO:curators
EDGE|GO:0007610|GO:0008150|is_a
EDGE|GO:0008150|root|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0048149|GO:0030534|is_a
-EDGE|GO:0048149|GO:0045471|is_a
-DEFXREFS:ISBN:01928006X|GO:jl
-EDGE|GO:0043050|GO:0042755|is_a
-EDGE|GO:0042755|GO:0007631|is_a
-DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk
-EDGE|GO:0007637|GO:0007635|is_a
SYNS:class I PI3K|FAKE:0001|fake synonym
EXACT SYNS:fake synonym
COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'.
DEFXREFS:GO:curators|EC:2.7.1.68
-DEFXREFS:GO:ai
-EDGE|GO:0007630|GO:0008344|is_a
-EDGE|GO:0007628|GO:0008344|is_a
-EDGE|GO:0007629|GO:0008344|is_a
-EDGE|GO:0008344|GO:0030534|is_a
-EDGE|GO:0008344|GO:0007626|is_a
-DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007628|GO:0008344|is_a
-DEFXREFS:GO:curators
-EDGE|GO:0007636|GO:0007635|is_a
-EDGE|GO:0007637|GO:0007635|is_a
-EDGE|GO:0042048|GO:0007635|is_a
-EDGE|GO:0007635|GO:0007610|is_a
DEFXREFS:GO:jic
EDGE|GO:0048150|GO:0030534|is_a
EDGE|GO:0048150|GO:0045472|is_a
-DEFXREFS:GO:mah
-EDGE|GO:0008343|GO:0007631|is_a
-EDGE|GO:0008343|GO:0030534|is_a
-DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl
-EDGE|GO:0042756|GO:0007631|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0048148|GO:0042220|is_a
-EDGE|GO:0048148|GO:0030534|is_a
-DEFXREFS:MGI:dph|MEDLINE:99119440
-EDGE|GO:0001662|GO:0007610|is_a
-EDGE|GO:0001662|GO:0042596|is_a
-SYNS:drinking|eating
-DEFXREFS:GO:mah
-EDGE|GO:0042756|GO:0007631|is_a
-EDGE|GO:0042595|GO:0007631|is_a
-EDGE|GO:0042755|GO:0007631|is_a
-EDGE|GO:0008343|GO:0007631|is_a
-EDGE|GO:0007631|GO:0007610|is_a
+SYNS:behavioral response to drought|behavioral response to thirst
+DEFXREFS:GO:jl
+EDGE|GO:0042630|GO:0007610|is_a
+EDGE|GO:0042630|GO:0009414|is_a
total defs:27
total def xrefs:42
total xrefs:2
@@ -1380,111 +1450,111 @@
Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text
ok 26
ROOT: 1-phosphatidylinositol-4-phosphate kinase
-ROOT: Part of
ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase
+ROOT: Part of
ROOT: root
TERMS: 29
+SYNS:class I PI3K|FAKE:0001|fake synonym
+EXACT SYNS:fake synonym
+COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'.
+DEFXREFS:GO:curators|EC:2.7.1.68
+SYNS:behavioral response to drought|behavioral response to thirst
+DEFXREFS:GO:jl
+EDGE|GO:0042630|GO:0009414|is_a
+EDGE|GO:0042630|GO:0007610|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0048150|GO:0045472|is_a
+EDGE|GO:0048150|GO:0030534|is_a
+DEFXREFS:GO:curators
+EDGE|GO:0007610|GO:0008150|is_a
+EDGE|GO:0008150|root|is_a
SYNS:drinking|eating
DEFXREFS:GO:mah
EDGE|GO:0042755|GO:0007631|is_a
-EDGE|GO:0008343|GO:0007631|is_a
EDGE|GO:0042595|GO:0007631|is_a
EDGE|GO:0042756|GO:0007631|is_a
+EDGE|GO:0008343|GO:0007631|is_a
EDGE|GO:0007631|GO:0007610|is_a
-DEFXREFS:MGI:dph|MEDLINE:99119440
+DEFXREFS:GO:jic|ISBN:0198606907
+EDGE|GO:0007629|GO:0008344|is_a
+SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase
+XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN
+COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology.
+DEFXREFS:MetaCyc:1.1.1.249-RXN
+EDGE|GO:0050983|GO:0046203|is_a
+DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk
+EDGE|GO:0048266|GO:0048265|is_a
+EDGE|GO:0048266|GO:0007610|is_a
+SYNS:behaviour
+DEFXREFS:WB:ems|ISBN:0395448956
+EDGE|GO:0007631|GO:0007610|is_a
+EDGE|GO:0048266|GO:0007610|is_a
+EDGE|GO:0030534|GO:0007610|is_a
EDGE|GO:0001662|GO:0007610|is_a
+EDGE|GO:0007635|GO:0007610|is_a
+EDGE|GO:0042630|GO:0007610|is_a
+EDGE|GO:0007610|GO:0008150|is_a
+DEFXREFS:MGI:dph|MEDLINE:99119440
EDGE|GO:0001662|GO:0042596|is_a
+EDGE|GO:0001662|GO:0007610|is_a
+DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk
+EDGE|GO:0007637|GO:0007635|is_a
DEFXREFS:GO:jic
-EDGE|GO:0048148|GO:0042220|is_a
-EDGE|GO:0048148|GO:0030534|is_a
-DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl
-EDGE|GO:0042756|GO:0007631|is_a
+EDGE|GO:0048149|GO:0045471|is_a
+EDGE|GO:0048149|GO:0030534|is_a
+SYNS:pumping behavior
+DEFXREFS:PMID:2181052|WB:cab
+EDGE|GO:0043051|GO:0043050|part_of
+EDGE|GO:0043050|GO:0042755|is_a
DEFXREFS:GO:mah
-EDGE|GO:0008343|GO:0007631|is_a
EDGE|GO:0008343|GO:0030534|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0048150|GO:0030534|is_a
-EDGE|GO:0048150|GO:0045472|is_a
+EDGE|GO:0008343|GO:0007631|is_a
DEFXREFS:GO:ai
EDGE|GO:0007629|GO:0008344|is_a
EDGE|GO:0007628|GO:0008344|is_a
EDGE|GO:0007630|GO:0008344|is_a
-EDGE|GO:0008344|GO:0007626|is_a
EDGE|GO:0008344|GO:0030534|is_a
-SYNS:class I PI3K|fake synonym|FAKE:0001
-EXACT SYNS:fake synonym
-COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'.
-DEFXREFS:GO:curators|EC:2.7.1.68
-DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007628|GO:0008344|is_a
-DEFXREFS:GO:curators
-EDGE|GO:0042048|GO:0007635|is_a
+EDGE|GO:0008344|GO:0007626|is_a
+DEFXREFS:WB:cab|PMID:2181052
+EDGE|GO:0043051|GO:0043050|part_of
+DEFXREFS:GO:jic
+EDGE|GO:0007636|GO:0007630|is_a
EDGE|GO:0007636|GO:0007635|is_a
-EDGE|GO:0007637|GO:0007635|is_a
-EDGE|GO:0007635|GO:0007610|is_a
+EDGE|GO:0008150|root|is_a
+DEFXREFS:GO:jic
+EDGE|GO:0042048|GO:0007635|is_a
+DEFXREFS:ISBN:0198506732|FB:bf
+EDGE|GO:0035095|GO:0035094|is_a
+EDGE|GO:0035095|GO:0030534|is_a
DEFXREFS:ISBN:01928006X|GO:jl
EDGE|GO:0043050|GO:0042755|is_a
EDGE|GO:0042755|GO:0007631|is_a
-DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk
-EDGE|GO:0007637|GO:0007635|is_a
-DEFXREFS:GO:curators
-EDGE|GO:0007610|GO:0008150|is_a
-EDGE|GO:0008150|root|is_a
-DEFXREFS:GO:jic
+DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl
+EDGE|GO:0042756|GO:0007631|is_a
+DEFXREFS:GO:mah|ISBN:0877797099
+EDGE|GO:0048150|GO:0030534|is_a
EDGE|GO:0048149|GO:0030534|is_a
-EDGE|GO:0048149|GO:0045471|is_a
-DEFXREFS:GO:jic
-EDGE|GO:0007636|GO:0007635|is_a
+EDGE|GO:0035095|GO:0030534|is_a
+EDGE|GO:0008343|GO:0030534|is_a
+EDGE|GO:0008344|GO:0030534|is_a
+EDGE|GO:0048148|GO:0030534|is_a
+EDGE|GO:0030534|GO:0007610|is_a
+DEFXREFS:GO:jic|ISBN:0198606907
EDGE|GO:0007636|GO:0007630|is_a
-SYNS:pumping behavior
-DEFXREFS:PMID:2181052|WB:cab
-EDGE|GO:0043051|GO:0043050|part_of
-EDGE|GO:0043050|GO:0042755|is_a
-SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase
-XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN
-COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology.
-DEFXREFS:MetaCyc:1.1.1.249-RXN
-EDGE|GO:0050983|GO:0046203|is_a
+EDGE|GO:0007630|GO:0008344|is_a
DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007629|GO:0008344|is_a
+EDGE|GO:0007628|GO:0008344|is_a
DEFXREFS:GO:jic
+EDGE|GO:0048148|GO:0030534|is_a
+EDGE|GO:0048148|GO:0042220|is_a
+DEFXREFS:GO:curators
+EDGE|GO:0007637|GO:0007635|is_a
EDGE|GO:0042048|GO:0007635|is_a
-SYNS:behaviour
-DEFXREFS:WB:ems|ISBN:0395448956
-EDGE|GO:0048266|GO:0007610|is_a
-EDGE|GO:0030534|GO:0007610|is_a
+EDGE|GO:0007636|GO:0007635|is_a
EDGE|GO:0007635|GO:0007610|is_a
-EDGE|GO:0007631|GO:0007610|is_a
-EDGE|GO:0001662|GO:0007610|is_a
-EDGE|GO:0042630|GO:0007610|is_a
-EDGE|GO:0007610|GO:0008150|is_a
-EDGE|GO:0008150|root|is_a
-SYNS:behavioral response to drought|behavioral response to thirst
-DEFXREFS:GO:jl
-EDGE|GO:0042630|GO:0009414|is_a
-EDGE|GO:0042630|GO:0007610|is_a
-DEFXREFS:GO:jic|ISBN:0198606907
-EDGE|GO:0007636|GO:0007630|is_a
-EDGE|GO:0007630|GO:0008344|is_a
DEFXREFS:GO:curators
-EDGE|GO:0042595|GO:0042594|is_a
EDGE|GO:0042595|GO:0007631|is_a
-DEFXREFS:WB:cab|PMID:2181052
-EDGE|GO:0043051|GO:0043050|part_of
-DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk
-EDGE|GO:0048266|GO:0048265|is_a
-EDGE|GO:0048266|GO:0007610|is_a
-DEFXREFS:GO:mah|ISBN:0877797099
-EDGE|GO:0048148|GO:0030534|is_a
-EDGE|GO:0048149|GO:0030534|is_a
-EDGE|GO:0048150|GO:0030534|is_a
-EDGE|GO:0008343|GO:0030534|is_a
-EDGE|GO:0008344|GO:0030534|is_a
-EDGE|GO:0035095|GO:0030534|is_a
-EDGE|GO:0030534|GO:0007610|is_a
-DEFXREFS:ISBN:0198506732|FB:bf
-EDGE|GO:0035095|GO:0035094|is_a
-EDGE|GO:0035095|GO:0030534|is_a
+EDGE|GO:0042595|GO:0042594|is_a
total defs:27
total def xrefs:42
total xrefs:2
@@ -1508,8 +1578,8 @@
t/t070parseannot2obj.t ...
1..5
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:01 2021
-# Current time GMT: Mon Jul 19 14:10:01 2021
+# Current time local: Mon Aug 22 10:33:46 2022
+# Current time GMT: Sun Aug 21 20:33:46 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -1901,8 +1971,8 @@
t/t080gofmt2.t ...........
1..3
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:02 2021
-# Current time GMT: Mon Jul 19 14:10:02 2021
+# Current time local: Mon Aug 22 10:33:46 2022
+# Current time GMT: Sun Aug 21 20:33:46 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -1956,8 +2026,8 @@
t/t100roundtrip.t ........
1..2
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:02 2021
-# Current time GMT: Mon Jul 19 14:10:02 2021
+# Current time local: Mon Aug 22 10:33:46 2022
+# Current time GMT: Sun Aug 21 20:33:46 2022
# Using Test.pm version 1.31
./t/data/test-function.dat from:go_ont to:prolog
./t/data/test-function.dat from:go_ont to:obo_xml
@@ -1985,8 +2055,8 @@
t/t110basic.t ............
1..4
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:03 2021
-# Current time GMT: Mon Jul 19 14:10:03 2021
+# Current time local: Mon Aug 22 10:33:46 2022
+# Current time GMT: Sun Aug 21 20:33:46 2022
# Using Test.pm version 1.31
GO:0016604
GO:0016604
@@ -2004,8 +2074,8 @@
t/t130relations.t ........
1..7
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:04 2021
-# Current time GMT: Mon Jul 19 14:10:04 2021
+# Current time local: Mon Aug 22 10:33:46 2022
+# Current time GMT: Sun Aug 21 20:33:46 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2019,8 +2089,8 @@
t/t140subgraph.t .........
1..1
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:04 2021
-# Current time GMT: Mon Jul 19 14:10:04 2021
+# Current time local: Mon Aug 22 10:33:46 2022
+# Current time GMT: Sun Aug 21 20:33:46 2022
# Using Test.pm version 1.31
$Gene_Ontology ; GO:0003673
%molecular_function ; GO:0003674
@@ -2032,8 +2102,8 @@
t/t150xref.t .............
1..2
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:04 2021
-# Current time GMT: Mon Jul 19 14:10:04 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2041,8 +2111,8 @@
t/t160logicaldef.t .......
1..5
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:04 2021
-# Current time GMT: Mon Jul 19 14:10:04 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ns: biological_process
@@ -2058,8 +2128,8 @@
t/t170chadoxml.t .........
1..9
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:04 2021
-# Current time GMT: Mon Jul 19 14:10:04 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2074,8 +2144,8 @@
t/t175chadoxml_oborel.t ..
1..9
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:05 2021
-# Current time GMT: Mon Jul 19 14:10:05 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2090,8 +2160,8 @@
t/t180ncbi_taxonomy.t ....
1..4
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:05 2021
-# Current time GMT: Mon Jul 19 14:10:05 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo
ok 1
@@ -2103,8 +2173,8 @@
t/t200impliedlinks.t .....
1..2
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:05 2021
-# Current time GMT: Mon Jul 19 14:10:05 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2112,8 +2182,8 @@
t/t210cache.t ............
1..6
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:06 2021
-# Current time GMT: Mon Jul 19 14:10:06 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2125,8 +2195,8 @@
t/t220xref_esc.t .........
1..6
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:06 2021
-# Current time GMT: Mon Jul 19 14:10:06 2021
+# Current time local: Mon Aug 22 10:33:47 2022
+# Current time GMT: Sun Aug 21 20:33:47 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2140,8 +2210,8 @@
t/t230term_expression.t ..
1..1
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:06 2021
-# Current time GMT: Mon Jul 19 14:10:06 2021
+# Current time local: Mon Aug 22 10:33:48 2022
+# Current time GMT: Sun Aug 21 20:33:48 2022
# Using Test.pm version 1.31
<?xml version="1.0" encoding="UTF-8"?>
<intersection>
@@ -2236,8 +2306,8 @@
t/t240ga2obj.t ...........
1..3
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:06 2021
-# Current time GMT: Mon Jul 19 14:10:06 2021
+# Current time local: Mon Aug 22 10:33:48 2022
+# Current time GMT: Sun Aug 21 20:33:48 2022
# Using Test.pm version 1.31
ok 1
ok 2
@@ -2246,8 +2316,8 @@
t/t260oborel_in_chado.t ..
1..6
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:06 2021
-# Current time GMT: Mon Jul 19 14:10:06 2021
+# Current time local: Mon Aug 22 10:33:48 2022
+# Current time GMT: Sun Aug 21 20:33:48 2022
# Using Test.pm version 1.31
<?xml version="1.0" encoding="UTF-8"?>
<cvterm op="force" id="part_of">
@@ -2299,8 +2369,8 @@
t/t270oborel_in_owl.t ....
1..4
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:07 2021
-# Current time GMT: Mon Jul 19 14:10:07 2021
+# Current time local: Mon Aug 22 10:33:48 2022
+# Current time GMT: Sun Aug 21 20:33:48 2022
# Using Test.pm version 1.31
'(owl:TransitiveProperty
(@
@@ -2348,8 +2418,8 @@
t/t290disjoint.t .........
1..2
# Running under perl version 5.032001 for linux
-# Current time local: Mon Jul 19 02:10:07 2021
-# Current time GMT: Mon Jul 19 14:10:07 2021
+# Current time local: Mon Aug 22 10:33:48 2022
+# Current time GMT: Sun Aug 21 20:33:48 2022
# Using Test.pm version 1.31
ok 1
GO:0009987
@@ -2357,227 +2427,227 @@
ok 2
ok
All tests successful.
-Files=24, Tests=140, 8 wallclock secs ( 0.19 usr 0.49 sys + 5.63 cusr 0.68 csys = 6.99 CPU)
+Files=24, Tests=140, 3 wallclock secs ( 0.12 usr 0.02 sys + 2.92 cusr 0.20 csys = 3.26 CPU)
Result: PASS
make[1]: Leaving directory '/build/libgo-perl-0.15'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
- make -j10 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
+ make -j18 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libgo-perl-0.15'
Manifying 10 pod documents
Manifying 38 pod documents
Manifying 33 pod documents
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl
-Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist
Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl
+Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl
make[1]: Leaving directory '/build/libgo-perl-0.15'
debian/rules override_dh_install
make[1]: Entering directory '/build/libgo-perl-0.15'
@@ -2605,12 +2675,14 @@
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/42342/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/42342/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/14639 and its subdirectories
-I: Current time: Mon Jul 19 02:10:19 -12 2021
-I: pbuilder-time-stamp: 1626703819
+I: removing directory /srv/workspace/pbuilder/42342 and its subdirectories
+I: Current time: Mon Aug 22 10:33:51 +14 2022
+I: pbuilder-time-stamp: 1661114031