Diff of the two buildlogs: -- --- b1/build.log 2021-06-04 02:09:22.284617850 +0000 +++ b2/build.log 2021-06-04 02:24:37.832973571 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 6 20:30:51 -12 2022 -I: pbuilder-time-stamp: 1657182651 +I: Current time: Fri Jun 4 16:09:25 +14 2021 +I: pbuilder-time-stamp: 1622772565 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./libpwizlite_3.0.3-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.iqQarR1O/trustedkeys.kbx': General error -gpgv: Signature made Tue Oct 20 21:21:24 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.LK9qC3zE/trustedkeys.kbx': General error +gpgv: Signature made Wed Oct 21 23:21:24 2020 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwizlite_3.0.3-1.dsc @@ -27,137 +27,171 @@ dpkg-source: info: unpacking libpwizlite_3.0.3-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/33402/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12886/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12886/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12886/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='3ee50a3751ea4d6080f58fb98c9dce4b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='33402' - PS1='# ' - PS2='> ' + INVOCATION_ID=acdc623143ad44afb53440cc3fa39a01 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12886 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ayDuLQJxmb/pbuilderrc_0Kl3 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ayDuLQJxmb/b1 --logfile b1/build.log libpwizlite_3.0.3-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ayDuLQJxmb/pbuilderrc_YXcB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ayDuLQJxmb/b2 --logfile b2/build.log --extrapackages usrmerge libpwizlite_3.0.3-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin - total 5776 - -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 2021 more - -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount - -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 03:47 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/33402/tmp/hooks/D02_print_environment finished + total 5792 + -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 03:23 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more + -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 4 16:14 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 2 23:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/12886/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -304,7 +338,7 @@ Get: 91 http://deb.debian.org/debian bullseye/main i386 python3-roman all 2.0.0-5 [9064 B] Get: 92 http://deb.debian.org/debian bullseye/main i386 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] -Fetched 61.4 MB in 1s (83.1 MB/s) +Fetched 61.4 MB in 16s (3721 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) @@ -712,9 +746,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1532 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41745 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libpwizlite-3.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/libpwizlite-3.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.3-1 dpkg-buildpackage: info: source distribution unstable @@ -797,81 +863,81 @@ rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 debian/libpwizlite.3.rst:20: (WARNING/2) Inline emphasis start-string without end-string. sh debian/make-included-headers-hierarchy.sh -baseName: foreach_field.hpp +baseName: enum.hpp dirName: boost -'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/foreach_field.hpp' -baseName: base.hpp -dirName: boost/enum -'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/base.hpp' -baseName: iterator.hpp -dirName: boost/enum -'boost/enum/iterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/iterator.hpp' -baseName: macros.hpp -dirName: boost/enum -'boost/enum/macros.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/macros.hpp' -baseName: bitfield.hpp -dirName: boost/enum -'boost/enum/bitfield.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/bitfield.hpp' -baseName: cstdlib.hpp +'boost/enum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum.hpp' +baseName: windows.hpp dirName: boost/nowide -'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' -baseName: args.hpp +'boost/nowide/windows.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/windows.hpp' +baseName: fstream.hpp dirName: boost/nowide -'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/args.hpp' -baseName: config.hpp +'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/fstream.hpp' +baseName: iostream.hpp dirName: boost/nowide -'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/config.hpp' -baseName: filebuf.hpp +'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/iostream.hpp' +baseName: args.hpp dirName: boost/nowide -'boost/nowide/filebuf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/filebuf.hpp' +'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/stackstring.hpp' -baseName: system.hpp +baseName: convert.hpp dirName: boost/nowide -'boost/nowide/system.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/system.hpp' +'boost/nowide/convert.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cenv.hpp' -baseName: iostream.hpp +baseName: filebuf.hpp dirName: boost/nowide -'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/iostream.hpp' -baseName: fstream.hpp +'boost/nowide/filebuf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/filebuf.hpp' +baseName: config.hpp dirName: boost/nowide -'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/fstream.hpp' -baseName: windows.hpp +'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/config.hpp' +baseName: system.hpp dirName: boost/nowide -'boost/nowide/windows.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/windows.hpp' -baseName: convert.hpp +'boost/nowide/system.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/system.hpp' +baseName: cstdlib.hpp dirName: boost/nowide -'boost/nowide/convert.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/convert.hpp' -baseName: enum.hpp +'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' +baseName: base.hpp +dirName: boost/enum +'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/base.hpp' +baseName: bitfield.hpp +dirName: boost/enum +'boost/enum/bitfield.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/bitfield.hpp' +baseName: macros.hpp +dirName: boost/enum +'boost/enum/macros.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/macros.hpp' +baseName: iterator.hpp +dirName: boost/enum +'boost/enum/iterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/iterator.hpp' +baseName: foreach_field.hpp dirName: boost -'boost/enum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum.hpp' +'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' -baseName: restricted.hpp -dirName: boost/utility/detail -'boost/utility/detail/restricted.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' +baseName: singleton.hpp +dirName: boost/utility +'boost/utility/singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/singleton.hpp' +baseName: mutexed_singleton.hpp +dirName: boost/utility +'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' +baseName: restricted.hpp +dirName: boost/utility/detail +'boost/utility/detail/restricted.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' -baseName: mutexed_singleton.hpp -dirName: boost/utility -'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' -baseName: singleton.hpp -dirName: boost/utility -'boost/utility/singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' @@ -887,390 +953,390 @@ baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' -baseName: FrequencyData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/FrequencyData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' -baseName: SampleDatum.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' -baseName: CVTranslator.hpp -dirName: pwiz/data/common -'pwiz/data/common/CVTranslator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' +baseName: SampleDatum.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' +baseName: FrequencyData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/FrequencyData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/Index.hpp' -baseName: ParamTypes.hpp +baseName: MemoryIndex.hpp dirName: pwiz/data/common -'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' -baseName: BinaryIndexStream.hpp +'pwiz/data/common/MemoryIndex.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' +baseName: diff_std.hpp dirName: pwiz/data/common -'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' -baseName: Unimod.hpp +'pwiz/data/common/diff_std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' +baseName: CVTranslator.hpp dirName: pwiz/data/common -'pwiz/data/common/Unimod.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' +'pwiz/data/common/CVTranslator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/obo.hpp' -baseName: diff_std.hpp +baseName: BinaryIndexStream.hpp dirName: pwiz/data/common -'pwiz/data/common/diff_std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' -baseName: MemoryIndex.hpp +'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' +baseName: ParamTypes.hpp dirName: pwiz/data/common -'pwiz/data/common/MemoryIndex.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' -baseName: IO.hpp +'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' +baseName: Unimod.hpp +dirName: pwiz/data/common +'pwiz/data/common/Unimod.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' +baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' +'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' +baseName: MemoryMRUCache.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' +baseName: RAMPAdapter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' +baseName: SpectrumList_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' +baseName: Serializer_mz5.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' +baseName: TextWriter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' -baseName: SpectrumList_mz5.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' -baseName: ChromatogramList_mz5.hpp +baseName: MSDataMerger.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' -baseName: SpectrumIterator.hpp +'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' +baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' -baseName: SpectrumList_mzML.hpp +'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' +baseName: References.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' -baseName: BinaryDataEncoder.hpp +'pwiz/data/msdata/References.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' +baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' -baseName: ChromatogramList_mzML.hpp +'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' +baseName: Index_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' -baseName: SpectrumWorkerThreads.hpp +'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' +'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' -baseName: SpectrumList_MGF.hpp +baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' +'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' +baseName: Serializer_MSn.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' -baseName: RAMPAdapter.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' -baseName: Serializer_mzXML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' -baseName: Reader.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Reader.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' -baseName: Index_mzML.hpp +baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' -baseName: SHA1OutputObserver.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' -baseName: SpectrumListBase.hpp +baseName: IO.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' -baseName: MSDataFile.hpp +'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' +baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' -baseName: ChromatogramListBase.hpp +'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' +baseName: Reader.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +'pwiz/data/msdata/Reader.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' +baseName: SpectrumIterator.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' -baseName: MSDataMerger.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' -baseName: SpectrumListWrapper.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' -baseName: References.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/References.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' -baseName: DefaultReaderList.hpp +baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' -baseName: TextWriter.hpp +'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' +baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' +'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' -baseName: MemoryMRUCache.hpp +baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' -baseName: Diff.hpp +'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' +baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' -baseName: SpectrumListCache.hpp +'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' +baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' +'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' -baseName: SpectrumInfo.hpp +baseName: Diff.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' -baseName: Serializer_MSn.hpp +'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' +baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' -baseName: SpectrumList_MSn.hpp +'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' +baseName: MSDataFile.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' -baseName: Serializer_mz5.hpp +'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' +baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' +'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +baseName: SpectrumListCache.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/Version.hpp' -baseName: Image.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' -baseName: Singleton.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' -baseName: SHA1Calculator.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' -baseName: String.hpp +baseName: Std.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' -baseName: Environment.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' -baseName: almost_equal.hpp +baseName: unit.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' -baseName: IterationListener.hpp +'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' +baseName: IntegerSet.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' +'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' -baseName: optimized_lexical_cast.hpp +baseName: BinaryData.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' -baseName: Filesystem.hpp +'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' +baseName: Once.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' +baseName: Base64.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' +baseName: COMInitializer.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/COMInitializer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' +baseName: almost_equal.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' +baseName: optimized_lexical_cast.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' -baseName: virtual_map.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' -baseName: Export.hpp +baseName: mru_list.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Export.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' -baseName: cpp_cli_utilities.hpp +'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' +baseName: MSIHandler.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' -baseName: Base64.hpp +'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' +baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' -baseName: automation_vector.h +'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' +baseName: IterationListener.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/automation_vector.h' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' -baseName: Timer.hpp +'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' +baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' -baseName: SHA1_ostream.hpp +'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' +baseName: Environment.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' -baseName: MSIHandler.hpp +'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' +baseName: Export.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' +'pwiz/utility/misc/Export.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' -baseName: BinaryData.hpp +baseName: endian.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' -baseName: random_access_compressed_ifstream.hpp +'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' +baseName: String.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' +'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +baseName: virtual_map.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' -baseName: COMInitializer.hpp +baseName: automation_vector.h dirName: pwiz/utility/misc -'pwiz/utility/misc/COMInitializer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' -baseName: unit.hpp +'pwiz/utility/misc/automation_vector.h' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' +baseName: Singleton.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' -baseName: IntegerSet.hpp +'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' +baseName: Timer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' -baseName: Std.hpp +'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' +baseName: Image.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' -baseName: ClickwrapPrompter.hpp +'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' +'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' -baseName: mru_list.hpp +baseName: Filesystem.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' -baseName: Once.hpp +'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' -baseName: endian.hpp +'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' +baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' -baseName: masscomparefunctors.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -baseName: breakspec.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -baseName: bin1d.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample/utilities -'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -baseName: constants.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' -baseName: diff.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' -baseName: base.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' -baseName: scale.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' -baseName: interpolate.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' -baseName: interpolation.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -baseName: base.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' -baseName: copyif.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' -baseName: filter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' -baseName: gauss.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -baseName: preparedata.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -baseName: gaussfilter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' +'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' +baseName: Parabola.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +baseName: Types.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' -baseName: MatchedFilter.hpp +baseName: round.hpp dirName: pwiz/utility/math -'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' -baseName: HouseholderQR.hpp +'pwiz/utility/math/round.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/round.hpp' +baseName: MatrixInverse.hpp dirName: pwiz/utility/math -'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' +'pwiz/utility/math/MatrixInverse.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' -baseName: erf.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' -baseName: Types.hpp +baseName: HouseholderQR.hpp dirName: pwiz/utility/math -'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' +'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' -baseName: Parabola.hpp +baseName: LinearSolver.hpp dirName: pwiz/utility/math -'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' -baseName: LinearSolver.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' -baseName: MatrixInverse.hpp +baseName: MatchedFilter.hpp dirName: pwiz/utility/math -'pwiz/utility/math/MatrixInverse.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' -baseName: round.hpp +'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' +baseName: erf.hpp dirName: pwiz/utility/math -'pwiz/utility/math/round.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/round.hpp' -baseName: SAXParser.hpp -dirName: pwiz/utility/minimxml -'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' +'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' +baseName: SAXParser.hpp +dirName: pwiz/utility/minimxml +'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' -baseName: IsotopeCalculator.hpp +baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' -baseName: MzMobilityWindow.hpp +'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +baseName: Chemistry.hpp dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' +'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' +baseName: IsotopeCalculator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' -baseName: IsotopeTable.hpp +baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' -baseName: Chemistry.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' +baseName: copyif.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' +baseName: base.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' +baseName: constants.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' +baseName: scale.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' +baseName: base.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' +baseName: interpolation.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' +baseName: diff.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' +baseName: interpolate.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' +baseName: breakspec.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' +baseName: bin1d.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample/utilities +'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' +baseName: masscomparefunctors.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' +baseName: filter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' +baseName: preparedata.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' +baseName: gauss.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' +baseName: gaussfilter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' make[1]: Leaving directory '/build/libpwizlite-3.0.3' dh_auto_build -O--build-system=cmake - cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libpwizlite-3.0.3 -B/build/libpwizlite-3.0.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libpwizlite-3.0.3/obj-i686-linux-gnu/CMakeFiles /build/libpwizlite-3.0.3/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -1279,63 +1345,76 @@ make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-i686-linux-gnu /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-i686-linux-gnu /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake --color= -Dependee "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/depend.internal". -Dependee "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/depend.internal". +make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-i686-linux-gnu /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= Dependee "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-static.dir/depend.internal". Dependee "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-static.dir/depend.internal". +Dependee "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/depend.internal". +Dependee "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/depend.internal". Scanning dependencies of target pwizlite-shared -Scanning dependencies of target pwizlite-static make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build +make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' +Scanning dependencies of target pwizlite-static make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build -make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' -make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -[ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp -[ 3%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -[ 5%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ 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/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp -[ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK 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-I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -[ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ +[ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o +make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp +[ 12%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = unsigned int]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here @@ -1347,11 +1426,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = double; pwiz::util::BinaryData::reference = double&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] @@ -1362,46 +1436,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] @@ -1437,26 +1471,11 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = float; pwiz::util::BinaryData::const_reference = const float&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = unsigned int]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] @@ -1467,16 +1486,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] @@ -1486,13 +1495,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1500,27 +1502,9 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} @@ -1537,16 +1521,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = long long int; pwiz::util::BinaryData::const_reference = const long long int&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long long int; pwiz::util::BinaryData::reference = long long int&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long long int; pwiz::util::BinaryData::reference = long long int&; pwiz::util::BinaryData::size_type = unsigned int]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] @@ -1562,46 +1536,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] @@ -1632,112 +1566,21 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -[ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp -[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp -[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp -[ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp -[ 30%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 32%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] - 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] - 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 14%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp +[ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp +[ 16%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { @@ -1746,41 +1589,15 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 17%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 33%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp -[ 35%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:28: +[ 19%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -1815,139 +1632,16 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 39%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 114 | } else if (init == mask) { - | ~~~~~^~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 524 | bool useWorkerThreads) const - | ~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] - 81 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] - 132 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] - 191 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] - 263 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 500 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] - 501 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 693 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] - 694 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] - 966 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] - 1079 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 1355 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] - 1356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 1660 | bool zlib = false; // Handle numpress+zlib - | ^~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2405:47: warning: unused parameter 'position' [-Wunused-parameter] - 2405 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2506:47: warning: unused parameter 'position' [-Wunused-parameter] - 2506 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2836:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] - 2754 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 41%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] - 261 | const std::string& filepath, - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] - 262 | bool closeMemoryMappedSections) noexcept(true) { - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] 261 | const std::string& filepath, @@ -1955,81 +1649,16 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 262 | bool closeMemoryMappedSections) noexcept(true) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 42%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 43%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp -[ 44%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp -[ 46%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp -[ 47%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 524 | bool useWorkerThreads) const | ~~~~~^~~~~~~~~~~~~~~~ -[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2071,12 +1700,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp -[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp -[ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] 81 | stream_offset position) @@ -2129,10 +1752,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1660 | bool zlib = false; // Handle numpress+zlib | ^~~~ -[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp -[ 55%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") @@ -2152,13 +1771,31 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] 2754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 23%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp +[ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp +[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp +[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ +[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp +[ 29%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp +[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2193,27 +1830,7 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.hpp:33, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: -/usr/include/boost/bind.hpp: At global scope: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2248,77 +1865,13 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +[ 32%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) @@ -2331,61 +1884,8 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 58%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] - 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const - | ~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1195:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1195 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2443,13 +1943,8 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here - 580 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ +[ 34%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: @@ -2457,8 +1952,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: @@ -2466,67 +1959,157 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] - 84 | } catch (index_not_found e){ - | ^ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] - 128 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:209:45: warning: unused parameter 'position' [-Wunused-parameter] - 209 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:236:47: warning: unused parameter 'position' [-Wunused-parameter] - 236 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:279:45: warning: unused parameter 'position' [-Wunused-parameter] - 279 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:299:70: warning: unused parameter 'position' [-Wunused-parameter] - 299 | virtual Status endElement(const std::string& name, stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:691:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 691 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:692:47: warning: unused parameter 'position' [-Wunused-parameter] - 692 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:700:45: warning: unused parameter 'position' [-Wunused-parameter] - 700 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:726:47: warning: unused parameter 'position' [-Wunused-parameter] - 726 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:744:45: warning: unused parameter 'position' [-Wunused-parameter] - 744 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:768:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 768 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:769:47: warning: unused parameter 'position' [-Wunused-parameter] - 769 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:786:59: warning: unused parameter 'text' [-Wunused-parameter] - 786 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:787:45: warning: unused parameter 'position' [-Wunused-parameter] - 787 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] - 875 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = double; pwiz::util::BinaryData::reference = double&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = float; pwiz::util::BinaryData::const_reference = const float&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = long long int; pwiz::util::BinaryData::const_reference = const long long int&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long long int; pwiz::util::BinaryData::reference = long long int&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -2535,35 +2118,10 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ -[ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp -[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp -[ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp -[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] - 302 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] -[ 66%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp -[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2605,12 +2163,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] - 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -[ 69%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -2672,6 +2224,68 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] 875 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 35%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp +[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] + 302 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] +[ 38%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] + 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const + | ~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1195:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1195 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +[ 39%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here + 580 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ +[ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp +[ 42%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] + 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] + 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] + 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2713,10 +2327,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp -[ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:201:51: warning: unused parameter 'attributes' [-Wunused-parameter] 201 | const Attributes& attributes, @@ -2724,8 +2334,12 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:202:47: warning: unused parameter 'position' [-Wunused-parameter] 202 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp +[ 44%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp +[ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp +[ 47%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2767,8 +2381,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter 'attributes' [-Wunused-parameter] 82 | const Attributes& attributes, @@ -2792,116 +2404,21 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp +[ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] - 302 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] - 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const - | ~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1195:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1195 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp -[ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o +[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here - 580 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ -[ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp -[ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] - 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -[ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp -[ 83%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp -[ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:32: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:201:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 201 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:202:47: warning: unused parameter 'position' [-Wunused-parameter] - 202 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ +[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] + 261 | const std::string& filepath, + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] + 262 | bool closeMemoryMappedSections) noexcept(true) { + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2951,12 +2468,12 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -2965,41 +2482,8 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ +[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter 'filename' [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const @@ -3091,8 +2575,53 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:480:51: warning: unused parameter 'config' [-Wunused-parameter] 480 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ -[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp +[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp +[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp +[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, @@ -3137,6 +2666,17 @@ /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:56: warning: unused parameter 'cvid' [-Wunused-parameter] 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ +[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp +[ 61%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp +[ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: +/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 102 | for (int o=0;o + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +[ 79%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 80%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] + 84 | } catch (index_not_found e){ + | ^ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] + 128 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:209:45: warning: unused parameter 'position' [-Wunused-parameter] + 209 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:236:47: warning: unused parameter 'position' [-Wunused-parameter] + 236 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:279:45: warning: unused parameter 'position' [-Wunused-parameter] + 279 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:299:70: warning: unused parameter 'position' [-Wunused-parameter] + 299 | virtual Status endElement(const std::string& name, stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:691:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 691 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:692:47: warning: unused parameter 'position' [-Wunused-parameter] + 692 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:700:45: warning: unused parameter 'position' [-Wunused-parameter] + 700 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:726:47: warning: unused parameter 'position' [-Wunused-parameter] + 726 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:744:45: warning: unused parameter 'position' [-Wunused-parameter] + 744 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:768:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 768 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:769:47: warning: unused parameter 'position' [-Wunused-parameter] + 769 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:786:59: warning: unused parameter 'text' [-Wunused-parameter] + 786 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:787:45: warning: unused parameter 'position' [-Wunused-parameter] + 787 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] + 875 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] + 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const + | ~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1195:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1195 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here + 580 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ +[ 82%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp +[ 83%] Linking CXX shared library libpwizlite.so +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.3 CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_atomic.so.1.74.0 -lpthread +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] + 302 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] + 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +[ 84%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp +[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp +[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:32: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3192,6 +3251,13 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:201:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 201 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:202:47: warning: unused parameter 'position' [-Wunused-parameter] + 202 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter 'attributes' [-Wunused-parameter] 82 | const Attributes& attributes, @@ -3215,21 +3281,16 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 102 | for (int o=0;o pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, @@ -3455,6 +3508,13 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1301:47: warning: unused parameter 'position' [-Wunused-parameter] 1301 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.3 libpwizlite.so.3 libpwizlite.so +make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-i686-linux-gnu' +[ 97%] Built target pwizlite-shared +[ 98%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.3/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:133:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 133 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || @@ -3480,12 +3540,18 @@ /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] 102 | for (int o=0;o