Diff of the two buildlogs: -- --- b1/build.log 2021-05-21 22:22:04.505656858 +0000 +++ b2/build.log 2021-05-21 23:05:42.127630876 +0000 @@ -1,6 +1,8 @@ -I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 23 16:35:09 -12 2022 -I: pbuilder-time-stamp: 1656045309 +unshare: unshare failed: Cannot allocate memory +W: pbuilder: unshare CLONE_NEWNET not available +I: pbuilder: network access is available during build! +I: Current time: Sat May 22 12:22:15 +14 2021 +I: pbuilder-time-stamp: 1621635735 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +19,8 @@ I: copying [./mmseqs2_12-113e3+ds-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.yviTjvp8/trustedkeys.kbx': General error -gpgv: Signature made Fri Feb 12 02:31:54 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.mGVkBXAt/trustedkeys.kbx': General error +gpgv: Signature made Sat Feb 13 04:31:54 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mmseqs2_12-113e3+ds-3.dsc @@ -34,137 +36,171 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/46861/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='ad38684b3536448cb4868417f6a116fc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='46861' - PS1='# ' - PS2='> ' + INVOCATION_ID=825f1eb6109c4cd4b208fd010d5389d6 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19453 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LjJw69OpOV/pbuilderrc_Uk0b --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LjJw69OpOV/b1 --logfile b1/build.log mmseqs2_12-113e3+ds-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LjJw69OpOV/pbuilderrc_LCTB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LjJw69OpOV/b2 --logfile b2/build.log --extrapackages usrmerge mmseqs2_12-113e3+ds-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin - total 5776 - -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 2021 more - -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount - -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 23 03:46 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/46861/tmp/hooks/D02_print_environment finished + total 5780 + -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 03:23 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more + -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 May 22 12:26 sh -> bash + lrwxrwxrwx 1 root root 4 May 22 04:22 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/19453/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -268,7 +304,7 @@ Get: 54 http://deb.debian.org/debian bullseye/main i386 libsimde-dev all 0.7.2-4 [259 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libzstd-dev i386 1.4.8+dfsg-2.1 [374 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] -Fetched 31.2 MB in 0s (88.9 MB/s) +Fetched 31.2 MB in 4s (8668 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) @@ -507,8 +543,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1789 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24995 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 12-113e3+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -518,17 +590,17 @@ debian/rules clean dh clean debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_auto_clean rm -Rf build-* -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2" && dh_auto_configure --builddirectory build_avx2 -- -DEXE_SUFFIX=-avx2 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx" && dh_auto_configure --builddirectory build_avx -- -DEXE_SUFFIX=-avx -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1" && dh_auto_configure --builddirectory build_sse4.1 -- -DEXE_SUFFIX=-sse4.1 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3" && dh_auto_configure --builddirectory build_ssse3 -- -DEXE_SUFFIX=-ssse3 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3" && dh_auto_configure --builddirectory build_sse3 -- -DEXE_SUFFIX=-sse3 -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 && true cd build_avx2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-avx2 -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 @@ -546,6 +618,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -595,6 +671,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -644,6 +724,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -693,6 +777,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -742,6 +830,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -793,6 +885,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -843,6 +939,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -892,6 +992,10 @@ -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU +CMake Warning at CMakeLists.txt:57 (message): + CPU without native SIMD instructions. Performance will be bad. + + -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE @@ -925,450 +1029,418 @@ -- Build files have been written to: /build/mmseqs2-12-113e3+ds/build_sse -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen debian/rules override_dh_auto_build-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten mkdir -p /build/mmseqs2-12-113e3+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true - cd build_avx2 && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' + cd build_avx2 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx2/CMakeFiles /build/mmseqs2-12-113e3+ds/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/data /build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/src/version /build/mmseqs2-12-113e3+ds/build_avx2/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/data /build/mmseqs2-12-113e3+ds/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_avx2 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[ 0%] Generating ../generated/VTML80.out.h -[ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -[ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -[ 3%] Generating ../generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -[ 3%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +Scanning dependencies of target ksw2 +[ 1%] Generating ../generated/blosum62.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +[ 2%] Generating ../generated/nucleotide.out.h +[ 2%] Generating ../generated/VTML40.out.h +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +Scanning dependencies of target tinyexpr cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 4%] Generating ../generated/nucleotide.out.h -[ 5%] Generating ../generated/blosum62.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 5%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -[ 5%] Generating ../generated/PAM30.out.h -Scanning dependencies of target alp -[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +Scanning dependencies of target version +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 7%] Generating ../generated/Library255_may17.lib.h +Scanning dependencies of target microtar cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp +[ 2%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +[ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +[ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +Scanning dependencies of target cacode +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +[ 4%] Generating ../generated/PAM30.out.h +[ 5%] Linking CXX static library libversion.a +[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +Scanning dependencies of target alp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +/usr/bin/ranlib libversion.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +[ 6%] Built target version +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 7%] Linking C static library libmicrotar.a +[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 8%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -[ 8%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -[ 9%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -[ 9%] Generating ../generated/krona_prelude.html.h -[ 10%] Generating ../generated/result_viz_prelude.html.zst.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +[ 9%] Built target microtar +[ 10%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp [ 10%] Generating ../generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp +[ 12%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 10%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h +[ 12%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h +[ 13%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h +[ 14%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +[ 14%] Built target tinyexpr +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp +[ 14%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -/usr/bin/ranlib libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -[ 10%] Generating ../generated/easycluster.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen +[ 14%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h -[ 11%] Generating ../generated/easytaxonomy.sh.h -[ 11%] Built target version -[ 11%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp +[ 14%] Built target cacode +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h +[ 15%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 13%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh +[ 15%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 16%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -[ 13%] Generating ../generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h +[ 16%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -[ 14%] Generating ../generated/map.sh.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h -[ 15%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +[ 18%] Generating ../generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +[ 18%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -[ 16%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h +[ 20%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 16%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp +[ 20%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h -[ 16%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h +[ 20%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp -[ 17%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 18%] Generating ../generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh +[ 20%] Built target ksw2 +[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h -[ 18%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh -[ 19%] Generating ../generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 22%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h -[ 19%] Generating ../generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h +[ 22%] Generating ../generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h +[ 23%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h +[ 23%] Generating ../generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h -[ 19%] Built target microtar -[ 20%] Generating ../generated/translated_search.sh.h -[ 20%] Generating ../generated/taxonomy.sh.h +[ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh -[ 21%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h +[ 24%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -[ 22%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h +[ 25%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp -[ 22%] Generating ../generated/multihitsearch.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -[ 23%] Generating ../generated/blastn.sh.h -[ 24%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h +[ 26%] Generating ../generated/enrich.sh.h +[ 26%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h -[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h -[ 25%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h +[ 26%] Generating ../generated/linsearch.sh.h +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 26%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +[ 28%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh -[ 26%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h -[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, - from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: @@ -1388,8 +1460,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, + from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: @@ -1409,6 +1487,32 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o @@ -1453,12 +1557,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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-I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -1597,24 +1695,18 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -1634,8 +1726,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -1655,20 +1751,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: @@ -1682,8 +1774,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: @@ -1703,8 +1793,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -1724,6 +1820,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: @@ -1731,6 +1829,7 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: @@ -1743,6 +1842,11 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o @@ -1757,22 +1861,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -1792,6 +1880,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: @@ -1811,18 +1903,39 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] + 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) + | ^ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ + 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) + | ^~ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ + 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); + | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -1831,6 +1944,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o @@ -1839,25 +1962,13 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] - 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) - | ^ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ - 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) - | ^~ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ - 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); - | ^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o @@ -1866,13 +1977,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o @@ -1883,12 +1987,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -1915,32 +2013,44 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: + from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o @@ -1951,12 +2061,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o @@ -1967,21 +2071,28 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: + from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o @@ -1992,17 +2103,17 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o @@ -2017,19 +2128,12 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o @@ -2057,20 +2161,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: @@ -2090,8 +2180,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated 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-I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -2100,6 +2198,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o @@ -2121,15 +2225,9 @@ [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o @@ -2137,6 +2235,12 @@ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ 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-I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-avx2.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs-avx2 cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs-avx2.dir/mmseqs.cpp.o -o mmseqs-avx2 libmmseqs-framework.a version/libversion.a /usr/lib/i386-linux-gnu/libatomic.so.1 ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen [100%] Built target mmseqs-avx2 -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx2/CMakeFiles 0 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' - cd build_avx && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen + cd build_avx && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx/CMakeFiles /build/mmseqs2-12-113e3+ds/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/lib/alp /build/mmseqs2-12-113e3+ds/build_avx/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' +make[4]: Verzeichnis 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cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/data /build/mmseqs2-12-113e3+ds/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version 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&& /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten Scanning dependencies of target tinyexpr -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Leaving directory 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+Scanning dependencies of target cacode +Scanning dependencies of target ksw2 +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +[ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c +[ 2%] Generating ../generated/VTML40.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -[ 3%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' +[ 2%] Generating ../generated/nucleotide.out.h +[ 2%] Generating ../generated/VTML80.out.h +[ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +[ 3%] Generating ../generated/blosum62.out.h +[ 3%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -[ 4%] Generating ../generated/blosum62.out.h -[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -[ 5%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -[ 5%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp -[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 7%] Generating ../generated/Library255_may17.lib.h +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +[ 5%] Generating ../generated/PAM30.out.h +[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +Scanning dependencies of target alp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +[ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +[ 7%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h +[ 7%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 8%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -[ 8%] Generating ../generated/libPolished_8.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -[ 10%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +[ 8%] Built target version +[ 9%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp [ 10%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h [ 11%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 11%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h -/usr/bin/ranlib libversion.a -[ 11%] Generating ../generated/easysearch.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' -[ 11%] Generating ../generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +[ 12%] Built target microtar +[ 12%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 12%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h +[ 12%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h +[ 13%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 12%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h -[ 12%] Built target version +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h +[ 13%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h [ 14%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp [ 14%] Generating ../generated/blastpgp.sh.h -[ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 16%] Generating ../generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h -[ 16%] Generating ../generated/rbh.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp +[ 16%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +[ 16%] Built target cacode +[ 16%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h +[ 17%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 16%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 18%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp -[ 16%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 17%] Generating ../generated/cascaded_clustering.sh.h -[ 18%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +/usr/bin/ranlib libtinyexpr.a +[ 18%] Generating ../generated/cascaded_clustering.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 18%] Built target tinyexpr +[ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -[ 18%] Generating ../generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h +[ 20%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh +[ 21%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh +[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 19%] Generating ../generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h -[ 19%] Generating ../generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h -/usr/bin/ranlib libmicrotar.a +[ 21%] Generating ../generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h -[ 20%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h -[ 20%] Built target microtar cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h -[ 20%] Generating ../generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp +[ 22%] Generating ../generated/translated_search.sh.h +[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 23%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 21%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h +[ 24%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -[ 21%] Generating ../generated/multihitdb.sh.h -[ 21%] Generating ../generated/multihitsearch.sh.h -[ 22%] Generating ../generated/enrich.sh.h +[ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 22%] Generating ../generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp +[ 24%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp +[ 25%] Generating ../generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h -[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen +[ 25%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh +[ 25%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp -[ 23%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h +[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp -[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -[ 26%] Generating ../generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h -[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 28%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd 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-I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, - from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ - 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ + 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) + | ^~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, + from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: note: in definition of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ - 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) - | ^~ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ + 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o @@ -2698,10 +2802,10 @@ [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/tantan.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp @@ -2855,22 +2959,20 @@ | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -2879,7 +2981,7 @@ | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -2890,19 +2992,9 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -2913,18 +3005,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: @@ -2938,8 +3028,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: @@ -2959,8 +3047,18 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -2999,6 +3097,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o @@ -3019,16 +3123,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -3048,6 +3142,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: @@ -3067,12 +3163,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -3087,14 +3185,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: @@ -3114,6 +3206,25 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o @@ -3122,29 +3233,12 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -3164,8 +3258,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: @@ -3173,12 +3267,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: @@ -3186,6 +3282,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: @@ -3193,24 +3291,30 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o @@ -3223,8 +3327,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: @@ -3232,10 +3334,19 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o @@ -3248,19 +3359,19 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o @@ -3279,17 +3390,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: @@ -3309,6 +3409,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o @@ -3321,12 +3425,6 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: @@ -3354,6 +3452,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o @@ -3368,6 +3472,18 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o @@ -3386,32 +3502,20 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-12-113e3+ds/src/MMseqsBase.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: + from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: + from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { @@ -3421,454 +3525,434 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 /usr/bin/ar qc libmmseqs-framework.a CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o 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directory '/build/mmseqs2-12-113e3+ds/build_avx' - cd build_sse4.1 && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen + cd build_sse4.1 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse4.1/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/data /build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp/CMakeFiles/alp.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp/CMakeFiles/alp.dir/depend.internal". -Scanning dependencies of target cacode -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/depend.internal". -Scanning dependencies of target ksw2 +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/src/version/CMakeFiles/version.dir/depend.internal". -Scanning dependencies of target generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Scanning dependencies of target version -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/depend.internal". +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -Scanning dependencies of target microtar -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +Scanning dependencies of target ksw2 +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen Scanning dependencies of target tinyexpr -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/data/CMakeFiles/generated.dir/depend.internal". +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +Scanning dependencies of target generated +Scanning dependencies of target cacode +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -Scanning dependencies of target alp +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +Scanning dependencies of target microtar +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build +[ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +[ 0%] Generating ../generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build [ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 1%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +[ 2%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -[ 1%] Generating ../generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o [ 2%] Generating ../generated/nucleotide.out.h -[ 4%] Generating ../generated/VTML40.out.h -[ 4%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -[ 5%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -[ 5%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 5%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c -[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h -[ 7%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h +[ 3%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +[ 4%] Generating ../generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp +Scanning dependencies of target alp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h +[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +[ 7%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 8%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp +[ 8%] Built target version +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp [ 8%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -[ 9%] Generating ../generated/cs219.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h +[ 9%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 9%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h +[ 10%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake [ 10%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 11%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +[ 10%] Built target microtar +[ 11%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h +[ 13%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -/usr/bin/ranlib libversion.a cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 11%] Built target version -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -[ 11%] Generating ../generated/easysearch.sh.h +[ 13%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h -[ 11%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp +[ 14%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 14%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -[ 12%] Generating ../generated/easytaxonomy.sh.h -[ 12%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp +/usr/bin/ranlib libtinyexpr.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 14%] Built target tinyexpr +[ 15%] Generating ../generated/easytaxonomy.sh.h +[ 16%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +[ 16%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h -[ 14%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h -[ 14%] Generating ../generated/blastpgp.sh.h -[ 15%] Generating ../generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h +[ 17%] Generating ../generated/map.sh.h +[ 17%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h -[ 15%] Generating ../generated/rbh.sh.h -[ 16%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h +[ 17%] Built target cacode +[ 17%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +[ 18%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp -[ 16%] Generating ../generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h +[ 18%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h -[ 16%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp -[ 17%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h -[ 18%] Generating ../generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp +[ 18%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 18%] Generating ../generated/searchtargetprofile.sh.h +[ 19%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h +[ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh -[ 19%] Generating ../generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp +[ 20%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h -[ 19%] Generating ../generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h +[ 20%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h -[ 19%] Built target microtar -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -[ 20%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +[ 21%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -[ 21%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp +[ 21%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h [ 22%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h [ 22%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -[ 22%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -[ 23%] Generating ../generated/enrich.sh.h +[ 22%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp +[ 24%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 23%] Generating ../generated/blastn.sh.h -[ 24%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 24%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h -[ 24%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h +[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h +[ 25%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -[ 25%] Generating ../generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 25%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h.tmp +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f 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CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -3879,13 +3963,13 @@ | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -3898,13 +3982,13 @@ | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -3915,6 +3999,26 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o @@ -3955,17 +4059,17 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/tantan.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -4146,14 +4240,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -4162,7 +4252,7 @@ | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -4173,9 +4263,15 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -4186,8 +4282,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: @@ -4207,12 +4301,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -4232,8 +4330,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: @@ -4253,13 +4349,21 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp @@ -4275,8 +4379,12 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -4296,16 +4404,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: @@ -4325,8 +4423,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -4341,6 +4439,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: @@ -4370,6 +4474,13 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o @@ -4378,35 +4489,16 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: @@ -4420,6 +4512,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: @@ -4427,10 +4521,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: @@ -4438,10 +4536,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: @@ -4449,22 +4545,30 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar 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-fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o @@ -4473,23 +4577,30 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar 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-fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: + from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o @@ -4500,13 +4611,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o @@ -4517,35 +4621,27 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp In 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src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o @@ -4596,10 +4700,6 @@ | ^~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -4608,6 +4708,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o @@ -4628,28 +4732,28 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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-I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o @@ -4658,8 +4762,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-12-113e3+ds/src/MMseqsBase.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -4672,467 +4774,441 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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'/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/src/version /build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/data /build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/data /build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/src/version /build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= +Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/depend.internal". +Scanning dependencies of target generated +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". 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Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -Scanning dependencies of target version -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +[ 0%] Generating ../generated/VTML80.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out +[ 0%] Generating ../generated/nucleotide.out.h +[ 1%] Generating ../generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out +[ 2%] Generating ../generated/blosum62.out.h +Scanning dependencies of target ksw2 +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -Scanning dependencies of target tinyexpr +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +[ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +Scanning dependencies of target version +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -[ 0%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp -[ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -Scanning dependencies of target alp -[ 1%] Generating ../generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +[ 3%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -[ 1%] Generating ../generated/PAM30.out.h -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -[ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +[ 3%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +Scanning dependencies of target tinyexpr +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +Scanning dependencies of target cacode +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -[ 4%] Generating ../generated/VTML40.out.h +[ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c -[ 4%] Generating ../generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -[ 5%] Generating ../generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp +Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/depend.internal". +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h +[ 5%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +[ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +[ 5%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -[ 7%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ranlib libversion.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp +[ 6%] Built target version +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h +[ 7%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp +[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h +Scanning dependencies of target alp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h -[ 8%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 8%] Generating ../generated/libPolished_8.lib.h +[ 7%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -[ 9%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -[ 9%] Generating ../generated/krona_prelude.html.h +[ 8%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h -[ 11%] Generating ../generated/result_viz_prelude.html.zst.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h +[ 9%] Generating ../generated/krona_prelude.html.h +[ 10%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h +[ 10%] Generating ../generated/easysearch.sh.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h -/usr/bin/ranlib libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 11%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +[ 10%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 11%] Built target version cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h -[ 11%] Generating ../generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o [ 12%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen [ 12%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h -[ 13%] Generating ../generated/blastp.sh.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h +[ 12%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h +[ 13%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp +[ 13%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +/usr/bin/ranlib libmicrotar.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +[ 14%] Built target microtar +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h [ 14%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h [ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h [ 15%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -[ 16%] Generating ../generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp -[ 16%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h +[ 16%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +[ 17%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h +[ 17%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 17%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +[ 17%] Built target cacode +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp [ 17%] Generating ../generated/cascaded_clustering.sh.h -[ 18%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h -[ 19%] Generating ../generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h +[ 18%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp [ 19%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h -[ 19%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h +[ 20%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 21%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp -[ 19%] Built target microtar +[ 21%] Generating ../generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h -[ 20%] Generating ../generated/translated_search.sh.h +/usr/bin/ranlib libtinyexpr.a +[ 22%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h -[ 20%] Generating ../generated/taxonomy.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -[ 21%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h +[ 22%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -[ 21%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h -[ 22%] Generating ../generated/multihitsearch.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp +[ 22%] Built target tinyexpr +[ 23%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h +[ 24%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +[ 24%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h -[ 23%] Generating ../generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp +[ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -[ 24%] Generating ../generated/blastn.sh.h -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp -[ 25%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp +[ 26%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp -[ 26%] Generating ../generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp +[ 27%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h -[ 26%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp +[ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h -[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp -cd 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CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, - from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: @@ -5152,6 +5228,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, + from /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: @@ -5171,13 +5255,33 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp +[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp @@ -5217,14 +5321,6 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -5286,6 +5382,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] @@ -5363,30 +5461,34 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: @@ -5400,20 +5502,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: @@ -5427,8 +5515,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: @@ -5442,10 +5538,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: @@ -5465,8 +5559,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -5486,10 +5588,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: @@ -5509,6 +5609,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o @@ -5516,8 +5620,8 @@ [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxseqdb.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp @@ -5527,12 +5631,6 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -5552,6 +5650,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -5579,8 +5683,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -5595,14 +5697,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: @@ -5622,16 +5716,20 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd 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-I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: @@ -5639,6 +5737,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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/build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o @@ -5647,14 +5751,6 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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-I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -5674,8 +5770,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: @@ -5683,10 +5777,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: @@ -5694,8 +5788,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: @@ -5703,6 +5803,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o @@ -5711,18 +5815,18 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o @@ -5733,10 +5837,6 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: @@ -5744,18 +5844,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: @@ -5763,6 +5859,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o @@ -5775,6 +5879,13 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o @@ -5783,27 +5894,8 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: @@ -5823,11 +5915,23 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp @@ -5852,12 +5956,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -5866,6 +5964,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o @@ -5884,14 +5988,20 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o @@ -5901,19 +6011,13 @@ [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-12-113e3+ds/src/MMseqsBase.cpp In file included from 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cmake_progress_start /build/mmseqs2-12-113e3+ds/build_ssse3/CMakeFiles 0 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' - cd build_sse3 && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen + cd build_sse3 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse3/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/src/version /build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/data /build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/src/version/CMakeFiles/version.dir/depend.internal". -Scanning dependencies of target cacode -Scanning dependencies of target ksw2 -Scanning dependencies of target version -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +Scanning dependencies of target version +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/data /build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/depend.internal". +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/depend.internal". +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build Scanning dependencies of target microtar -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/depend.internal". -Scanning dependencies of target generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". +Scanning dependencies of target ksw2 +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten Scanning dependencies of target tinyexpr -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +Scanning dependencies of target cacode +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/data/CMakeFiles/generated.dir/depend.internal". +[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +Scanning dependencies of target generated +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +[ 0%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +[ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -[ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -Scanning dependencies of target alp -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -[ 1%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp -[ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -[ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -[ 4%] Generating ../generated/VTML40.out.h -[ 4%] Generating ../generated/VTML80.out.h -[ 5%] Generating ../generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -[ 5%] Generating ../generated/nucleotide.out.h +[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +[ 3%] Generating ../generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -[ 5%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +[ 4%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h +/usr/bin/ranlib libversion.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h +[ 4%] Built target version +[ 4%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out +[ 5%] Generating ../generated/VTML40.out.h +[ 6%] Generating ../generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp +Scanning dependencies of target alp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h +[ 6%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 7%] Generating ../generated/Library255_may17.lib.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp -[ 8%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h -[ 8%] Generating ../generated/libPolished_8.lib.h +[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +[ 9%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -[ 9%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -[ 9%] Generating ../generated/krona_prelude.html.h +[ 10%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 11%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h -/usr/bin/ranlib libversion.a +[ 10%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h +[ 12%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -[ 11%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h +[ 12%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 11%] Built target version cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h -[ 11%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h +[ 12%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h [ 13%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h -[ 13%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h +[ 13%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 14%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 15%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h +[ 14%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh +[ 14%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 16%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +[ 15%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h -[ 16%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 16%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h -[ 17%] Generating ../generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -[ 17%] Linking C static library libmicrotar.a +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +[ 15%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h +[ 15%] Built target cacode +[ 16%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h +[ 16%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp +/usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -[ 18%] Generating ../generated/cascaded_clustering.sh.h -/usr/bin/ranlib libmicrotar.a -[ 19%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +[ 16%] Built target microtar +[ 16%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 19%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h +[ 17%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h +[ 17%] Generating ../generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +[ 18%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h -[ 20%] Generating ../generated/createindex.sh.h -[ 20%] Built target microtar cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h -[ 21%] Generating ../generated/createtaxdb.sh.h -[ 21%] Generating ../generated/translated_search.sh.h +[ 18%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -[ 21%] Generating ../generated/taxonomy.sh.h +[ 19%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h -[ 22%] Generating ../generated/taxpercontig.sh.h -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp +[ 19%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h -[ 23%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +[ 21%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +[ 21%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h -[ 23%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp +[ 21%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 24%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h +[ 21%] Built target ksw2 +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h +[ 22%] Generating ../generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h -[ 24%] Generating ../generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h +[ 22%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h +[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h -[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp +[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 25%] Generating ../generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +[ 24%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 26%] Generating ../generated/databases.sh.h +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +[ 25%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -[ 26%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp +[ 25%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp -[ 27%] Built target generated -[ 28%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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27%] Built target generated cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o 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-D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -6391,13 +6475,13 @@ | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -6408,19 +6492,15 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -6431,6 +6511,30 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o @@ -6481,8 +6585,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -6621,24 +6723,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -6658,10 +6752,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -6681,6 +6771,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -6700,6 +6792,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: @@ -6719,12 +6813,20 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -6744,8 +6846,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: @@ -6765,9 +6865,13 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/filtertaxdb.cpp @@ -6785,10 +6889,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -6808,8 +6908,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -6835,16 +6935,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -6853,6 +6953,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: @@ -6872,20 +6976,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: @@ -6893,6 +6991,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o @@ -6905,20 +7009,12 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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/build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: + from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o @@ -6971,12 +7081,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o @@ -6989,8 +7093,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: @@ -6998,12 +7100,21 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o @@ -7012,17 +7123,10 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2rbh.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o @@ -7031,6 +7135,13 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o @@ -7039,13 +7150,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o @@ -7085,14 +7189,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering 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-I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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entrySize; j++) { | ~~^~~~~~~~~~~ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o @@ -7138,8 +7242,20 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o @@ -7152,18 +7268,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o @@ -7189,455 +7293,435 @@ cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 /usr/bin/ar qc libmmseqs-framework.a CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o 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Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/data/CMakeFiles/generated.dir/depend.internal". -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' Scanning dependencies of target generated -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' -Scanning dependencies of target alp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' +Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse2/src/version/CMakeFiles/version.dir/depend.internal". +Scanning dependencies of target version +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten +[ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +[ 0%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -[ 1%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -[ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 1%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o [ 1%] Generating ../generated/VTML80.out.h -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c -[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -[ 3%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 4%] Generating ../generated/VTML40.out.h -[ 4%] Generating ../generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +[ 2%] Generating ../generated/blosum62.out.h +[ 2%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -[ 6%] Generating ../generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out +[ 3%] Generating ../generated/VTML40.out.h +Scanning dependencies of target cacode +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 7%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +[ 3%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h +[ 5%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h +[ 5%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h +Scanning dependencies of target alp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten +/usr/bin/ranlib libversion.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 6%] Built target version cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -[ 8%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/ExpOpt3_8_polished.cs32.lib.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -[ 9%] Generating ../generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -[ 9%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 8%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/build_sse2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h +[ 8%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h -[ 10%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h +[ 9%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -/usr/bin/ranlib libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h -[ 10%] Built target version -[ 11%] Generating ../generated/result_viz_prelude.html.zst.h +[ 9%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/libPolished_8.lib.h +[ 10%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -[ 11%] Generating ../generated/easycluster.sh.h -[ 11%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +[ 10%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 12%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h +[ 10%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h.tmp +[ 11%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/cs219.lib.h +[ 11%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easytaxonomy.sh.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -[ 14%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -[ 15%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 15%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h +[ 12%] Generating ../generated/blastp.sh.h +[ 12%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h -[ 15%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -[ 16%] Generating ../generated/map.sh.h +[ 13%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -[ 16%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -[ 17%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h +[ 13%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h -[ 17%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h +[ 14%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h.tmp +[ 14%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/clustering.sh.h -[ 17%] Built target microtar -[ 17%] Generating ../generated/cascaded_clustering.sh.h -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -[ 19%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/result_viz_prelude.html.zst.h +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +[ 14%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h -[ 19%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h +[ 14%] Generating ../generated/searchtargetprofile.sh.h +[ 15%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h -[ 20%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h +[ 16%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/cascaded_clustering.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -[ 21%] Generating ../generated/createtaxdb.sh.h -[ 22%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh +[ 17%] Generating ../generated/translated_search.sh.h +[ 17%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 22%] Generating ../generated/taxonomy.sh.h -[ 23%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -[ 23%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h +[ 18%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +[ 19%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +[ 19%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h.tmp +[ 19%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/taxpercontig.sh.h -[ 23%] Generating ../generated/multihitsearch.sh.h -[ 24%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitdb.sh.h +[ 19%] Built target cacode +[ 20%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh +[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 21%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -[ 24%] Generating ../generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h +[ 21%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h -[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +/usr/bin/ranlib libmicrotar.a +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/enrich.sh.h +[ 21%] Built target microtar +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h -[ 25%] Generating ../generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -[ 26%] Generating ../generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh +[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated -[ 26%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h +[ 23%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h +[ 23%] Built target ksw2 +[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h.tmp +[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h +[ 24%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h.tmp +[ 24%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/nucleotide_clustering.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' -[ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp -[ 27%] Built target generated -[ 28%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h.tmp +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse2/generated/databases.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen +[ 25%] Built target generated +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +[ 27%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/build_sse2/lib/tinyexpr && /usr/bin/cmake -P 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-g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse2 /build/mmseqs2-12-113e3+ds/build_sse2/src /build/mmseqs2-12-113e3+ds/build_sse2/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee 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-I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -7684,6 +7768,26 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o @@ -7718,10 +7822,10 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Sequence.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/tantan.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o @@ -7736,12 +7840,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -7847,7 +7945,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] @@ -7870,7 +7967,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] @@ -7882,20 +7978,26 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -7915,12 +8017,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: @@ -7940,10 +8036,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: @@ -7957,6 +8049,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: @@ -7976,10 +8072,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -7999,10 +8099,8 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: @@ -8022,6 +8120,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o @@ -8040,12 +8144,12 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -8065,14 +8169,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: + from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: @@ -8092,14 +8198,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -8108,12 +8214,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/clusthash.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: @@ -8133,20 +8233,18 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/compress.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: @@ -8154,28 +8252,24 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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-I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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/build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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-c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:5: @@ -8196,8 +8290,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: @@ -8205,10 +8303,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: @@ -8216,12 +8310,28 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o @@ -8230,12 +8340,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o @@ -8248,8 +8352,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: @@ -8257,10 +8359,19 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o @@ -8269,13 +8380,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2flat.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o @@ -8286,6 +8390,13 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o @@ -8298,23 +8409,10 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: @@ -8334,6 +8432,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o @@ -8342,10 +8446,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: @@ -8365,12 +8465,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -8379,6 +8473,16 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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-I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/proteinaln2nucl.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o @@ -8395,6 +8499,12 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o @@ -8408,12 +8518,6 @@ [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] @@ -8425,475 +8529,455 @@ cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/CreateIndex.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-12-113e3+ds/src/MMseqsBase.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: + from /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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Scanning dependencies of target mmseqs-sse2 -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen make -f src/CMakeFiles/mmseqs-sse2.dir/build.make src/CMakeFiles/mmseqs-sse2.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten [ 99%] Building CXX object src/CMakeFiles/mmseqs-sse2.dir/mmseqs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-sse2.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs-sse2 cd /build/mmseqs2-12-113e3+ds/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-sse2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs-sse2.dir/mmseqs.cpp.o -o mmseqs-sse2 libmmseqs-framework.a version/libversion.a /usr/lib/i386-linux-gnu/libatomic.so.1 ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen [100%] Built target mmseqs-sse2 -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse2/CMakeFiles 0 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' - cd build_sse && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen + cd build_sse && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/alp /build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/src/version /build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_sse /build/mmseqs2-12-113e3+ds/build_sse/data /build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/build_sse 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Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/microtar/CMakeFiles/microtar.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/depend.internal". -Scanning dependencies of target microtar Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/alp/CMakeFiles/alp.dir/depend.internal". -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -Scanning dependencies of target cacode -Dependee "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -Scanning dependencies of target tinyexpr -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' Dependee "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/version/CMakeFiles/version.dir/depend.internal". -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' Scanning dependencies of target ksw2 -Scanning dependencies of target version -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -[ 0%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -[ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -Scanning dependencies of target alp -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -[ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -[ 3%] Generating ../generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -[ 4%] Generating ../generated/nucleotide.out.h -[ 4%] Generating ../generated/VTML80.out.h -[ 5%] Generating ../generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +Scanning dependencies of target microtar +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +[ 1%] Generating ../generated/VTML40.out.h +Scanning dependencies of target cacode cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -[ 5%] Generating ../generated/PAM30.out.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +[ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp +[ 2%] Generating ../generated/VTML80.out.h +[ 2%] Generating ../generated/nucleotide.out.h +Scanning dependencies of target version +[ 2%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -[ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 5%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -[ 6%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -[ 7%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +Scanning dependencies of target tinyexpr cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -[ 7%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +[ 3%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +[ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +[ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +[ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h.tmp +[ 5%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +[ 5%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h +[ 6%] Built target version +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +Scanning dependencies of target alp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +[ 7%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/VTML80.out.h +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/PAM30.out.h -[ 8%] Linking CXX static library libversion.a -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -[ 9%] Generating ../generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -[ 9%] Generating ../generated/libPolished_8.lib.h -[ 10%] Generating ../generated/cs219.lib.h +[ 7%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/build_sse/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h.tmp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -/usr/bin/ranlib libversion.a -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/libPolished_8.lib.h +[ 8%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h +[ 8%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiag.lib.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -[ 12%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 8%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h +[ 8%] Generating ../generated/easysearch.sh.h +[ 9%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -[ 12%] Generating ../generated/easysearch.sh.h +[ 9%] Generating ../generated/easycluster.sh.h +[ 10%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h -[ 12%] Generating ../generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -[ 12%] Built target version -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +/usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h -[ 13%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -[ 14%] Linking C static library libmicrotar.a -[ 14%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easycluster.sh.h +[ 10%] Built target microtar +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easysearch.sh.h +[ 11%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easytaxonomy.sh.h -[ 14%] Generating ../generated/blastpgp.sh.h -[ 15%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +[ 11%] Generating ../generated/easyrbh.sh.h +[ 12%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/result_viz_prelude.html.zst.h -[ 16%] Generating ../generated/map.sh.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/easyrbh.sh.h +[ 13%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h +[ 14%] Generating ../generated/map.sh.h +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h.tmp +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastpgp.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -[ 17%] Generating ../generated/linclust.sh.h -[ 17%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h +[ 15%] Generating ../generated/rbh.sh.h +[ 15%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +[ 16%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/map.sh.h -[ 17%] Built target microtar [ 17%] Generating ../generated/clustering.sh.h -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/linclust.sh.h -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -[ 18%] Generating ../generated/cascaded_clustering.sh.h +[ 17%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h.tmp +[ 18%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h.tmp +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h.tmp +[ 18%] Built target tinyexpr +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/clustering.sh.h [ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated [ 19%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 20%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/searchtargetprofile.sh.h [ 20%] Generating ../generated/createtaxdb.sh.h -[ 21%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +[ 21%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh -[ 21%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h.tmp +[ 21%] Generating ../generated/taxonomy.sh.h +[ 22%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/krona_prelude.html.h -[ 23%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h.tmp -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/taxpercontig.sh.h -[ 23%] Generating ../generated/multihitdb.sh.h +[ 22%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h -[ 23%] Generating ../generated/multihitsearch.sh.h +[ 22%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh +[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h [ 24%] Generating ../generated/enrich.sh.h -[ 24%] Generating ../generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h +[ 24%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/enrich.sh.h -[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 25%] Generating ../generated/linsearch.sh.h +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h -[ 26%] Generating ../generated/databases.sh.h +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h +[ 27%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh -[ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < 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-I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -8904,13 +8988,13 @@ | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -8921,17 +9005,15 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:8: + from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -8942,6 +9024,28 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o @@ -8990,16 +9094,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -9138,12 +9232,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -9156,8 +9252,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp:1: @@ -9171,29 +9265,17 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -9204,9 +9286,17 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ReducedMatrix.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -9217,13 +9307,15 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: + from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.cpp:2: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) @@ -9234,8 +9326,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -9255,8 +9353,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp:12: @@ -9276,6 +9372,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/Aggregation.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitDb.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o @@ -9289,8 +9393,8 @@ [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/createtaxdb.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/mmseqs2-12-113e3+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp @@ -9299,15 +9403,11 @@ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmermatcher.cpp:15: @@ -9327,8 +9427,18 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/kmerindexdb.cpp:3: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/linclust/kmersearch.cpp:5: @@ -9348,14 +9458,27 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp:6: +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/apply.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] + 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) + | ^ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ + 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ + 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); + | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -9374,35 +9497,12 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] - 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) - | ^ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ - 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ - 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); - | ^~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: @@ -9410,22 +9510,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -9445,6 +9537,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: @@ -9452,8 +9548,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: @@ -9461,10 +9561,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: @@ -9472,6 +9568,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o @@ -9480,18 +9584,18 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o @@ -9502,10 +9606,6 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: @@ -9513,14 +9613,14 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: @@ -9528,6 +9628,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o @@ -9542,6 +9646,13 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o @@ -9552,25 +9663,8 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp:11: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: @@ -9590,16 +9684,22 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: @@ -9619,6 +9719,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o @@ -9655,36 +9759,34 @@ cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization 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CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o ../lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o /usr/bin/ranlib libmmseqs-framework.a -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen [ 99%] Built target mmseqs-framework make -f src/CMakeFiles/mmseqs-sse.dir/build.make src/CMakeFiles/mmseqs-sse.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten cd /build/mmseqs2-12-113e3+ds/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/build_sse 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Dependee "/build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse/src/CMakeFiles/mmseqs-sse.dir/depend.internal". Scanning dependencies of target mmseqs-sse -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen make -f src/CMakeFiles/mmseqs-sse.dir/build.make src/CMakeFiles/mmseqs-sse.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten [ 99%] Building CXX object src/CMakeFiles/mmseqs-sse.dir/mmseqs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-sse.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs-sse cd /build/mmseqs2-12-113e3+ds/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-sse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs-sse.dir/mmseqs.cpp.o -o mmseqs-sse libmmseqs-framework.a version/libversion.a /usr/lib/i386-linux-gnu/libatomic.so.1 ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[4]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen [100%] Built target mmseqs-sse -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse/CMakeFiles 0 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true - cd build_avx2 && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' + cd build_avx2 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-avx2 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' - cd build_avx && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx2“ wird verlassen + cd build_avx && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-avx -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' - cd build_sse4.1 && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_avx“ wird verlassen + cd build_sse4.1 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse4.1 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' - cd build_ssse3 && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse4.1“ wird verlassen + cd build_ssse3 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-ssse3 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' - cd build_sse3 && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_ssse3“ wird verlassen + cd build_sse3 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse3 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse3“ wird verlassen dh_auto_install --builddirectory build_sse2 && dh_auto_install --builddirectory build_sse && true - cd build_sse2 && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' + cd build_sse2 && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse2' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse2 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse2' - cd build_sse && make -j18 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse2“ wird verlassen + cd build_sse && make -j10 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird betreten +make[3]: Für das Ziel „preinstall“ ist nichts zu tun. +make[3]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse' +make[2]: Verzeichnis „/build/mmseqs2-12-113e3+ds/build_sse“ wird verlassen dh_install -pmmseqs2 usr/bin/mmseqs-* usr/bin/ set -e && cd /build/mmseqs2-12-113e3+ds/debian/mmseqs2/usr/bin \ && for prog in mmseqs ; do \ ln -s ../lib/mmseqs2/simd-dispatch ${prog} ; done -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen debian/rules override_dh_install-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_install --arch mkdir -p debian/mmseqs2/usr/lib/mmseqs2/test cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test/ @@ -9832,15 +9936,15 @@ rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen debian/rules override_dh_install-indep -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_install --indep # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/*.lib \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiag.out \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiagTargetCov.out -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen dh_installdocs dh_installchangelogs dh_installman @@ -9856,26 +9960,27 @@ dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird betreten dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: Verzeichnis „/build/mmseqs2-12-113e3+ds“ wird verlassen dh_md5sums dh_builddeb -dpkg-deb: building package 'mmseqs2' in '../mmseqs2_12-113e3+ds-3_i386.deb'. -dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_12-113e3+ds-3_i386.deb'. -dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_12-113e3+ds-3_all.deb'. +dpkg-deb: Paket »mmseqs2« wird in »../mmseqs2_12-113e3+ds-3_i386.deb« gebaut. +dpkg-deb: Paket »mmseqs2-examples« wird in »../mmseqs2-examples_12-113e3+ds-3_all.deb« gebaut. +dpkg-deb: Paket »mmseqs2-dbgsym« wird in »../mmseqs2-dbgsym_12-113e3+ds-3_i386.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmseqs2_12-113e3+ds-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -I: copying local configuration +I: user script /srv/workspace/pbuilder/19453/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19453/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/46861 and its subdirectories -I: Current time: Thu Jun 23 16:45:03 -12 2022 -I: pbuilder-time-stamp: 1656045903 +I: removing directory /srv/workspace/pbuilder/19453 and its subdirectories +I: Current time: Sat May 22 13:05:41 +14 2021 +I: pbuilder-time-stamp: 1621638341