Diff of the two buildlogs: -- --- b1/build.log 2021-08-12 11:06:03.645082276 +0000 +++ b2/build.log 2021-08-12 11:09:31.277283573 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 11 22:46:27 -12 2021 -I: pbuilder-time-stamp: 1628765187 +I: Current time: Thu Sep 15 07:29:04 +14 2022 +I: pbuilder-time-stamp: 1663176544 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./plast_2.3.2+dfsg-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.gbMCznej/trustedkeys.kbx': General error -gpgv: Signature made Sat Jan 30 22:25:45 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.3UM1LhFf/trustedkeys.kbx': General error +gpgv: Signature made Mon Feb 1 00:25:45 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plast_2.3.2+dfsg-7.dsc @@ -33,137 +33,171 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10488/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/31209/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/31209/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/31209/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='7483db431b1141c2a8495357a3d3b559' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='10488' - PS1='# ' - PS2='> ' + INVOCATION_ID=65af12ae28304ea298f3e8e2eefdb9bb + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=31209 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.i7K5szTjpQ/pbuilderrc_8p6Z --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.i7K5szTjpQ/b1 --logfile b1/build.log plast_2.3.2+dfsg-7.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.i7K5szTjpQ/pbuilderrc_LvTa --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.i7K5szTjpQ/b2 --logfile b2/build.log --extrapackages usrmerge plast_2.3.2+dfsg-7.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin - total 5784 - -rwxr-xr-x 1 root root 1367848 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Jul 28 07:09 more - -rwsr-xr-x 1 root root 50720 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 13856 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 10 19:48 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Jul 28 07:09 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/10488/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Aug 5 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Jul 29 2021 more + -rwsr-xr-x 1 root root 50720 Jul 29 2021 mount + -rwxr-xr-x 1 root root 13856 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 15 07:29 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 14 05:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Jul 29 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Jul 29 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/31209/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -339,7 +373,7 @@ Get: 130 http://deb.debian.org/debian bullseye/main i386 libpcrecpp0v5 i386 2:8.39-13 [153 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libpcre3-dev i386 2:8.39-13 [656 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 libsimde-dev all 0.7.2-4 [259 kB] -Fetched 412 MB in 1min 40s (4127 kB/s) +Fetched 412 MB in 8s (53.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -913,135 +947,135 @@ update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:SecureSign_RootCA11.pem -Adding debian:GTS_Root_R4.pem -Adding debian:Entrust_Root_Certification_Authority_-_G2.pem -Adding debian:SecureTrust_CA.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:DigiCert_Global_Root_G3.pem Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:emSign_ECC_Root_CA_-_G3.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:Comodo_AAA_Services_root.pem Adding debian:DST_Root_CA_X3.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:QuoVadis_Root_CA.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:GTS_Root_R1.pem +Adding debian:emSign_ECC_Root_CA_-_G3.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:Security_Communication_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:TeliaSonera_Root_CA_v1.pem -Adding debian:AffirmTrust_Premium.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:EC-ACC.pem +Adding debian:e-Szigno_Root_CA_2017.pem +Adding debian:Baltimore_CyberTrust_Root.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Certigna.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem -Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:Starfield_Class_2_CA.pem +Adding debian:COMODO_RSA_Certification_Authority.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem -Adding debian:NAVER_Global_Root_Certification_Authority.pem -Adding debian:Secure_Global_CA.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Amazon_Root_CA_3.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:Entrust_Root_Certification_Authority_-_G4.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:COMODO_Certification_Authority.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:GlobalSign_Root_CA_-_R6.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:Izenpe.com.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:TWCA_Root_Certification_Authority.pem +Adding debian:NAVER_Global_Root_Certification_Authority.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:XRamp_Global_CA_Root.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem +Adding debian:AffirmTrust_Commercial.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:SZAFIR_ROOT_CA2.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:emSign_Root_CA_-_C1.pem Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:Cybertrust_Global_Root.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:Hongkong_Post_Root_CA_3.pem -Adding debian:Izenpe.com.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:Network_Solutions_Certificate_Authority.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:emSign_ECC_Root_CA_-_C3.pem +Adding debian:QuoVadis_Root_CA_2.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:certSIGN_Root_CA_G2.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:GTS_Root_R2.pem Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:GTS_Root_R4.pem +Adding debian:DigiCert_Assured_ID_Root_G3.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Certigna_Root_CA.pem -Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem -Adding debian:GTS_Root_R3.pem -Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem -Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:emSign_ECC_Root_CA_-_C3.pem -Adding debian:GlobalSign_Root_CA.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:Global_Chambersign_Root_-_2008.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:ISRG_Root_X1.pem +Adding debian:UCA_Extended_Validation_Root.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:GTS_Root_R2.pem -Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_ECA-1.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:GTS_Root_R1.pem -Adding debian:EC-ACC.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:Trustwave_Global_Certification_Authority.pem -Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem -Adding debian:XRamp_Global_CA_Root.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:certSIGN_Root_CA_G2.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:Amazon_Root_CA_1.pem +Adding debian:Entrust_Root_Certification_Authority_-_G4.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem +Adding debian:Hongkong_Post_Root_CA_3.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem +Adding debian:Cybertrust_Global_Root.pem +Adding debian:Secure_Global_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem -Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem +Adding debian:Trustwave_Global_Certification_Authority.pem +Adding debian:SecureTrust_CA.pem Adding debian:emSign_Root_CA_-_G1.pem -Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:UCA_Extended_Validation_Root.pem -Adding debian:emSign_Root_CA_-_C1.pem -Adding debian:e-Szigno_Root_CA_2017.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:COMODO_ECC_Certification_Authority.pem -Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem +Adding debian:SecureSign_RootCA11.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:GTS_Root_R3.pem done. Setting up default-jdk (2:1.11-72) ... Processing triggers for libc-bin (2.31-13) ... @@ -1060,8 +1094,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1781 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26957 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -1202,7 +1272,7 @@ set -e ; for SIMD in sse3 ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done - cd obj-sse3 && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-sse3 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse3' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles /build/plast-2.3.2+dfsg/obj-sse3//CMakeFiles/progress.marks @@ -1218,192 +1288,284 @@ Dependee "/build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/plast.dir/depend.internal". Dependee "/build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/PlastLibrary.dir/DependInfo.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/PlastLibrary.dir/depend.internal". Dependee "/build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/PlastLibrary.dir/depend.internal". +Scanning dependencies of target plast Scanning dependencies of target PlastLibrary make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse3' +make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build +make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build +make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse3' make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse3' -[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp +[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp -[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -[ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp +[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp +[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o +[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o +[ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp +[ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp +[ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp +[ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp +[ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp +[ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -1435,173 +1597,142 @@ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp -[ 32%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp -[ 32%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp -[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp -[ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp -[ 34%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp -[ 34%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp -[ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -[ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp -[ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o +[ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp +[ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp -[ 35%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp -[ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -[ 36%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp +[ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp -[ 36%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp -[ 37%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp -[ 53%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp -[ 54%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ReverseStrandVisitor.cpp -[ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o +[ 59%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp +[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp -[ 55%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp -[ 56%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +[ 61%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o +[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o +[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o +[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -[ 57%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 200 | fread (&magic, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 211 | fread (&len, sizeof(size_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 215 | fread (buffer, sizeof(char), len, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 247 | fread (&nbOffsets, sizeof(size_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 253 | fread (&offset, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp -[ 57%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 63%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -1615,14 +1746,14 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ +[ 63%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp +[ 64%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -1642,12 +1773,10 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 60%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -1670,68 +1799,106 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o +[ 65%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp +[ 65%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp +[ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 67%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp +[ 67%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp +[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 61%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp -[ 61%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp -[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o +[ 67%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp +[ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp -[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o +[ 69%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp +[ 73%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp +[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp +[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -[ 64%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 119 | system (tmp); + | ~~~~~~~^~~~~ +[ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp +[ 79%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp -[ 71%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c -[ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp -[ 72%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o +[ 80%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp +[ 81%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c -[ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp -[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o +[ 82%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c +[ 82%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp +/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static + 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); + | ^~~~~~~~~~~~~~ +[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp -[ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp -[ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 82%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp +[ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp +[ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp +[ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp +[ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp +[ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp +[ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", @@ -1783,131 +1957,23 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 200 | fread (&magic, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 211 | fread (&len, sizeof(size_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 215 | fread (buffer, sizeof(char), len, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 247 | fread (&nbOffsets, sizeof(size_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 253 | fread (&offset, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 75%] Linking CXX shared library lib/None/libPlastLibrary.so -[ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp -/usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libPlastLibrary.so -o lib/None/libPlastLibrary.so CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o 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CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp -[ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp -[ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -1921,12 +1987,12 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -1946,6 +2012,24 @@ | | | | long int size_t {aka unsigned int} | %02d +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o +[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp +make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse3' +[ 91%] Built target PlastLibrary /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -1957,6 +2041,7 @@ | ~ | | | size_t {aka unsigned int} +[ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", @@ -1968,21 +2053,6 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp -[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp -[ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -2004,16 +2074,16 @@ /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp -[ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 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/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp +[ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o @@ -2076,7 +2146,7 @@ set -e ; for SIMD in sse2 sse ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done - cd obj-sse2 && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-sse2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse2' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-sse2/CMakeFiles /build/plast-2.3.2+dfsg/obj-sse2//CMakeFiles/progress.marks @@ -2095,222 +2165,339 @@ Scanning dependencies of target plast Scanning dependencies of target PlastLibrary make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse2' -make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse2' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build +make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse2' make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse2' +[ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o +[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp +[ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp -[ 31%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o +[ 45%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp -[ 31%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o +[ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp +[ 45%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp -[ 32%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o +[ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp -[ 32%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp -[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp -[ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp -[ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp -[ 33%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 200 | fread (&magic, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 211 | fread (&len, sizeof(size_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 215 | fread (buffer, sizeof(char), len, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 247 | fread (&nbOffsets, sizeof(size_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 253 | fread (&offset, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp -[ 34%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o +[ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp -[ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp -[ 34%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o +[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp +[ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp -[ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp -[ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o +[ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp -[ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o +[ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -2343,151 +2530,142 @@ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include 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39%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 119 | system (tmp); + | ~~~~~~~^~~~~ +[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ModelBuilderVisitor.cpp +[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o +[ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp -[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp +[ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp -[ 59%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp -[ 60%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp +[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -2501,61 +2679,10 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 60%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp -[ 61%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 62%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 200 | fread (&magic, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 211 | fread (&len, sizeof(size_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 215 | fread (buffer, sizeof(char), len, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 247 | fread (&nbOffsets, sizeof(size_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 253 | fread (&offset, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 63%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp +[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -2575,28 +2702,20 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include 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CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp -[ 67%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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/build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -2619,144 +2738,58 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp -[ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -[ 70%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 70%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 71%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': -/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 119 | system (tmp); - | ~~~~~~~^~~~~ -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp -[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp +[ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include 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CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp +[ 76%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp +[ 77%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] 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CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c -/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static - 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); - | ^~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp -[ 75%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -[ 75%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 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-D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp -[ 77%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp -[ 78%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp -[ 78%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp -[ 78%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp -[ 79%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp -[ 79%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp -[ 79%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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-O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp -[ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp -[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp -[ 82%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp -[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp -[ 82%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp -/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': -/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 243 | printf ("[%ld/%ld] ", i, _span); - | ~~^ ~ - | | | - | long int size_t {aka unsigned int} - | %d -/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 243 | printf ("[%ld/%ld] ", i, _span); - | ~~^ ~~~~~ - | | | - | long int size_t {aka unsigned int} - | %d -/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); - | ~~^ ~ - | | | - | long int size_t {aka unsigned int} - | %d -[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp -[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp -[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 84%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ -[ 85%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c -[ 85%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp +[ 78%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp +[ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp +[ 79%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include 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CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp +[ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp +[ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp +[ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +[ 82%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 82%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 83%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -2770,20 +2803,18 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 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CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c -[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp -[ 88%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp +[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp +[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ +[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp +[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -2803,10 +2834,24 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp +[ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp +[ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp +[ 86%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 86%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp +[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -2829,82 +2874,92 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': -/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", - | ~~^ - | | - | long int - | %d -...... - 126 | os::impl::DefaultFactory::thread().getNbCores() - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - | | - | size_t {aka unsigned int} -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system 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-/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp -[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp -[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o +[ 89%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp +[ 93%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp +[ 94%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp +[ 94%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include 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CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp +[ 95%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c +[ 95%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c +[ 96%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c +[ 96%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp +[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp -[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -[ 98%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o +[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp +[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -[ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o +/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': +/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 243 | printf ("[%ld/%ld] ", i, _span); + | ~~^ ~ + | | | + | long int size_t {aka unsigned int} + | %d +/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 243 | printf ("[%ld/%ld] ", i, _span); + | ~~^ ~~~~~ + | | | + | long int size_t {aka unsigned int} + | %d +/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); + | ~~^ ~ + | | | + | long int size_t {aka unsigned int} + | %d +[ 97%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c -[ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o +[ 97%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time 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CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o @@ -2947,7 +3017,7 @@ make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse2' /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-sse2/CMakeFiles 0 make[2]: Leaving directory '/build/plast-2.3.2+dfsg/obj-sse2' - cd obj-sse && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-sse && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-sse' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-sse --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-sse/CMakeFiles /build/plast-2.3.2+dfsg/obj-sse//CMakeFiles/progress.marks @@ -2971,240 +3041,286 @@ make 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/build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp +[ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -3240,137 +3356,195 @@ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp -[ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp -[ 43%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +[ 50%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp -[ 43%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp +[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp +[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp +[ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ModelBuilderVisitor.cpp -[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp -[ 44%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o +[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 200 | fread (&magic, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 211 | fread (&len, sizeof(size_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 215 | fread (buffer, sizeof(char), len, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 247 | fread (&nbOffsets, sizeof(size_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 253 | fread (&offset, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': +/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp +[ 52%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o 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Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp +[ 55%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': +/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 119 | system (tmp); + | ~~~~~~~^~~~~ +[ 63%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd 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CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp +[ 65%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ -[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp -[ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp -[ 54%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o +[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp +[ 66%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o +[ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include 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-I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time 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-/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o 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-I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp -[ 61%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp -[ 62%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp -[ 62%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -3384,43 +3558,14 @@ | | | | long int size_t {aka unsigned int} | %02d -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 200 | fread (&magic, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 211 | fread (&len, sizeof(size_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 215 | fread (buffer, sizeof(char), len, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 247 | fread (&nbOffsets, sizeof(size_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 253 | fread (&offset, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': -/build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -3440,12 +3585,14 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 63%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -3468,135 +3615,78 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -[ 66%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -[ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp +[ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse 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-I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp +[ 80%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp -/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': -/build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 119 | system (tmp); - | ~~~~~~~^~~~~ -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp -[ 73%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp -[ 73%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 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CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp -[ 79%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp -/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static - 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); - | ^~~~~~~~~~~~~~ -[ 79%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp -[ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp -[ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp -[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp -[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp -[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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/build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp -[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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/build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp +[ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp +[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o +[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include 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-fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp +[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp +[ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp +[ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +[ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 87%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -3610,22 +3700,8 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp -[ 85%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp -[ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 87%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); @@ -3645,6 +3721,8 @@ | | | | long int size_t {aka unsigned int} | %d +[ 88%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -3664,6 +3742,22 @@ | | | | long int size_t {aka unsigned int} | %02d +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -3675,6 +3769,8 @@ | ~ | | | size_t {aka unsigned int} +[ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", @@ -3686,80 +3782,68 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 88%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp +[ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp +[ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp +[ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp +[ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o +[ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp +/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': +/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 42 | system (ss.str().c_str()); + | ~~~~~~~^~~~~~~~~~~~~~~~~~ +[ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp +[ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o +[ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 90%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o +[ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp +[ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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-I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp +[ 97%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp +[ 97%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp -/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': -/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 42 | system (ss.str().c_str()); - | ~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp -[ 91%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o +[ 97%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c -[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp -[ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp -[ 93%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o +[ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c -[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp -[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp -[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp -[ 94%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o +/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': +/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", + | ~~^ + | | + | long int + | %d +...... + 126 | os::impl::DefaultFactory::thread().getNbCores() + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + | | + | size_t {aka unsigned int} +[ 98%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp -[ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp -[ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -[ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp -[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp -[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp -[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp -[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -[ 97%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c -[ 97%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c -[ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); @@ -3779,20 +3863,9 @@ | | | | long int size_t {aka unsigned int} | %d -[ 98%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp -/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': -/build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 120 | fprintf (stdout, "%s %s\n - Build 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Scanning dependencies of target plast -make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' -make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build Scanning dependencies of target PlastLibrary make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' +make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' +make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make[4]: Entering directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' -[ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. 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CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -4088,119 +4194,105 @@ 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-I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp +[ 59%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp +[ 59%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -4214,22 +4306,14 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp -[ 55%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp -[ 56%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include 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Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp -[ 57%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ +[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include 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CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -4249,8 +4333,20 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 58%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +[ 60%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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61%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 62%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 62%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 62%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp +[ 63%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -4273,86 +4369,76 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp -[ 59%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 60%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp -[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include 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CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp -[ 61%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 61%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 62%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp +[ 63%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +[ 63%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 62%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp -[ 62%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp -[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o +/usr/bin/c++ 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-fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp +[ 64%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp +[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -[ 64%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o +[ 65%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp -[ 65%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o +[ 66%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include 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/build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp +[ 74%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -4388,44 +4474,10 @@ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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/build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp -[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -[ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o +[ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp -[ 73%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time 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/build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp -[ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp -[ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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/build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); @@ -4445,41 +4497,52 @@ | | | | long int size_t {aka unsigned int} | %d +[ 74%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o +/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp +[ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/plast.dir/src/seg/impl/dust.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c -/build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static - 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); - | ^~~~~~~~~~~~~~ -[ 81%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -/usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include 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CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", @@ -4492,6 +4555,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} +[ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/plast.dir/src/seg/impl/dust.c.o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o CMakeFiles/plast.dir/src/seg/impl/seg.c.o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -o bin/None/plast -lpthread -lpcre +[ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp +[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp +[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -4528,16 +4608,14 @@ | | | | long int size_t {aka unsigned int} | %02d -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': -/build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ -[ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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/build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp +make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' +[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 89%] Built target plast +[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -4557,12 +4635,26 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp -[ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp +[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp +[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp +[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp +/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': +/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 46 | fgets (buffer, sizeof(buffer), file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': +/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 42 | system (ss.str().c_str()); + | ~~~~~~~^~~~~~~~~~~~~~~~~~ +[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -4585,40 +4677,20 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp -[ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp -/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': -/build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 42 | system (ss.str().c_str()); - | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp +[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp -/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': -/build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 46 | fgets (buffer, sizeof(buffer), file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp -[ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp +[ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o @@ -4631,9 +4703,9 @@ /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp -[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o +[ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp +[ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp @@ -4645,7 +4717,10 @@ /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/genwin.c -make[4]: Leaving directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' +[ 99%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o +/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c +[ 99%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); @@ -4665,11 +4740,6 @@ | | | | long int size_t {aka unsigned int} | %d -[ 98%] Built target plast -[ 99%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -/usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-2.3.2+dfsg/src/seg/impl/seg.c -[ 99%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -fdebug-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", @@ -4741,7 +4811,7 @@ I: Nothing to do for arch:indep binary make[1]: Leaving directory '/build/plast-2.3.2+dfsg' dh_auto_install -O--buildsystem=cmake -Nplast-example - cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j15 install DESTDIR=/build/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/plast-2.3.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4752,264 +4822,264 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/tools --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/tools +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp +-- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp --- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp @@ -5062,12 +5132,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/31209/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/31209/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10488 and its subdirectories -I: Current time: Wed Aug 11 23:06:03 -12 2021 -I: pbuilder-time-stamp: 1628766363 +I: removing directory /srv/workspace/pbuilder/31209 and its subdirectories +I: Current time: Thu Sep 15 07:32:29 +14 2022 +I: pbuilder-time-stamp: 1663176749