Diff of the two buildlogs: -- --- b1/build.log 2021-06-19 17:10:15.143939748 +0000 +++ b2/build.log 2021-06-19 17:20:39.264499819 +0000 @@ -1,6 +1,8 @@ -I: pbuilder: network access will be disabled during build -I: Current time: Fri Jul 22 11:31:03 -12 2022 -I: pbuilder-time-stamp: 1658532663 +unshare: unshare failed: Cannot allocate memory +W: pbuilder: unshare CLONE_NEWNET not available +I: pbuilder: network access is available during build! +I: Current time: Sun Jun 20 07:10:18 +14 2021 +I: pbuilder-time-stamp: 1624122618 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +19,8 @@ I: copying [./python-csb_1.2.5+dfsg-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.1RjVGpWH/trustedkeys.kbx': General error -gpgv: Signature made Thu Oct 3 00:07:20 2019 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.bE9UC2y5/trustedkeys.kbx': General error +gpgv: Signature made Fri Oct 4 02:07:20 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,137 +34,171 @@ dpkg-source: info: applying fix_setup.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4062/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/27668/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/27668/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/27668/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='1122c1b9680640da87994542f56ab599' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4062' - PS1='# ' - PS2='> ' + INVOCATION_ID=92f2815cf3684f48a64cf4819a3ec122 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=27668 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.j6DfRbqxtM/pbuilderrc_HrnC --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.j6DfRbqxtM/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-5.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.j6DfRbqxtM/pbuilderrc_Lj2H --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.j6DfRbqxtM/b2 --logfile b2/build.log --extrapackages usrmerge python-csb_1.2.5+dfsg-5.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin - total 5776 - -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 2021 more - -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount - -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 21 03:46 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/4062/tmp/hooks/D02_print_environment finished + total 5780 + -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more + -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 20 07:14 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 18 23:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/27668/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -297,7 +333,7 @@ Get: 85 http://deb.debian.org/debian bullseye/main i386 python3-matplotlib i386 3.3.4-1 [4165 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 python3-scipy i386 1.6.0-2 [11.9 MB] Get: 87 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-3 [441 kB] -Fetched 55.9 MB in 1s (92.5 MB/s) +Fetched 55.9 MB in 20s (2744 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -668,9 +704,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (404 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25715 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -716,145 +784,145 @@ creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric -copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core -copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core +copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio -copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio +copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core +copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core -copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core +copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io -copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io +copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core +copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm +copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments +copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io +copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm -copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments -copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment +copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs -copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb +copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb -copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif -copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs +copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment -copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif +copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers +copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers -copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -938,12 +1006,8 @@ /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w - "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence \s """ -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? - self.assertFalse(self.enum.C is 66) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence \s input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence \d @@ -974,69 +1038,15 @@ re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpz7sp24n1' mode='r' encoding='UTF-8'> - content = open(self.temp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwp57245g' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjc5wzjl5' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'A/B/C/') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps40b52p1' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_tyut8z6' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnzzpnq3b' mode='r' encoding='UTF-8'> - self.assertEqual(data, open(temp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? + self.assertFalse(self.enum.C is 66) +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w + "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] +testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok +testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok +testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' @@ -1055,268 +1065,11 @@ testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok -testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok -testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok -testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. - self.assertNotEquals(id(obj), id(copy)) -ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok -testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok -testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - data_blocks = open(os.path.expanduser( -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok -testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok -testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok -testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok -testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok -testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok -testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbe774nsz' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnccetrnb' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsbokaoc0' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8whmwps4' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp28i50ttn' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj02q9iy4' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok -testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok -testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok -testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok -testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok -testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok -testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok -testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl5a84c9r' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy5rp9gnd' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok -testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> - self.data = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok -testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok -testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok -testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead - array = numpy.fromstring(map_data, numpy.float32, count) -ok -testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok -testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok -testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok -testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok -testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok -testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) -@see: [CSB 0000067] ... ok -testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok -testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) -Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok -testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok -testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok -testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok -testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok -testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok -testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok -testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) -Strictly speaking, this is a regression test. But it so essential that ... ok -testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok -testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok -testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok -testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok -testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) -@see: [CSB 0000031] ... ok -testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) -@see: [CSB 0000052] ... ok -testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok -testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok -testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) -@see: [CSB 0000045] ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok -testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok -testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok -testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok -testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok -testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok -testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) -@see: [CSB 0000056] ... ok -testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa77m5dhr' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok -testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok -testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) -@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7qr73mah' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok +testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok +testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback @@ -1347,10 +1100,10 @@ testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9spz13pg' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp52kyiw1r' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_5cjpvk_' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk20tcri8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1366,10 +1119,10 @@ testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxlqhclcw' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4eb2k17q' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq07rri6b' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph6u93a7t' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1385,10 +1138,10 @@ testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvo9xghsv' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk1irh0dy' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi8lohkup' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq46a162p' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1415,10 +1168,10 @@ testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpu1yyovbb' mode='r' encoding='UTF-8'> +testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpek7l20kl' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphss1wri_' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2k9kpmgz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1443,6 +1196,42 @@ testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok +testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok +testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000122] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) @@ -1530,16 +1319,92 @@ testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2urgt0wp' mode='r' encoding='UTF-8'> +testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5kvu63w3' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpz0crh4rv' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp462nodby' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok +testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok +testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok +testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok +testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok +testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok +testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0owrqb3o' mode='r' encoding='UTF-8'> + new = open(tmp.name).read().rstrip() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> + for line in open(file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok +testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok +testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok +testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok +testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok +testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok +testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok +testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok +testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok +testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok +testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok +testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok +testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok @@ -1594,6 +1459,219 @@ testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok +testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok +testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + data_blocks = open(os.path.expanduser( +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxpk7y6gs' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuw2xzorr' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzqlq5z3b' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppoxdqrxs' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpne3zkp9b' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe94tlgo3' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok +testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok +testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok +testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok +testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok +testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok +testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok +testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptmn2_lvn' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0k2n429o' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok +testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> + self.data = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok +testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok +testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) +@see: [CSB 0000067] ... ok +testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok +testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) +Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok +testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok +testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok +testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok +testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok +testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok +testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok +testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) +Strictly speaking, this is a regression test. But it so essential that ... ok +testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok +testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok +testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok +testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok +testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) +@see: [CSB 0000031] ... ok +testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) +@see: [CSB 0000052] ... ok +testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok +testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok +testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) +@see: [CSB 0000045] ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok +testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok +testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok +testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok +testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok +testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok +testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok +testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead + array = numpy.fromstring(map_data, numpy.float32, count) +ok +testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok +testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok +testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok +testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok +testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok +testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok +testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok +testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok +testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok +testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok +testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok +testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) +@see: [CSB 0000056] ... ok +testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_le7a2xa' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok +testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok +testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) +@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp127i760l' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) @see: [CSB 0000058] ... ok @@ -1616,118 +1694,20 @@ testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok -testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok -testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok -testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok -testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok -testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok -testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok -testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj38cqv19' mode='r' encoding='UTF-8'> - new = open(tmp.name).read().rstrip() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> - for line in open(file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok -testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok -testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok -testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok -testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok -testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok -testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok +testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok +testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' +testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok +testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok +testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok +testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok +testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) @@ -1740,20 +1720,47 @@ The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok -testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok -testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok -testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok -testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok -testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok -testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok -testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' +testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok +testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok +testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok +testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok +testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok +testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not positive-semidefinite. + initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not positive-semidefinite. + momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), +ok +testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok +testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok +testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' +testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok +testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok +testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok +testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' +testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok +testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok +testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok +testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok +testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok +testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok +testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok +testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok +testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok +testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok +testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok +testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok +testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. + ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 +ok +testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok +testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok +testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok @@ -1811,50 +1818,111 @@ testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok -testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok -testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok -testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok -testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok -testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok -testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not positive-semidefinite. - initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not positive-semidefinite. - momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. + self.assertNotEquals(id(obj), id(copy)) ok -testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok -testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok -testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' -testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok -testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok -testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok -testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' -testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok -testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok -testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok -testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok -testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok -testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok -testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok -testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok -testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok -testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok -testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok -testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok -testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. - ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbpkcgbjt' mode='r' encoding='UTF-8'> + content = open(self.temp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok -testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok -testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok +testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_q9tlqlw' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcc96a6z8' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'A/B/C/') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcz95656s' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe4krcdpv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptc62fpo5' mode='r' encoding='UTF-8'> + self.assertEqual(data, open(temp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok ---------------------------------------------------------------------- -Ran 697 tests in 90.701s +Ran 697 tests in 194.537s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' @@ -1887,411 +1955,411 @@ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9 creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/integrators.py to integrators.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc -/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc +/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/build.py to build.cpython-39.pyc -/usr/lib/python3.9/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? -/usr/lib/python3.9/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? -/usr/lib/python3.9/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/build.py to build.cpython-39.pyc +/usr/lib/python3.9/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? +/usr/lib/python3.9/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? +/usr/lib/python3.9/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -2328,20 +2396,21 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-5_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-5_all.deb'. +dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-5_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-csb_1.2.5+dfsg-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -I: copying local configuration +I: user script /srv/workspace/pbuilder/27668/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/27668/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4062 and its subdirectories -I: Current time: Fri Jul 22 11:33:13 -12 2022 -I: pbuilder-time-stamp: 1658532793 +I: removing directory /srv/workspace/pbuilder/27668 and its subdirectories +I: Current time: Sun Jun 20 07:20:38 +14 2021 +I: pbuilder-time-stamp: 1624123238