Diff of the two buildlogs:
--
--- b1/build.log 2021-04-07 07:30:04.642133550 +0000
+++ b2/build.log 2021-04-07 07:34:18.600277563 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Tue Apr 6 19:24:44 -12 2021
-I: pbuilder-time-stamp: 1617780284
+I: Current time: Wed May 11 03:53:10 +14 2022
+I: pbuilder-time-stamp: 1652190790
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
@@ -17,7 +17,7 @@
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Fri Jan 18 07:48:29 2019 -12
+gpgv: Signature made Sat Jan 19 09:48:29 2019 +14
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./biojava4-live_4.2.12+dfsg-2.dsc
@@ -35,136 +35,170 @@
dpkg-source: info: applying ignore_fake_tests
I: using fakeroot in build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/48295/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/39423/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos5-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/39423/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/39423/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='amd64'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15'
- DISTRIBUTION=''
- HOME='/root'
- HOST_ARCH='amd64'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+ BASH_VERSION='5.0.3(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=amd64
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
+ DIRSTACK=()
+ DISTRIBUTION=
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=x86_64
+ HOST_ARCH=amd64
IFS='
'
- INVOCATION_ID='7b6ff1c9f2fd4bc4abc9b6ef742e550c'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='48295'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=8a3ae4a5a9054b9499b196735e172305
+ LANG=C
+ LANGUAGE=et_EE:et
+ LC_ALL=C
+ MACHTYPE=x86_64-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=39423
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.k2fs6N0dHF/pbuilderrc_sF3Y --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.k2fs6N0dHF/b1 --logfile b1/build.log biojava4-live_4.2.12+dfsg-2.dsc'
- SUDO_GID='111'
- SUDO_UID='106'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://78.137.99.97:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.k2fs6N0dHF/pbuilderrc_rLD6 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.k2fs6N0dHF/b2 --logfile b2/build.log biojava4-live_4.2.12+dfsg-2.dsc'
+ SUDO_GID=110
+ SUDO_UID=105
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://85.184.249.68:3128
I: uname -a
- Linux ionos11-amd64 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 5.10.0-0.bpo.4-amd64 #1 SMP Debian 5.10.19-1~bpo10+1 (2021-03-13) x86_64 GNU/Linux
I: ls -l /bin
total 5116
- -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash
- -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2
- -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat
- lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff
- lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe
- lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep
- -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2
- -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover
- lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore
- -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat
- -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp
- -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod
- -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown
- -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp
- -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash
- -rwxr-xr-x 1 root root 109408 Feb 28 2019 date
- -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd
- -rwxr-xr-x 1 root root 93744 Feb 28 2019 df
- -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir
- -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg
- lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname
- -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo
- -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep
- -rwxr-xr-x 1 root root 35424 Feb 28 2019 false
- -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep
- -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt
- -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount
- -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep
- -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip
- -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe
- -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip
- -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname
- -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln
- -rwxr-xr-x 1 root root 56760 Jul 26 2018 login
- -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls
- -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk
- -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir
- -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod
- -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp
- -rwxr-xr-x 1 root root 43008 Jan 9 2019 more
- -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount
- -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint
- -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv
- lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd
- lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash
- -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink
- -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm
- -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir
- -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts
- -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed
- lrwxrwxrwx 1 root root 4 Mar 20 20:25 sh -> dash
- -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep
- -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty
- -rwsr-xr-x 1 root root 63568 Jan 9 2019 su
- -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync
- -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar
- -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile
- -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch
- -rwxr-xr-x 1 root root 35424 Feb 28 2019 true
- -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server
- -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount
- -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname
- -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress
- -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir
- -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl
- -rwxr-xr-x 1 root root 946 Jan 21 2019 which
- lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat
- -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp
- -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff
- -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep
- -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep
- -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce
- -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep
- -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless
- -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore
- -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew
-I: user script /srv/workspace/pbuilder/48295/tmp/hooks/D02_print_environment finished
+ -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash
+ -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2
+ -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat
+ lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff
+ lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe
+ lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep
+ -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2
+ -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover
+ lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore
+ -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat
+ -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp
+ -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod
+ -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown
+ -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp
+ -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash
+ -rwxr-xr-x 1 root root 109408 Mar 1 2019 date
+ -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd
+ -rwxr-xr-x 1 root root 93744 Mar 1 2019 df
+ -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir
+ -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg
+ lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname
+ -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo
+ -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep
+ -rwxr-xr-x 1 root root 35424 Mar 1 2019 false
+ -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep
+ -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt
+ -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount
+ -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep
+ -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip
+ -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe
+ -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip
+ -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname
+ -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln
+ -rwxr-xr-x 1 root root 56760 Jul 27 2018 login
+ -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls
+ -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk
+ -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir
+ -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod
+ -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp
+ -rwxr-xr-x 1 root root 43008 Jan 10 2019 more
+ -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount
+ -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint
+ -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv
+ lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd
+ lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash
+ -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink
+ -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm
+ -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir
+ -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts
+ -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed
+ lrwxrwxrwx 1 root root 4 May 11 03:53 sh -> bash
+ lrwxrwxrwx 1 root root 4 Apr 24 04:46 sh.distrib -> dash
+ -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep
+ -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty
+ -rwsr-xr-x 1 root root 63568 Jan 10 2019 su
+ -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync
+ -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar
+ -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile
+ -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch
+ -rwxr-xr-x 1 root root 35424 Mar 1 2019 true
+ -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server
+ -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount
+ -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname
+ -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress
+ -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir
+ -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl
+ -rwxr-xr-x 1 root root 946 Jan 22 2019 which
+ lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat
+ -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp
+ -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff
+ -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep
+ -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep
+ -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce
+ -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep
+ -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless
+ -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore
+ -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew
+I: user script /srv/workspace/pbuilder/39423/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -501,7 +535,7 @@
Get: 241 http://deb.debian.org/debian buster/main amd64 libvecmath-java all 1.5.2-7 [97.0 kB]
Get: 242 http://deb.debian.org/debian buster/main amd64 libxmlunit-java all 1.6-1 [95.5 kB]
Get: 243 http://deb.debian.org/debian buster/main amd64 rdfind amd64 1.4.1-1 [40.4 kB]
-Fetched 362 MB in 7s (48.6 MB/s)
+Fetched 362 MB in 16s (23.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19195 files and directories currently installed.)
@@ -1683,7 +1717,7 @@
fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/biojava4-live-4.2.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
+I: Running cd /build/biojava4-live-4.2.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package biojava4-live
dpkg-buildpackage: info: source version 4.2.12+dfsg-2
dpkg-buildpackage: info: source distribution unstable
@@ -1749,7 +1783,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-jcolorbrewer.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-forester && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-forester/build.xml
@@ -1765,7 +1799,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-forester.jar
BUILD SUCCESSFUL
-Total time: 15 seconds
+Total time: 11 seconds
cd biojava-core && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-core/build.xml
@@ -1783,7 +1817,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-core.jar
BUILD SUCCESSFUL
-Total time: 6 seconds
+Total time: 5 seconds
cd biojava-phylo && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-phylo/build.xml
@@ -1797,7 +1831,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-phylo.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-alignment && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-alignment/build.xml
@@ -1813,7 +1847,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-alignment.jar
BUILD SUCCESSFUL
-Total time: 4 seconds
+Total time: 3 seconds
cd biojava-aa-prop && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/build.xml
@@ -1831,7 +1865,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-aa-prop.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-genome && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-genome/build.xml
@@ -1847,7 +1881,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-genome.jar
BUILD SUCCESSFUL
-Total time: 4 seconds
+Total time: 3 seconds
cd biojava-sequencing && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-sequencing/build.xml
@@ -1862,7 +1896,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-sequencing.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-structure && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-structure/build.xml
@@ -1880,7 +1914,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-structure.jar
BUILD SUCCESSFUL
-Total time: 13 seconds
+Total time: 9 seconds
cd biojava-structure-gui && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-structure-gui/build.xml
@@ -1898,7 +1932,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-structure-gui.jar
BUILD SUCCESSFUL
-Total time: 6 seconds
+Total time: 5 seconds
cd biojava-modfinder && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-modfinder/build.xml
@@ -1914,7 +1948,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-modfinder.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-ontology && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-ontology/build.xml
@@ -1932,7 +1966,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-ontology.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-protein-disorder && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-protein-disorder/build.xml
@@ -1948,7 +1982,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-protein-disorder.jar
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
cd biojava-protein-comparison-tool && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-protein-comparison-tool/build.xml
@@ -1962,7 +1996,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-protein-comparison-tool.jar
BUILD SUCCESSFUL
-Total time: 2 seconds
+Total time: 1 second
cd biojava-ws && ant jar
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-ws/build.xml
@@ -1992,7 +2026,7 @@
[jar] Building jar: /build/biojava4-live-4.2.12+dfsg/dist/biojava4-survival.jar
BUILD SUCCESSFUL
-Total time: 4 seconds
+Total time: 3 seconds
# make doc
rm -rf biojavadoc
mkdir biojavadoc
@@ -2284,7 +2318,7 @@
[javadoc] 100 warnings
BUILD SUCCESSFUL
-Total time: 27 seconds
+Total time: 20 seconds
# rm -rf biojavadoc
make[1]: Leaving directory '/build/biojava4-live-4.2.12+dfsg'
debian/rules override_dh_auto_test
@@ -2317,169 +2351,169 @@
[echo] Using java version 11.0.9.1
[junit] Running org.biojava.nbio.core.alignment.SimpleAlignedSequenceTest
[junit] Testsuite: org.biojava.nbio.core.alignment.SimpleAlignedSequenceTest
- [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.126 sec
- [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.126 sec
+ [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.101 sec
+ [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.101 sec
[junit]
- [junit] Testcase: testGetIndexOf took 0.043 sec
- [junit] Testcase: testGetSequenceIndexAtOutOfBounds took 0 sec
+ [junit] Testcase: testGetIndexOf took 0.033 sec
+ [junit] Testcase: testGetSequenceIndexAtOutOfBounds took 0.001 sec
[junit] Testcase: testGetSequenceIndexAtOutOfBounds2 took 0 sec
[junit] Testcase: testGetSequenceIndexAtOutOfBounds3 took 0 sec
- [junit] Testcase: testGetSequenceIndexAtOutOfBounds4 took 0.001 sec
+ [junit] Testcase: testGetSequenceIndexAtOutOfBounds4 took 0 sec
[junit] Testcase: testGetNumGaps took 0.001 sec
[junit] Testcase: testGetStart took 0 sec
[junit] Testcase: testGetSequenceIndexAt took 0.001 sec
[junit] Testcase: testGetAccession took 0.001 sec
- [junit] Testcase: testToString took 0.004 sec
- [junit] Testcase: testSimpleAlignedSequenceLong took 0 sec
+ [junit] Testcase: testToString took 0.002 sec
+ [junit] Testcase: testSimpleAlignedSequenceLong took 0.001 sec
[junit] Testcase: testCountCompounds took 0.001 sec
- [junit] Testcase: testGetAlignmentIndexAt took 0 sec
+ [junit] Testcase: testGetAlignmentIndexAt took 0.001 sec
[junit] Testcase: testGetAlignmentIndexAtOutOfBounds took 0 sec
- [junit] Testcase: testGetAlignmentIndexAtOutOfBounds2 took 0.001 sec
+ [junit] Testcase: testGetAlignmentIndexAtOutOfBounds2 took 0 sec
[junit] Testcase: testGetAlignmentIndexAtOutOfBounds3 took 0.002 sec
[junit] Testcase: testGetAlignmentIndexAtOutOfBounds4 took 0.001 sec
[junit] Testcase: testGetSubSequence took 0 sec
[junit] SKIPPED
- [junit] Testcase: testGetAsList took 0.004 sec
+ [junit] Testcase: testGetAsList took 0.002 sec
[junit] Testcase: testGetOriginalSequence took 0 sec
[junit] Testcase: testGetCompoundAt took 0 sec
- [junit] Testcase: testGetLength took 0.001 sec
+ [junit] Testcase: testGetLength took 0 sec
[junit] Testcase: testIsCircular took 0 sec
- [junit] Testcase: testGetEnd took 0.001 sec
+ [junit] Testcase: testGetEnd took 0 sec
[junit] Testcase: testSimpleAlignedSequenceLocal took 0 sec
- [junit] Testcase: testSimpleAlignedSequenceShort took 0 sec
+ [junit] Testcase: testSimpleAlignedSequenceShort took 0.001 sec
[junit] Testcase: testGetOverlapCount took 0 sec
- [junit] Testcase: testGetCompoundSet took 0 sec
- [junit] Testcase: testGetLocationInAlignment took 0.002 sec
- [junit] Testcase: testIterator took 0 sec
+ [junit] Testcase: testGetCompoundSet took 0.001 sec
+ [junit] Testcase: testGetLocationInAlignment took 0.001 sec
+ [junit] Testcase: testIterator took 0.001 sec
[junit] Testcase: testGetSequenceAsString took 0.001 sec
[junit] Testcase: testGetLastIndexOf took 0 sec
- [junit] Testcase: testGetSequenceAsStringIntegerIntegerStrand took 0.002 sec
+ [junit] Testcase: testGetSequenceAsStringIntegerIntegerStrand took 0.001 sec
[junit] Running org.biojava.nbio.core.alignment.SimpleProfileTest
[junit] Testsuite: org.biojava.nbio.core.alignment.SimpleProfileTest
- [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.225 sec
- [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.225 sec
+ [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.159 sec
+ [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.159 sec
[junit]
- [junit] Testcase: testGetIndexOf took 0.083 sec
+ [junit] Testcase: testGetIndexOf took 0.054 sec
[junit] Testcase: testGetCompoundAtSIntOutOfBounds took 0.001 sec
- [junit] Testcase: testGetAlignedSequenceInt took 0.002 sec
- [junit] Testcase: testToStringInt took 0.012 sec
+ [junit] Testcase: testGetAlignedSequenceInt took 0.001 sec
+ [junit] Testcase: testToStringInt took 0.01 sec
[junit] Testcase: testToString took 0.001 sec
- [junit] Testcase: testToStringFormatted took 0.031 sec
+ [junit] Testcase: testToStringFormatted took 0.02 sec
[junit] Testcase: testSimpleProfile took 0 sec
- [junit] Testcase: testGetSize took 0 sec
- [junit] Testcase: testGetAlignedSequenceS took 0.001 sec
- [junit] Testcase: testGetAlignedSequences took 0.001 sec
- [junit] Testcase: testGetOriginalSequences took 0 sec
+ [junit] Testcase: testGetSize took 0.001 sec
+ [junit] Testcase: testGetAlignedSequenceS took 0 sec
+ [junit] Testcase: testGetAlignedSequences took 0 sec
+ [junit] Testcase: testGetOriginalSequences took 0.001 sec
[junit] Testcase: testGetSubProfile took 0 sec
[junit] SKIPPED
[junit] Testcase: testGetCompoundAtSInt took 0 sec
- [junit] Testcase: testGetAlignedSequencesSArray took 0 sec
+ [junit] Testcase: testGetAlignedSequencesSArray took 0.001 sec
[junit] Testcase: testGetIndicesAt took 0.002 sec
- [junit] Testcase: testGetAlignedSequenceIntOutOfBounds took 0.001 sec
- [junit] Testcase: testGetAlignedSequencesIntArray took 0.002 sec
- [junit] Testcase: testGetCompoundAtIntInt took 0.001 sec
- [junit] Testcase: testGetCompoundAtIntIntOutOfBounds took 0.001 sec
+ [junit] Testcase: testGetAlignedSequenceIntOutOfBounds took 0 sec
+ [junit] Testcase: testGetAlignedSequencesIntArray took 0.001 sec
+ [junit] Testcase: testGetCompoundAtIntInt took 0 sec
+ [junit] Testcase: testGetCompoundAtIntIntOutOfBounds took 0 sec
[junit] Testcase: testGetLength took 0 sec
- [junit] Testcase: testGetCompoundsAtOutOfBounds took 0.001 sec
+ [junit] Testcase: testGetCompoundsAtOutOfBounds took 0.002 sec
[junit] Testcase: testIsCircular took 0 sec
- [junit] Testcase: testGetCompoundsAtOutOfBounds2 took 0 sec
+ [junit] Testcase: testGetCompoundsAtOutOfBounds2 took 0.001 sec
[junit] Testcase: testGetCompoundsAtOutOfBounds3 took 0 sec
[junit] Testcase: testGetCompoundsAtOutOfBounds4 took 0.001 sec
[junit] Testcase: testGetCompoundsAtOutOfBounds5 took 0 sec
- [junit] Testcase: testGetCompoundsAtOutOfBounds6 took 0 sec
- [junit] Testcase: testGetIndicesAtOutOfBounds2 took 0.001 sec
+ [junit] Testcase: testGetCompoundsAtOutOfBounds6 took 0.001 sec
+ [junit] Testcase: testGetIndicesAtOutOfBounds2 took 0 sec
[junit] Testcase: testGetIndicesAtOutOfBounds3 took 0.001 sec
[junit] Testcase: testGetIndicesAtOutOfBounds4 took 0 sec
- [junit] Testcase: testGetIndicesAtOutOfBounds5 took 0 sec
- [junit] Testcase: testGetIndicesAtOutOfBounds6 took 0.001 sec
+ [junit] Testcase: testGetIndicesAtOutOfBounds5 took 0.001 sec
+ [junit] Testcase: testGetIndicesAtOutOfBounds6 took 0 sec
[junit] Testcase: testGetAlignedSequenceIntOutOfBounds2 took 0.001 sec
[junit] Testcase: testGetAlignedSequenceIntOutOfBounds3 took 0 sec
- [junit] Testcase: testGetAlignedSequenceIntOutOfBounds4 took 0 sec
+ [junit] Testcase: testGetAlignedSequenceIntOutOfBounds4 took 0.001 sec
[junit] Testcase: testGetAlignedSequenceIntOutOfBounds5 took 0 sec
- [junit] Testcase: testGetAlignedSequenceIntOutOfBounds6 took 0.001 sec
- [junit] Testcase: testGetCompoundSet took 0.001 sec
+ [junit] Testcase: testGetAlignedSequenceIntOutOfBounds6 took 0 sec
+ [junit] Testcase: testGetCompoundSet took 0 sec
[junit] Testcase: testGetCompoundsAt took 0 sec
- [junit] Testcase: testGetCompoundAtSIntOutOfBounds2 took 0 sec
- [junit] Testcase: testGetCompoundAtSIntOutOfBounds3 took 0.001 sec
+ [junit] Testcase: testGetCompoundAtSIntOutOfBounds2 took 0.001 sec
+ [junit] Testcase: testGetCompoundAtSIntOutOfBounds3 took 0 sec
[junit] Testcase: testGetCompoundAtSIntOutOfBounds4 took 0 sec
[junit] Testcase: testGetCompoundAtSIntOutOfBounds5 took 0 sec
- [junit] Testcase: testIterator took 0.001 sec
- [junit] Testcase: testGetLastIndexOf took 0.001 sec
- [junit] Testcase: testGetCompoundAtIntIntOutOfBounds2 took 0.001 sec
- [junit] Testcase: testGetCompoundAtIntIntOutOfBounds3 took 0 sec
+ [junit] Testcase: testIterator took 0 sec
+ [junit] Testcase: testGetLastIndexOf took 0 sec
+ [junit] Testcase: testGetCompoundAtIntIntOutOfBounds2 took 0 sec
+ [junit] Testcase: testGetCompoundAtIntIntOutOfBounds3 took 0.001 sec
[junit] Testcase: testGetCompoundAtIntIntOutOfBounds4 took 0 sec
[junit] Testcase: testGetCompoundAtIntIntOutOfBounds5 took 0.001 sec
[junit] Testcase: testGetCompoundAtIntIntOutOfBounds6 took 0 sec
- [junit] Testcase: testGetCompoundAtIntIntOutOfBounds7 took 0 sec
- [junit] Testcase: testGetCompoundAtIntIntOutOfBounds8 took 0.001 sec
+ [junit] Testcase: testGetCompoundAtIntIntOutOfBounds7 took 0.001 sec
+ [junit] Testcase: testGetCompoundAtIntIntOutOfBounds8 took 0 sec
[junit] Testcase: testGetCompoundAtIntIntOutOfBounds9 took 0 sec
- [junit] Testcase: testGetIndicesAtOutOfBounds took 0.001 sec
+ [junit] Testcase: testGetIndicesAtOutOfBounds took 0 sec
[junit] Running org.biojava.nbio.core.alignment.SimpleSequencePairTest
[junit] Testsuite: org.biojava.nbio.core.alignment.SimpleSequencePairTest
- [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.162 sec
- [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.162 sec
+ [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.114 sec
+ [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.114 sec
[junit]
- [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds took 0.082 sec
+ [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds took 0.053 sec
[junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds2 took 0.001 sec
- [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds3 took 0.001 sec
+ [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds3 took 0 sec
[junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds4 took 0 sec
- [junit] Testcase: testGetQuery took 0 sec
- [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds took 0.001 sec
- [junit] Testcase: testGetIndexInTargetAt took 0.001 sec
- [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds2 took 0 sec
- [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds3 took 0 sec
+ [junit] Testcase: testGetQuery took 0.001 sec
+ [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds took 0 sec
+ [junit] Testcase: testGetIndexInTargetAt took 0 sec
+ [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds2 took 0.001 sec
+ [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds3 took 0.001 sec
[junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds4 took 0.001 sec
- [junit] Testcase: testGetCompoundInQueryAtOutOfBounds took 0.001 sec
- [junit] Testcase: testGetIndexInQueryAtOutOfBounds took 0.001 sec
- [junit] Testcase: testGetCompoundInQueryAt took 0 sec
+ [junit] Testcase: testGetCompoundInQueryAtOutOfBounds took 0 sec
+ [junit] Testcase: testGetIndexInQueryAtOutOfBounds took 0 sec
+ [junit] Testcase: testGetCompoundInQueryAt took 0.001 sec
[junit] Testcase: testGetIndexInQueryAtOutOfBounds2 took 0 sec
- [junit] Testcase: testGetIndexInQueryAtOutOfBounds3 took 0.001 sec
+ [junit] Testcase: testGetIndexInQueryAtOutOfBounds3 took 0 sec
[junit] Testcase: testGetIndexInQueryAtOutOfBounds4 took 0.002 sec
[junit] Testcase: testGetIndexInQueryForTargetAt took 0.001 sec
[junit] Testcase: testGetIndexInTargetAtOutOfBounds took 0 sec
[junit] Testcase: testGetNumIdenticals took 0 sec
- [junit] Testcase: testGetIndexInTargetForQueryAt took 0 sec
- [junit] Testcase: testGetIndexInTargetAtOutOfBounds2 took 0.001 sec
+ [junit] Testcase: testGetIndexInTargetForQueryAt took 0.001 sec
+ [junit] Testcase: testGetIndexInTargetAtOutOfBounds2 took 0 sec
[junit] Testcase: testGetIndexInTargetAtOutOfBounds3 took 0 sec
- [junit] Testcase: testGetIndexInTargetAtOutOfBounds4 took 0 sec
+ [junit] Testcase: testGetIndexInTargetAtOutOfBounds4 took 0.001 sec
[junit] Testcase: testGetCompoundInTargetAt took 0 sec
- [junit] Testcase: testGetIndexInQueryAt took 0.001 sec
- [junit] Testcase: testGetCompoundInQueryAtOutOfBounds2 took 0 sec
+ [junit] Testcase: testGetIndexInQueryAt took 0 sec
+ [junit] Testcase: testGetCompoundInQueryAtOutOfBounds2 took 0.001 sec
[junit] Testcase: testGetCompoundInQueryAtOutOfBounds3 took 0 sec
- [junit] Testcase: testGetCompoundInQueryAtOutOfBounds4 took 0.001 sec
+ [junit] Testcase: testGetCompoundInQueryAtOutOfBounds4 took 0 sec
[junit] Testcase: testGetTarget took 0 sec
- [junit] Testcase: testGetCompoundInTargetAtOutOfBounds took 0.001 sec
+ [junit] Testcase: testGetCompoundInTargetAtOutOfBounds took 0 sec
[junit] Testcase: testGetNumSimilars took 0.002 sec
[junit] Testcase: testGetCompoundInTargetAtOutOfBounds2 took 0 sec
[junit] Testcase: testGetCompoundInTargetAtOutOfBounds3 took 0 sec
- [junit] Testcase: testGetCompoundInTargetAtOutOfBounds4 took 0.001 sec
+ [junit] Testcase: testGetCompoundInTargetAtOutOfBounds4 took 0 sec
[junit] Running org.biojava.nbio.core.search.io.HspTest
[junit] Testsuite: org.biojava.nbio.core.search.io.HspTest
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.146 sec
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.146 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 sec
[junit] ------------- Standard Output ---------------
[junit] getAlignment
[junit] hashCode
[junit] equals
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testGetAlignment took 0.08 sec
- [junit] Testcase: testHashCode took 0.001 sec
+ [junit] Testcase: testGetAlignment took 0.055 sec
+ [junit] Testcase: testHashCode took 0 sec
[junit] Testcase: testEquals took 0 sec
[junit] Running org.biojava.nbio.core.search.io.SearchIOTest
[junit] Testsuite: org.biojava.nbio.core.search.io.SearchIOTest
- [junit] Tests run: 3, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.413 sec
- [junit] Tests run: 3, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.413 sec
+ [junit] Tests run: 3, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.313 sec
+ [junit] Tests run: 3, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.313 sec
[junit] ------------- Standard Error -----------------
[junit] [main] INFO org.biojava.nbio.core.search.io.Hsp - Start reading /build/biojava4-live-4.2.12+dfsg/buildtest/biojava4-core/classes/org/biojava/nbio/core/search/io/blast/testBlastReport.blastxml
- [junit] Apr 06, 2021 7:28:30 PM org.biojava.nbio.core.search.io.blast.BlastTabularParser createObjects
+ [junit] May 11, 2022 3:56:07 AM org.biojava.nbio.core.search.io.blast.BlastTabularParser createObjects
[junit] INFO: Query for hits
- [junit] Apr 06, 2021 7:28:30 PM org.biojava.nbio.core.search.io.blast.BlastTabularParser createObjects
+ [junit] May 11, 2022 3:56:07 AM org.biojava.nbio.core.search.io.blast.BlastTabularParser createObjects
[junit] INFO: 135 hits approximately in all results
[junit] [main] INFO org.biojava.nbio.core.search.io.Hsp - Start reading /build/biojava4-live-4.2.12+dfsg/buildtest/biojava4-core/classes/org/biojava/nbio/core/search/io/blast/testBlastReport.blastxml
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testConstructorWithEvalueHspFilter took 0.219 sec
+ [junit] Testcase: testConstructorWithEvalueHspFilter took 0.165 sec
[junit] FAILED
[junit] test failed:
[junit] www.ncbi.nlm.nih.gov
@@ -2490,8 +2524,8 @@
[junit] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[junit] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit]
- [junit] Testcase: testConstructorWithFactoryGuess took 0.146 sec
- [junit] Testcase: testConstructorWithoutFactoryGuess took 0.006 sec
+ [junit] Testcase: testConstructorWithFactoryGuess took 0.108 sec
+ [junit] Testcase: testConstructorWithoutFactoryGuess took 0.005 sec
[junit] FAILED
[junit] test failed:
[junit] www.ncbi.nlm.nih.gov
@@ -2506,7 +2540,7 @@
BUILD FAILED
/build/biojava4-live-4.2.12+dfsg/biojava-core/build.xml:123: Test org.biojava.nbio.core.search.io.SearchIOTest failed
-Total time: 9 seconds
+Total time: 7 seconds
cd biojava-alignment && ant test
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-alignment/build.xml
@@ -2521,32 +2555,32 @@
[echo] Using java version 11.0.9.1
[junit] Running org.biojava.nbio.alignment.FractionalIdentityScorerTest
[junit] Testsuite: org.biojava.nbio.alignment.FractionalIdentityScorerTest
- [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.164 sec
- [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.164 sec
+ [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec
+ [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec
[junit]
- [junit] Testcase: testGetQuery took 0.086 sec
- [junit] Testcase: testGetScore took 0.038 sec
- [junit] Testcase: testFractionalIdentityScorerPairwiseSequenceAlignerOfSC took 0.001 sec
+ [junit] Testcase: testGetQuery took 0.048 sec
+ [junit] Testcase: testGetScore took 0.019 sec
+ [junit] Testcase: testFractionalIdentityScorerPairwiseSequenceAlignerOfSC took 0 sec
[junit] Testcase: testGetMinScore took 0.001 sec
[junit] Testcase: testFractionalIdentityScorerSequencePairOfSC took 0.001 sec
- [junit] Testcase: testGetTarget took 0.001 sec
+ [junit] Testcase: testGetTarget took 0 sec
[junit] Testcase: testGetMaxScore took 0.001 sec
[junit] Running org.biojava.nbio.alignment.FractionalSimilarityScorerTest
[junit] Testsuite: org.biojava.nbio.alignment.FractionalSimilarityScorerTest
- [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.185 sec
- [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.185 sec
+ [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.112 sec
+ [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.112 sec
[junit]
- [junit] Testcase: testGetQuery took 0.089 sec
- [junit] Testcase: testGetScore took 0.054 sec
- [junit] Testcase: testFractionalSimilarityScorerSequencePairOfSC took 0.002 sec
- [junit] Testcase: testGetMinScore took 0 sec
+ [junit] Testcase: testGetQuery took 0.052 sec
+ [junit] Testcase: testGetScore took 0.028 sec
+ [junit] Testcase: testFractionalSimilarityScorerSequencePairOfSC took 0.001 sec
+ [junit] Testcase: testGetMinScore took 0.001 sec
[junit] Testcase: testFractionalSimilarityScorerPairwiseSequenceAlignerOfSC took 0 sec
[junit] Testcase: testGetTarget took 0 sec
- [junit] Testcase: testGetMaxScore took 0.001 sec
+ [junit] Testcase: testGetMaxScore took 0.002 sec
[junit] Running org.biojava.nbio.alignment.GuideTreeTest
[junit] Testsuite: org.biojava.nbio.alignment.GuideTreeTest
- [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.466 sec
- [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.466 sec
+ [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.225 sec
+ [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.225 sec
[junit] ------------- Standard Error -----------------
[junit] [main] INFO org.biojava.nbio.phylo.TreeConstructor - Tree Completed
[junit] [main] INFO org.biojava.nbio.phylo.TreeConstructor - Tree Completed
@@ -2558,157 +2592,157 @@
[junit] [main] INFO org.biojava.nbio.phylo.TreeConstructor - Tree Completed
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testGuideTree took 0.212 sec
- [junit] Testcase: testToString took 0.005 sec
- [junit] Testcase: testGetScoreMatrix took 0.007 sec
- [junit] Testcase: testGetRoot took 0.168 sec
+ [junit] Testcase: testGuideTree took 0.112 sec
+ [junit] Testcase: testToString took 0.004 sec
+ [junit] Testcase: testGetScoreMatrix took 0.005 sec
+ [junit] Testcase: testGetRoot took 0.057 sec
[junit] Testcase: testGetSequences took 0.004 sec
- [junit] Testcase: testGetDistanceMatrix took 0.005 sec
- [junit] Testcase: testGetAllPairsScores took 0.003 sec
- [junit] Testcase: testIterator took 0.002 sec
+ [junit] Testcase: testGetDistanceMatrix took 0.003 sec
+ [junit] Testcase: testGetAllPairsScores took 0.007 sec
+ [junit] Testcase: testIterator took 0.003 sec
[junit] Running org.biojava.nbio.alignment.LocalAlignmentTest
[junit] Testsuite: org.biojava.nbio.alignment.LocalAlignmentTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.212 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.212 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.128 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.128 sec
[junit]
- [junit] Testcase: shouldAllowZeroLengthMatches took 0.174 sec
+ [junit] Testcase: shouldAllowZeroLengthMatches took 0.103 sec
[junit] Running org.biojava.nbio.alignment.NeedlemanWunschTest
[junit] Testsuite: org.biojava.nbio.alignment.NeedlemanWunschTest
- [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.64 sec
- [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.64 sec
+ [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.424 sec
+ [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.424 sec
[junit] ------------- Standard Output ---------------
[junit] CG--TATATATCGCGCGCGCGATATATATATCT-TCTCTAAAAAAA
[junit] GGTATATATATCGCGCGCACGAT-TATATATCTCTCTCTAAAAAAA
[junit]
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testGetSubstitutionMatrix took 0.093 sec
- [junit] Testcase: testGetGapPenalty took 0.001 sec
- [junit] Testcase: testGetComputationTime took 0.063 sec
- [junit] Testcase: should_align_middle_anchor took 0.049 sec
+ [junit] Testcase: testGetSubstitutionMatrix took 0.071 sec
+ [junit] Testcase: testGetGapPenalty took 0 sec
+ [junit] Testcase: testGetComputationTime took 0.024 sec
+ [junit] Testcase: should_align_middle_anchor took 0.025 sec
[junit] Testcase: testGetQuery took 0 sec
[junit] Testcase: testGetScore took 0.001 sec
[junit] Testcase: testNeedlemanWunsch took 0.001 sec
[junit] Testcase: should_align_all_anchored took 0.001 sec
[junit] Testcase: testGetScoreMatrix took 0.001 sec
[junit] Testcase: testGetPair took 0.002 sec
- [junit] Testcase: should_align_multiple_anchors took 0.002 sec
- [junit] Testcase: testAnchoredDNAAlignment took 0.006 sec
- [junit] Testcase: testGetProfile took 0.003 sec
- [junit] Testcase: testGetMinScore took 0.001 sec
- [junit] Testcase: should_align_ending_anchor took 0.001 sec
- [junit] Testcase: testIsStoringScoreMatrix took 0.002 sec
- [junit] Testcase: testComplex took 0.012 sec
- [junit] Testcase: testGetScoreMatrixAsString took 0.027 sec
+ [junit] Testcase: should_align_multiple_anchors took 0.001 sec
+ [junit] Testcase: testAnchoredDNAAlignment took 0.004 sec
+ [junit] Testcase: testGetProfile took 0.002 sec
+ [junit] Testcase: testGetMinScore took 0 sec
+ [junit] Testcase: should_align_ending_anchor took 0 sec
+ [junit] Testcase: testIsStoringScoreMatrix took 0.001 sec
+ [junit] Testcase: testComplex took 0.01 sec
+ [junit] Testcase: testGetScoreMatrixAsString took 0.019 sec
[junit] Testcase: should_align_starting_anchor took 0.001 sec
- [junit] Testcase: anchors_should_not_change_score took 0.001 sec
- [junit] Testcase: testGetTarget took 0.001 sec
- [junit] Testcase: testGetMaxScore took 0 sec
- [junit] Testcase: testIntOverflowBug took 0.278 sec
+ [junit] Testcase: anchors_should_not_change_score took 0 sec
+ [junit] Testcase: testGetTarget took 0 sec
+ [junit] Testcase: testGetMaxScore took 0.001 sec
+ [junit] Testcase: testIntOverflowBug took 0.216 sec
[junit] Running org.biojava.nbio.alignment.SimpleGapPenaltyTest
[junit] Testsuite: org.biojava.nbio.alignment.SimpleGapPenaltyTest
- [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.049 sec
- [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.049 sec
+ [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 sec
+ [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 sec
[junit]
[junit] Testcase: testOpenPenalty took 0.003 sec
[junit] Testcase: testType took 0 sec
- [junit] Testcase: testExtensionPenalty took 0 sec
+ [junit] Testcase: testExtensionPenalty took 0.001 sec
[junit] Testcase: testSimpleGapPenaltyShortShort took 0 sec
[junit] Testcase: testSimpleGapPenalty took 0 sec
[junit] Running org.biojava.nbio.alignment.SimpleProfilePairTest
[junit] Testsuite: org.biojava.nbio.alignment.SimpleProfilePairTest
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.19 sec
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.19 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.106 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.106 sec
[junit]
- [junit] Testcase: testGetQuery took 0.139 sec
+ [junit] Testcase: testGetQuery took 0.073 sec
[junit] Testcase: testGetTarget took 0.001 sec
[junit] Testcase: testSimpleProfilePair took 0.007 sec
[junit] Running org.biojava.nbio.alignment.SimpleProfileProfileAlignerTest
[junit] Testsuite: org.biojava.nbio.alignment.SimpleProfileProfileAlignerTest
- [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.284 sec
- [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.284 sec
+ [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.19 sec
+ [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.19 sec
[junit]
- [junit] Testcase: testGetSubstitutionMatrix took 0.141 sec
- [junit] Testcase: testGetGapPenalty took 0.006 sec
- [junit] Testcase: testGetComputationTime took 0.005 sec
- [junit] Testcase: testGetQuery took 0.005 sec
- [junit] Testcase: testGetScore took 0.004 sec
- [junit] Testcase: testGetScoreMatrix took 0.005 sec
- [junit] Testcase: testGetPair took 0.01 sec
- [junit] Testcase: testGetProfile took 0.005 sec
- [junit] Testcase: testGetMinScore took 0.003 sec
- [junit] Testcase: testIsStoringScoreMatrix took 0.002 sec
- [junit] Testcase: testGetScoreMatrixAsString took 0.043 sec
- [junit] Testcase: testSimpleProfileProfileAlignerProfileOfSCProfileOfSCGapPenaltySubstitutionMatrixOfC took 0.003 sec
+ [junit] Testcase: testGetSubstitutionMatrix took 0.095 sec
+ [junit] Testcase: testGetGapPenalty took 0.004 sec
+ [junit] Testcase: testGetComputationTime took 0.004 sec
+ [junit] Testcase: testGetQuery took 0.002 sec
+ [junit] Testcase: testGetScore took 0.002 sec
+ [junit] Testcase: testGetScoreMatrix took 0.003 sec
+ [junit] Testcase: testGetPair took 0.006 sec
+ [junit] Testcase: testGetProfile took 0.003 sec
+ [junit] Testcase: testGetMinScore took 0.001 sec
+ [junit] Testcase: testIsStoringScoreMatrix took 0.001 sec
+ [junit] Testcase: testGetScoreMatrixAsString took 0.028 sec
+ [junit] Testcase: testSimpleProfileProfileAlignerProfileOfSCProfileOfSCGapPenaltySubstitutionMatrixOfC took 0.002 sec
[junit] Testcase: testSimpleProfileProfileAligner took 0.002 sec
[junit] Testcase: testGetTarget took 0.001 sec
- [junit] Testcase: testGetMaxScore took 0.002 sec
+ [junit] Testcase: testGetMaxScore took 0.001 sec
[junit] Running org.biojava.nbio.alignment.SimpleSubstitutionMatrixTest
[junit] Testsuite: org.biojava.nbio.alignment.SimpleSubstitutionMatrixTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.217 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.217 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.112 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.112 sec
[junit]
- [junit] Testcase: testSimpleSubstitutionMatrixNotFound took 0.012 sec
- [junit] Testcase: testSetDescription took 0.036 sec
- [junit] Testcase: testToString took 0.053 sec
- [junit] Testcase: testCaseEquivalence took 0.002 sec
- [junit] Testcase: test took 0.019 sec
- [junit] Testcase: testSimpleSubstitutionMatrix took 0.019 sec
- [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCStringString took 0.004 sec
- [junit] Testcase: testSetName took 0.008 sec
- [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCShortShort took 0.004 sec
+ [junit] Testcase: testSimpleSubstitutionMatrixNotFound took 0.005 sec
+ [junit] Testcase: testSetDescription took 0.022 sec
+ [junit] Testcase: testToString took 0.03 sec
+ [junit] Testcase: testCaseEquivalence took 0.001 sec
+ [junit] Testcase: test took 0.007 sec
+ [junit] Testcase: testSimpleSubstitutionMatrix took 0.006 sec
+ [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCStringString took 0.003 sec
+ [junit] Testcase: testSetName took 0.005 sec
+ [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCShortShort took 0.003 sec
[junit] Running org.biojava.nbio.alignment.SmithWatermanTest
[junit] Testsuite: org.biojava.nbio.alignment.SmithWatermanTest
- [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.267 sec
- [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.267 sec
+ [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.157 sec
+ [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.157 sec
[junit]
- [junit] Testcase: testGetSubstitutionMatrix took 0.102 sec
- [junit] Testcase: testGetGapPenalty took 0.001 sec
- [junit] Testcase: testGetComputationTime took 0.036 sec
- [junit] Testcase: testGetQuery took 0.001 sec
- [junit] Testcase: testGetScore took 0.003 sec
- [junit] Testcase: testGetScoreMatrix took 0.002 sec
- [junit] Testcase: testGetPair took 0.008 sec
+ [junit] Testcase: testGetSubstitutionMatrix took 0.056 sec
+ [junit] Testcase: testGetGapPenalty took 0 sec
+ [junit] Testcase: testGetComputationTime took 0.02 sec
+ [junit] Testcase: testGetQuery took 0 sec
+ [junit] Testcase: testGetScore took 0.002 sec
+ [junit] Testcase: testGetScoreMatrix took 0.001 sec
+ [junit] Testcase: testGetPair took 0.006 sec
[junit] Testcase: testSmithWaterman took 0.001 sec
[junit] Testcase: testGetProfile took 0.002 sec
- [junit] Testcase: testGetMinScore took 0 sec
+ [junit] Testcase: testGetMinScore took 0.001 sec
[junit] Testcase: testIsStoringScoreMatrix took 0 sec
- [junit] Testcase: testGetScoreMatrixAsString took 0.052 sec
+ [junit] Testcase: testGetScoreMatrixAsString took 0.031 sec
[junit] Testcase: testSetStoringScoreMatrix took 0 sec
- [junit] Testcase: testGetTarget took 0 sec
- [junit] Testcase: testGetMaxScore took 0.001 sec
+ [junit] Testcase: testGetTarget took 0.001 sec
+ [junit] Testcase: testGetMaxScore took 0 sec
[junit] Running org.biojava.nbio.alignment.routines.AlignerHelperTest
[junit] Testsuite: org.biojava.nbio.alignment.routines.AlignerHelperTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.049 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.049 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec
[junit]
- [junit] Testcase: getSubproblems_should_not_allow_repeated_anchors took 0.004 sec
+ [junit] Testcase: getSubproblems_should_not_allow_repeated_anchors took 0.003 sec
[junit] Testcase: getCuts_should_return_spaced_cuts_when_query_interval_larger_than_cut_size took 0.002 sec
[junit] Testcase: getSubproblems_should_return_score_indicies_of_alignment_subproblems took 0 sec
[junit] Testcase: getSubproblems_should_allow_adjacent_anchors took 0.001 sec
[junit] Testcase: getCuts_should_return_all_positions_when_cuts_exceeds_query_size took 0 sec
- [junit] Testcase: getSubproblems_should_allow_zero_anchors took 0 sec
- [junit] Testcase: getCuts_should_not_return_start_position_for_starting_anchor took 0 sec
- [junit] Testcase: getSubproblems_should_allow_start_and_end_anchors took 0.001 sec
- [junit] Testcase: getSubproblems_should_not_allow_unalignable_anchors took 0 sec
+ [junit] Testcase: getSubproblems_should_allow_zero_anchors took 0.001 sec
+ [junit] Testcase: getCuts_should_not_return_start_position_for_starting_anchor took 0.001 sec
+ [junit] Testcase: getSubproblems_should_allow_start_and_end_anchors took 0 sec
+ [junit] Testcase: getSubproblems_should_not_allow_unalignable_anchors took 0.001 sec
[junit] Running org.biojava.nbio.alignment.routines.GuanUberbacherTest
[junit] Testsuite: org.biojava.nbio.alignment.routines.GuanUberbacherTest
- [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.189 sec
- [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.189 sec
+ [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.139 sec
+ [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.139 sec
[junit]
- [junit] Testcase: testGetComputationTime took 0.105 sec
- [junit] Testcase: testGuanUberbacher took 0.002 sec
+ [junit] Testcase: testGetComputationTime took 0.074 sec
+ [junit] Testcase: testGuanUberbacher took 0.001 sec
[junit] Testcase: testGetScore took 0.001 sec
- [junit] Testcase: testGetPair took 0.005 sec
+ [junit] Testcase: testGetPair took 0.006 sec
[junit] Testcase: testGetProfile took 0.002 sec
- [junit] Testcase: testGetMinScore took 0 sec
- [junit] Testcase: should_align_shorter_target took 0.031 sec
+ [junit] Testcase: testGetMinScore took 0.001 sec
+ [junit] Testcase: should_align_shorter_target took 0.02 sec
[junit] Testcase: should_align_multiple_cuts took 0.001 sec
[junit] Testcase: testGetMaxScore took 0 sec
[junit] Testcase: should_align_shorter_query took 0 sec
BUILD SUCCESSFUL
-Total time: 17 seconds
+Total time: 11 seconds
# Investigate test failure
cd biojava-aa-prop && ant test
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/build.xml
@@ -2731,8 +2765,8 @@
[junit] WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
[junit] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[junit] WARNING: All illegal access operations will be denied in a future release
- [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.774 sec
- [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.774 sec
+ [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.552 sec
+ [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.552 sec
[junit] ------------- Standard Output ---------------
[junit] SequenceName,MolecularWeight,ExtinctionCoefficient_True,ExtinctionCoefficient_False,IsoelectricPoint
[junit] SAOV_0114,53660.5723,41370.0,41370.0,4.986
@@ -2740,12 +2774,12 @@
[junit] SAA6008_00126,95002.026,55240.0,55740.0,5.7263
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testAdvancedXMLExample took 0.652 sec
- [junit] Testcase: testExample1 took 0.032 sec
- [junit] Testcase: testExample2 took 0.009 sec
+ [junit] Testcase: testAdvancedXMLExample took 0.462 sec
+ [junit] Testcase: testExample1 took 0.025 sec
+ [junit] Testcase: testExample2 took 0.006 sec
[junit] Testcase: testExample3 took 0.007 sec
- [junit] Testcase: testExample1WithCSV took 0.026 sec
- [junit] Testcase: testWithCases took 0.011 sec
+ [junit] Testcase: testExample1WithCSV took 0.02 sec
+ [junit] Testcase: testWithCases took 0.005 sec
[junit] Running org.biojava.nbio.aaproperties.CookBookTest
[junit] Testsuite: org.biojava.nbio.aaproperties.CookBookTest
[junit] WARNING: An illegal reflective access operation has occurred
@@ -2753,14 +2787,14 @@
[junit] WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
[junit] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[junit] WARNING: All illegal access operations will be denied in a future release
- [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.753 sec
- [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.753 sec
+ [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.489 sec
+ [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.489 sec
[junit]
- [junit] Testcase: shortExample1 took 0.03 sec
- [junit] Testcase: shortExample2 took 0.588 sec
- [junit] Testcase: shortExample3 took 0.074 sec
- [junit] Testcase: shortExample4 took 0.002 sec
- [junit] Testcase: shortExample5 took 0.006 sec
+ [junit] Testcase: shortExample1 took 0.021 sec
+ [junit] Testcase: shortExample2 took 0.38 sec
+ [junit] Testcase: shortExample3 took 0.039 sec
+ [junit] Testcase: shortExample4 took 0.001 sec
+ [junit] Testcase: shortExample5 took 0.004 sec
[junit] Running org.biojava.nbio.aaproperties.GenbankCommandPromptTest
[junit] Testsuite: org.biojava.nbio.aaproperties.GenbankCommandPromptTest
[junit] WARNING: An illegal reflective access operation has occurred
@@ -2768,19 +2802,19 @@
[junit] WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
[junit] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[junit] WARNING: All illegal access operations will be denied in a future release
- [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.871 sec
- [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.871 sec
+ [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.536 sec
+ [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.536 sec
[junit] ------------- Standard Output ---------------
[junit] SequenceName,MolecularWeight,ExtinctionCoefficient_True,ExtinctionCoefficient_False,IsoelectricPoint
[junit] NP_000257 133 aa linear PRI 27-MAR-2008,15043.5262,5960.0,6585.0,9.1715
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testAdvancedXMLExample took 0.75 sec
- [junit] Testcase: testExample1 took 0.028 sec
- [junit] Testcase: testExample2 took 0.016 sec
- [junit] Testcase: testExample3 took 0.013 sec
- [junit] Testcase: testExample1WithCSV took 0.018 sec
- [junit] Testcase: testWithCases took 0.011 sec
+ [junit] Testcase: testAdvancedXMLExample took 0.464 sec
+ [junit] Testcase: testExample1 took 0.016 sec
+ [junit] Testcase: testExample2 took 0.008 sec
+ [junit] Testcase: testExample3 took 0.006 sec
+ [junit] Testcase: testExample1WithCSV took 0.01 sec
+ [junit] Testcase: testWithCases took 0.006 sec
[junit] Running org.biojava.nbio.aaproperties.PeptidePropertiesImplTest
[junit] Testsuite: org.biojava.nbio.aaproperties.PeptidePropertiesImplTest
[junit] WARNING: An illegal reflective access operation has occurred
@@ -2788,8 +2822,8 @@
[junit] WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
[junit] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[junit] WARNING: All illegal access operations will be denied in a future release
- [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.069 sec
- [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.069 sec
+ [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.821 sec
+ [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.821 sec
[junit] ------------- Standard Error -----------------
[junit] [main] WARN org.biojava.nbio.aaproperties.Utils - '1 are being replaced with '-'
[junit] [main] WARN org.biojava.nbio.aaproperties.Utils - There exists invalid characters in the sequence. Computed results might not be precise.
@@ -3004,39 +3038,39 @@
[junit] [main] WARN org.biojava.nbio.aaproperties.PeptidePropertiesImpl - Valid length of sequence is 0, can't divide by 0 to calculate instability index: setting instability index value to 0.0
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: testAbsorbance took 0.034 sec
- [junit] Testcase: testMolecularWeightXMLSingleFile took 0.65 sec
- [junit] Testcase: testEnrichment took 0.02 sec
- [junit] Testcase: testApliphaticIndex took 0.002 sec
+ [junit] Testcase: testAbsorbance took 0.028 sec
+ [junit] Testcase: testMolecularWeightXMLSingleFile took 0.498 sec
+ [junit] Testcase: testEnrichment took 0.016 sec
+ [junit] Testcase: testApliphaticIndex took 0.001 sec
[junit] Testcase: testMolecularWeightXMLNull took 0.01 sec
[junit] Testcase: testApliphaticIndexNull took 0 sec
[junit] Testcase: testIsoelectricPointExpasy took 0.003 sec
[junit] Testcase: testAbsorbanceNull took 0 sec
- [junit] Testcase: testIsoelectricPointNull took 0.001 sec
- [junit] Testcase: testAverageHydropathy took 0.001 sec
+ [junit] Testcase: testIsoelectricPointNull took 0 sec
+ [junit] Testcase: testAverageHydropathy took 0 sec
[junit] Testcase: testExtinctionCoefficient took 0.002 sec
- [junit] Testcase: testAAComposition took 0.002 sec
- [junit] Testcase: testMolecularWeightBasedOnAminoAcidCompositionTable took 0.055 sec
- [junit] Testcase: testMolecularWeight took 0.002 sec
+ [junit] Testcase: testAAComposition took 0 sec
+ [junit] Testcase: testMolecularWeightBasedOnAminoAcidCompositionTable took 0.035 sec
+ [junit] Testcase: testMolecularWeight took 0.001 sec
[junit] Testcase: testIsoelectricPointInnovagen took 0.003 sec
[junit] Testcase: testNetChargeNull took 0 sec
[junit] Testcase: testExtinctionCoefficientNull took 0 sec
- [junit] Testcase: testNetCharge took 0.145 sec
+ [junit] Testcase: testNetCharge took 0.105 sec
[junit] Testcase: testEnrichmentNull took 0 sec
[junit] Testcase: testInstabilityIndexNull took 0 sec
[junit] Testcase: testAverageHydropathyNull took 0 sec
- [junit] Testcase: testMolecularWeightXML took 0.074 sec
- [junit] Testcase: testInstabilityIndex took 0.001 sec
+ [junit] Testcase: testMolecularWeightXML took 0.057 sec
+ [junit] Testcase: testInstabilityIndex took 0 sec
[junit] Running org.biojava.nbio.aaproperties.ProfeatPropertiesImplTest
[junit] Testsuite: org.biojava.nbio.aaproperties.ProfeatPropertiesImplTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec
[junit]
- [junit] Testcase: testFake took 0.002 sec
+ [junit] Testcase: testFake took 0.001 sec
[junit] Running org.biojava.nbio.aaproperties.profeat.CookBookTest
[junit] Testsuite: org.biojava.nbio.aaproperties.profeat.CookBookTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.059 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.059 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 sec
[junit]
[junit] Testcase: testFakeTest took 0.001 sec
[junit] Running org.biojava.nbio.aaproperties.xml.AminoAcidTest
@@ -3046,20 +3080,20 @@
[junit] WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
[junit] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[junit] WARNING: All illegal access operations will be denied in a future release
- [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.917 sec
- [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.917 sec
+ [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.681 sec
+ [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.681 sec
[junit] ------------- Standard Error -----------------
[junit] [main] WARN org.biojava.nbio.aaproperties.Utils - 'J are being replaced with '-'
[junit] [main] WARN org.biojava.nbio.aaproperties.Utils - There exists invalid characters in the sequence. Computed results might not be precise.
[junit] [main] WARN org.biojava.nbio.aaproperties.Utils - To remove this warning: Please use org.biojava.nbio.aaproperties.Utils.cleanSequence to clean sequence.
[junit] ------------- ---------------- ---------------
[junit]
- [junit] Testcase: generateSchema took 0.45 sec
- [junit] Testcase: readWithIDXml took 0.201 sec
- [junit] Testcase: readMinXml took 0.079 sec
- [junit] Testcase: readAdvancedXml took 0.041 sec
- [junit] Testcase: generateXml took 0.039 sec
- [junit] Testcase: readXml took 0.075 sec
+ [junit] Testcase: generateSchema took 0.321 sec
+ [junit] Testcase: readWithIDXml took 0.144 sec
+ [junit] Testcase: readMinXml took 0.069 sec
+ [junit] Testcase: readAdvancedXml took 0.032 sec
+ [junit] Testcase: generateXml took 0.029 sec
+ [junit] Testcase: readXml took 0.058 sec
[junit] Running org.biojava.nbio.aaproperties.xml.ElementTest
[junit] Testsuite: org.biojava.nbio.aaproperties.xml.ElementTest
[junit] WARNING: An illegal reflective access operation has occurred
@@ -3067,21 +3101,21 @@
[junit] WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
[junit] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[junit] WARNING: All illegal access operations will be denied in a future release
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.821 sec
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.821 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.668 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.668 sec
[junit]
- [junit] Testcase: generateSchema took 0.47 sec
- [junit] Testcase: generateXml took 0.086 sec
- [junit] Testcase: readXml took 0.213 sec
+ [junit] Testcase: generateSchema took 0.384 sec
+ [junit] Testcase: generateXml took 0.074 sec
+ [junit] Testcase: readXml took 0.161 sec
[junit] Running org.biojava.nbio.aaproperties.xml.GenerateJavaCodesFromTextTest
[junit] Testsuite: org.biojava.nbio.aaproperties.xml.GenerateJavaCodesFromTextTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 sec
[junit]
[junit] Testcase: testFake took 0.001 sec
BUILD SUCCESSFUL
-Total time: 15 seconds
+Total time: 11 seconds
# Skip, missing dependency junitx
#cd biojava-genome && ant test
cd biojava-phylo && ant test
@@ -3098,7 +3132,7 @@
[echo] Using java version 11.0.9.1
BUILD SUCCESSFUL
-Total time: 3 seconds
+Total time: 2 seconds
# Native errors may cause issue on NFS...; skipping
cd biojava-sequencing && ant test
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-sequencing/build.xml
@@ -3114,24 +3148,24 @@
[echo] Using java version 11.0.9.1
[junit] Running org.biojava.nbio.sequencing.io.fastq.ConvertTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.ConvertTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.142 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.142 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec
[junit]
- [junit] Testcase: testConvert took 0.127 sec
+ [junit] Testcase: testConvert took 0.091 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.FastqBuilderTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.FastqBuilderTest
- [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec
- [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec
+ [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
+ [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
[junit]
[junit] Testcase: testBuildAppendSequence took 0.004 sec
- [junit] Testcase: testBuildNullDescription took 0.001 sec
+ [junit] Testcase: testBuildNullDescription took 0 sec
[junit] Testcase: testBuildAppendQuality took 0 sec
[junit] Testcase: testBuild took 0.001 sec
- [junit] Testcase: testBuildNonMatchingSequenceQualityScoreLengthsQualityNull took 0 sec
+ [junit] Testcase: testBuildNonMatchingSequenceQualityScoreLengthsQualityNull took 0.001 sec
[junit] Testcase: testBuildDefaultVariant took 0 sec
[junit] Testcase: testBuildMissingQuality took 0 sec
[junit] Testcase: testBuildNonMatchingSequenceQualityScoreLengthsBothNull took 0 sec
- [junit] Testcase: testBuildNullAppendQuality took 0 sec
+ [junit] Testcase: testBuildNullAppendQuality took 0.001 sec
[junit] Testcase: testBuildNonMatchingSequenceQualityScoreLengths0 took 0 sec
[junit] Testcase: testBuildNonMatchingSequenceQualityScoreLengths1 took 0 sec
[junit] Testcase: testBuildNullAppendSequence took 0 sec
@@ -3140,75 +3174,75 @@
[junit] Testcase: testBuildMissingDescription took 0 sec
[junit] Testcase: testBuildNullVariant took 0 sec
[junit] Testcase: testBuildDefault took 0 sec
- [junit] Testcase: testBuildMissingSequence took 0.001 sec
- [junit] Testcase: testBuildNullQuality took 0 sec
- [junit] Testcase: testBuildMultiple took 0.001 sec
+ [junit] Testcase: testBuildMissingSequence took 0 sec
+ [junit] Testcase: testBuildNullQuality took 0.001 sec
+ [junit] Testcase: testBuildMultiple took 0 sec
[junit] Testcase: testConstructor took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.FastqTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.FastqTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
[junit]
- [junit] Testcase: testImmutable took 0.001 sec
- [junit] Testcase: testBuilder took 0.002 sec
+ [junit] Testcase: testImmutable took 0.002 sec
+ [junit] Testcase: testBuilder took 0.001 sec
[junit] Testcase: testVariant took 0 sec
- [junit] Testcase: testQuality took 0.003 sec
+ [junit] Testcase: testQuality took 0.004 sec
[junit] Testcase: testHashCode took 0 sec
[junit] Testcase: testEquals took 0 sec
- [junit] Testcase: testDescription took 0 sec
- [junit] Testcase: testConstructor took 0.001 sec
+ [junit] Testcase: testDescription took 0.001 sec
+ [junit] Testcase: testConstructor took 0 sec
[junit] Testcase: testSequence took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.FastqToolsTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.FastqToolsTest
- [junit] Tests run: 40, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.102 sec
- [junit] Tests run: 40, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.102 sec
+ [junit] Tests run: 40, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 sec
+ [junit] Tests run: 40, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 sec
[junit]
- [junit] Testcase: testErrorProbabilitiesNullFastq took 0.002 sec
+ [junit] Testcase: testErrorProbabilitiesNullFastq took 0.001 sec
[junit] Testcase: testErrorProbabilitiesDoubleArray took 0.001 sec
[junit] Testcase: testConvertNullVariant took 0 sec
[junit] Testcase: testCreateErrorProbabilitiesNullFastq took 0.001 sec
- [junit] Testcase: testCreateDNASequenceWithErrorProbabilies took 0.062 sec
- [junit] Testcase: testQualityScoresIntArrayNullFastq took 0.001 sec
+ [junit] Testcase: testCreateDNASequenceWithErrorProbabilies took 0.045 sec
+ [junit] Testcase: testQualityScoresIntArrayNullFastq took 0 sec
[junit] Testcase: testQualityScoresQualityScoresTooLarge took 0 sec
[junit] Testcase: testQualityScoresQualityScoresTooSmall took 0 sec
[junit] Testcase: testQualityScoresNullIntArray took 0 sec
- [junit] Testcase: testConvertNullFastq took 0 sec
+ [junit] Testcase: testConvertNullFastq took 0.001 sec
[junit] Testcase: testConvertQualitiesSameVariant took 0 sec
[junit] Testcase: testCreateQualityScores took 0.001 sec
[junit] Testcase: testCreateErrorProbabilities took 0 sec
[junit] Testcase: testCreateDNASequenceNullFastq took 0 sec
[junit] Testcase: testConvertQualitiesNullFastq took 0 sec
[junit] Testcase: testConvertQualitiesIlluminaToSanger took 0 sec
- [junit] Testcase: testConvertQualitiesIlluminaToSolexa took 0.001 sec
+ [junit] Testcase: testConvertQualitiesIlluminaToSolexa took 0 sec
[junit] Testcase: testConvertQualitiesSangerToSolexa took 0 sec
[junit] Testcase: testConvertQualitiesSolexaToIllumina took 0 sec
[junit] Testcase: testConvertQualitiesSangerToIllumina took 0 sec
[junit] Testcase: testCreateQualityScoresNullFastq took 0 sec
- [junit] Testcase: testQualityScoresNullFastq took 0 sec
+ [junit] Testcase: testQualityScoresNullFastq took 0.001 sec
[junit] Testcase: testConvertQualitiesSolexaToSanger took 0 sec
- [junit] Testcase: testCreateDNASequenceWithQualityScoresAndErrorProbabilitiesNullFastq took 0.001 sec
+ [junit] Testcase: testCreateDNASequenceWithQualityScoresAndErrorProbabilitiesNullFastq took 0 sec
[junit] Testcase: testErrorProbabilitiesNullErrorProbabilities took 0 sec
[junit] Testcase: testToListNotAList took 0.001 sec
[junit] Testcase: testConvertQualitiesNullVariant took 0.001 sec
[junit] Testcase: testConvertSameVariant took 0 sec
- [junit] Testcase: testQualityScores took 0.005 sec
- [junit] Testcase: testErrorProbabilitiesErrorProbabilitiesTooLarge took 0 sec
+ [junit] Testcase: testQualityScores took 0.004 sec
+ [junit] Testcase: testErrorProbabilitiesErrorProbabilitiesTooLarge took 0.001 sec
[junit] Testcase: testErrorProbabilitiesErrorProbabilitiesTooSmall took 0 sec
[junit] Testcase: testErrorProbabilitiesDoubleArrayNullFastq took 0 sec
[junit] Testcase: testCreateDNASequence took 0 sec
- [junit] Testcase: testCreateDNASequenceWithQualityScoresAndErrorProbabilities took 0 sec
+ [junit] Testcase: testCreateDNASequenceWithQualityScoresAndErrorProbabilities took 0.001 sec
[junit] Testcase: testCreateDNASequenceWithQualityScores took 0 sec
[junit] Testcase: testQualityScoresIntArray took 0 sec
[junit] Testcase: testCreateDNASequenceWithErrorProbabilitiesNullFastq took 0 sec
- [junit] Testcase: testToList took 0.001 sec
+ [junit] Testcase: testToList took 0 sec
[junit] Testcase: testCreateDNASequenceWithQualityScoresNullFastq took 0 sec
[junit] Testcase: testErrorProbabilities took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.FastqVariantTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.FastqVariantTest
- [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 sec
- [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 sec
+ [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
+ [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
[junit]
- [junit] Testcase: testParseFastqVariant took 0.003 sec
+ [junit] Testcase: testParseFastqVariant took 0.002 sec
[junit] Testcase: testQualityQualityScoreRoundTrip took 0.001 sec
[junit] Testcase: testQualityLessThanMinimumQualityScore took 0 sec
[junit] Testcase: testIsSanger took 0.003 sec
@@ -3218,69 +3252,69 @@
[junit] Testcase: testDescription took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.IlluminaFastqReaderTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.IlluminaFastqReaderTest
- [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.193 sec
- [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.193 sec
+ [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 sec
+ [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 sec
[junit]
- [junit] Testcase: testFullRangeAsIllumina took 0.058 sec
- [junit] Testcase: testWrappingAsIllumina took 0.005 sec
- [junit] Testcase: testValidateDescription took 0.011 sec
- [junit] Testcase: testValidateRepeatDescription took 0.004 sec
- [junit] Testcase: testMiscDnaAsIllumina took 0.003 sec
- [junit] Testcase: testMiscRnaAsIllumina took 0.003 sec
- [junit] Testcase: testLongReadsAsIllumina took 0.005 sec
+ [junit] Testcase: testFullRangeAsIllumina took 0.035 sec
+ [junit] Testcase: testWrappingAsIllumina took 0.004 sec
+ [junit] Testcase: testValidateDescription took 0.008 sec
+ [junit] Testcase: testValidateRepeatDescription took 0.003 sec
+ [junit] Testcase: testMiscDnaAsIllumina took 0.002 sec
+ [junit] Testcase: testMiscRnaAsIllumina took 0.002 sec
+ [junit] Testcase: testLongReadsAsIllumina took 0.004 sec
[junit] Testcase: testParseNullReadable took 0.001 sec
- [junit] Testcase: testReadRoundTripSingleFile took 0.024 sec
- [junit] Testcase: testReadEmptyFile took 0 sec
- [junit] Testcase: testErrorExamples took 0.035 sec
- [junit] Testcase: testParse took 0.001 sec
- [junit] Testcase: testCreateFastq took 0.001 sec
+ [junit] Testcase: testReadRoundTripSingleFile took 0.017 sec
+ [junit] Testcase: testReadEmptyFile took 0.001 sec
+ [junit] Testcase: testErrorExamples took 0.018 sec
+ [junit] Testcase: testParse took 0 sec
+ [junit] Testcase: testCreateFastq took 0 sec
[junit] Testcase: testReadInputStream took 0 sec
- [junit] Testcase: testWrappedSequence took 0.002 sec
+ [junit] Testcase: testWrappedSequence took 0.001 sec
[junit] Testcase: testReadEmptyInputStream took 0.001 sec
[junit] Testcase: testParseNullParseListener took 0 sec
[junit] Testcase: testReadFile took 0 sec
[junit] Testcase: testMultipleWrappedQuality took 0.001 sec
- [junit] Testcase: testCreateFastqReader took 0.001 sec
+ [junit] Testcase: testCreateFastqReader took 0 sec
[junit] Testcase: testReadURL took 0 sec
[junit] Testcase: testCreateFastqWriter took 0 sec
- [junit] Testcase: testReadEmptyURL took 0 sec
- [junit] Testcase: testReadRoundTripMultipleFile took 0 sec
- [junit] Testcase: testWrappedQuality took 0.001 sec
+ [junit] Testcase: testReadEmptyURL took 0.001 sec
+ [junit] Testcase: testReadRoundTripMultipleFile took 0.001 sec
+ [junit] Testcase: testWrappedQuality took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.IlluminaFastqWriterTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.IlluminaFastqWriterTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec
[junit]
- [junit] Testcase: testConvertNotIlluminaVariant took 0.009 sec
- [junit] Testcase: testAppendVararg took 0 sec
+ [junit] Testcase: testConvertNotIlluminaVariant took 0.006 sec
+ [junit] Testcase: testAppendVararg took 0.001 sec
[junit] Testcase: testCreateFastq took 0 sec
- [junit] Testcase: testWriteOutputStreamVararg took 0.004 sec
- [junit] Testcase: testWriteFileIterable took 0.022 sec
- [junit] Testcase: testWriteOutputStreamIterable took 0.001 sec
+ [junit] Testcase: testWriteOutputStreamVararg took 0.003 sec
+ [junit] Testcase: testWriteFileIterable took 0.012 sec
+ [junit] Testcase: testWriteOutputStreamIterable took 0 sec
[junit] Testcase: testAppendIterable took 0.001 sec
[junit] Testcase: testCreateFastqWriter took 0 sec
- [junit] Testcase: testWriteFileVararg took 0.002 sec
+ [junit] Testcase: testWriteFileVararg took 0.001 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.SangerFastqReaderTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.SangerFastqReaderTest
- [junit] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.165 sec
- [junit] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.165 sec
+ [junit] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.109 sec
+ [junit] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.109 sec
[junit]
- [junit] Testcase: testMiscRnaAsSanger took 0.044 sec
- [junit] Testcase: testFullRangeAsSanger took 0.005 sec
- [junit] Testcase: testWrappingOriginal took 0.004 sec
- [junit] Testcase: testLongReadsOriginal took 0.009 sec
- [junit] Testcase: testMiscDnaOriginal took 0.003 sec
+ [junit] Testcase: testMiscRnaAsSanger took 0.029 sec
+ [junit] Testcase: testFullRangeAsSanger took 0.004 sec
+ [junit] Testcase: testWrappingOriginal took 0.002 sec
+ [junit] Testcase: testLongReadsOriginal took 0.005 sec
+ [junit] Testcase: testMiscDnaOriginal took 0.002 sec
[junit] Testcase: testMiscRnaOriginal took 0.002 sec
- [junit] Testcase: testValidateDescription took 0.008 sec
- [junit] Testcase: testValidateRepeatDescription took 0.003 sec
- [junit] Testcase: testFullRangeOriginal took 0.002 sec
+ [junit] Testcase: testValidateDescription took 0.005 sec
+ [junit] Testcase: testValidateRepeatDescription took 0.001 sec
+ [junit] Testcase: testFullRangeOriginal took 0.001 sec
[junit] Testcase: testWrappingAsSanger took 0.002 sec
- [junit] Testcase: testLongReadsAsSanger took 0.004 sec
+ [junit] Testcase: testLongReadsAsSanger took 0.002 sec
[junit] Testcase: testMiscDnaAsSanger took 0.002 sec
- [junit] Testcase: testParseNullReadable took 0.001 sec
- [junit] Testcase: testReadRoundTripSingleFile took 0.024 sec
+ [junit] Testcase: testParseNullReadable took 0 sec
+ [junit] Testcase: testReadRoundTripSingleFile took 0.016 sec
[junit] Testcase: testReadEmptyFile took 0 sec
- [junit] Testcase: testErrorExamples took 0.023 sec
+ [junit] Testcase: testErrorExamples took 0.016 sec
[junit] Testcase: testParse took 0.001 sec
[junit] Testcase: testCreateFastq took 0 sec
[junit] Testcase: testReadInputStream took 0 sec
@@ -3288,82 +3322,82 @@
[junit] Testcase: testReadEmptyInputStream took 0.001 sec
[junit] Testcase: testParseNullParseListener took 0 sec
[junit] Testcase: testReadFile took 0 sec
- [junit] Testcase: testMultipleWrappedQuality took 0.001 sec
- [junit] Testcase: testCreateFastqReader took 0.001 sec
+ [junit] Testcase: testMultipleWrappedQuality took 0 sec
+ [junit] Testcase: testCreateFastqReader took 0 sec
[junit] Testcase: testReadURL took 0 sec
- [junit] Testcase: testCreateFastqWriter took 0.001 sec
- [junit] Testcase: testReadEmptyURL took 0 sec
+ [junit] Testcase: testCreateFastqWriter took 0 sec
+ [junit] Testcase: testReadEmptyURL took 0.001 sec
[junit] Testcase: testReadRoundTripMultipleFile took 0 sec
- [junit] Testcase: testWrappedQuality took 0.001 sec
+ [junit] Testcase: testWrappedQuality took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.SangerFastqWriterTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.SangerFastqWriterTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.059 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.059 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 sec
[junit]
- [junit] Testcase: testConvertNotSangerVariant took 0.009 sec
- [junit] Testcase: testAppendVararg took 0 sec
- [junit] Testcase: testCreateFastq took 0.001 sec
- [junit] Testcase: testWriteOutputStreamVararg took 0.005 sec
- [junit] Testcase: testWriteFileIterable took 0.021 sec
+ [junit] Testcase: testConvertNotSangerVariant took 0.007 sec
+ [junit] Testcase: testAppendVararg took 0.001 sec
+ [junit] Testcase: testCreateFastq took 0 sec
+ [junit] Testcase: testWriteOutputStreamVararg took 0.003 sec
+ [junit] Testcase: testWriteFileIterable took 0.013 sec
[junit] Testcase: testWriteOutputStreamIterable took 0.001 sec
[junit] Testcase: testAppendIterable took 0 sec
[junit] Testcase: testCreateFastqWriter took 0 sec
[junit] Testcase: testWriteFileVararg took 0.002 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.SolexaFastqReaderTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.SolexaFastqReaderTest
- [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.15 sec
- [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.15 sec
+ [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.11 sec
+ [junit] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.11 sec
[junit]
- [junit] Testcase: testMiscRnaAsSolexa took 0.04 sec
- [junit] Testcase: testFullRangeAsSolexa took 0.004 sec
- [junit] Testcase: testValidateDescription took 0.01 sec
+ [junit] Testcase: testMiscRnaAsSolexa took 0.03 sec
+ [junit] Testcase: testFullRangeAsSolexa took 0.003 sec
+ [junit] Testcase: testValidateDescription took 0.007 sec
[junit] Testcase: testValidateRepeatDescription took 0.003 sec
- [junit] Testcase: testWrappingAsSolexa took 0.003 sec
- [junit] Testcase: testLongReadsAsSolexa took 0.005 sec
- [junit] Testcase: testMiscDnaAsSolexa took 0.003 sec
- [junit] Testcase: testParseNullReadable took 0.001 sec
- [junit] Testcase: testReadRoundTripSingleFile took 0.023 sec
+ [junit] Testcase: testWrappingAsSolexa took 0.002 sec
+ [junit] Testcase: testLongReadsAsSolexa took 0.004 sec
+ [junit] Testcase: testMiscDnaAsSolexa took 0.002 sec
+ [junit] Testcase: testParseNullReadable took 0 sec
+ [junit] Testcase: testReadRoundTripSingleFile took 0.016 sec
[junit] Testcase: testReadEmptyFile took 0 sec
- [junit] Testcase: testErrorExamples took 0.028 sec
- [junit] Testcase: testParse took 0.001 sec
+ [junit] Testcase: testErrorExamples took 0.02 sec
+ [junit] Testcase: testParse took 0 sec
[junit] Testcase: testCreateFastq took 0 sec
- [junit] Testcase: testReadInputStream took 0.001 sec
+ [junit] Testcase: testReadInputStream took 0 sec
[junit] Testcase: testWrappedSequence took 0.001 sec
[junit] Testcase: testReadEmptyInputStream took 0.001 sec
[junit] Testcase: testParseNullParseListener took 0 sec
- [junit] Testcase: testReadFile took 0 sec
+ [junit] Testcase: testReadFile took 0.001 sec
[junit] Testcase: testMultipleWrappedQuality took 0.001 sec
[junit] Testcase: testCreateFastqReader took 0 sec
- [junit] Testcase: testReadURL took 0 sec
- [junit] Testcase: testCreateFastqWriter took 0.001 sec
+ [junit] Testcase: testReadURL took 0.001 sec
+ [junit] Testcase: testCreateFastqWriter took 0 sec
[junit] Testcase: testReadEmptyURL took 0 sec
[junit] Testcase: testReadRoundTripMultipleFile took 0 sec
- [junit] Testcase: testWrappedQuality took 0.001 sec
+ [junit] Testcase: testWrappedQuality took 0 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.SolexaFastqWriterTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.SolexaFastqWriterTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec
[junit]
- [junit] Testcase: testConvertNotSolexaVariant took 0.007 sec
+ [junit] Testcase: testConvertNotSolexaVariant took 0.006 sec
[junit] Testcase: testAppendVararg took 0.001 sec
[junit] Testcase: testCreateFastq took 0 sec
- [junit] Testcase: testWriteOutputStreamVararg took 0.004 sec
- [junit] Testcase: testWriteFileIterable took 0.017 sec
- [junit] Testcase: testWriteOutputStreamIterable took 0 sec
+ [junit] Testcase: testWriteOutputStreamVararg took 0.003 sec
+ [junit] Testcase: testWriteFileIterable took 0.012 sec
+ [junit] Testcase: testWriteOutputStreamIterable took 0.001 sec
[junit] Testcase: testAppendIterable took 0 sec
[junit] Testcase: testCreateFastqWriter took 0 sec
[junit] Testcase: testWriteFileVararg took 0.001 sec
[junit] Running org.biojava.nbio.sequencing.io.fastq.StreamingFastqParserTest
[junit] Testsuite: org.biojava.nbio.sequencing.io.fastq.StreamingFastqParserTest
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
- [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
+ [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
[junit]
- [junit] Testcase: testStreamNullVariant took 0.002 sec
- [junit] Testcase: testStreamNullListener took 0.003 sec
+ [junit] Testcase: testStreamNullVariant took 0.001 sec
+ [junit] Testcase: testStreamNullListener took 0.002 sec
[junit] Testcase: testStreamNullReadable took 0.001 sec
BUILD SUCCESSFUL
-Total time: 11 seconds
+Total time: 8 seconds
# Serialization failure in pbuilder mode
#cd biojava-modfinder && ant test
# Investigate test failure
@@ -3384,8 +3418,8 @@
[echo] Using java version 11.0.9.1
[junit] Running org.biojava.nbio.structure.gui.JmolViewerImplTest
[junit] Testsuite: org.biojava.nbio.structure.gui.JmolViewerImplTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec
[junit]
[junit] Testcase: testMe took 0.001 sec
[junit] Running org.biojava.nbio.structure.gui.RenderStyleTest
@@ -3396,10 +3430,10 @@
[junit] Testcase: testSomeMethod took 0.001 sec
[junit] Running org.biojava.nbio.structure.gui.StructureViewerTest
[junit] Testsuite: org.biojava.nbio.structure.gui.StructureViewerTest
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
- [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec
+ [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec
[junit]
- [junit] Testcase: testGetColor took 0.004 sec
+ [junit] Testcase: testGetColor took 0.003 sec
[junit] Testcase: testSetStructure took 0 sec
[junit] Testcase: testClear took 0 sec
[junit] Testcase: testGetSelection took 0.002 sec
@@ -3410,13 +3444,13 @@
[junit] Testcase: testSetStyle took 0 sec
[junit] Running org.biojava.nbio.structure.gui.ViewerTest
[junit] Testsuite: org.biojava.nbio.structure.gui.ViewerTest
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
- [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec
+ [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec
[junit]
[junit] Testcase: testStructureLoad took 0.001 sec
BUILD SUCCESSFUL
-Total time: 5 seconds
+Total time: 4 seconds
cd biojava-ontology && ant test
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-ontology/build.xml
@@ -3431,7 +3465,7 @@
[echo] Using java version 11.0.9.1
BUILD SUCCESSFUL
-Total time: 2 seconds
+Total time: 1 second
make[1]: Leaving directory '/build/biojava4-live-4.2.12+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
@@ -3479,21 +3513,23 @@
dh_gencontrol
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'libbiojava4-java' in '../libbiojava4-java_4.2.12+dfsg-2_all.deb'.
dpkg-deb: building package 'libbiojava4.0-java' in '../libbiojava4.0-java_4.2.12+dfsg-2_all.deb'.
dpkg-deb: building package 'libbiojava4-java-doc' in '../libbiojava4-java-doc_4.2.12+dfsg-2_all.deb'.
+dpkg-deb: building package 'libbiojava4-java' in '../libbiojava4-java_4.2.12+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../biojava4-live_4.2.12+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/39423/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/39423/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/48295 and its subdirectories
-I: Current time: Tue Apr 6 19:30:04 -12 2021
-I: pbuilder-time-stamp: 1617780604
+I: removing directory /srv/workspace/pbuilder/39423 and its subdirectories
+I: Current time: Wed May 11 03:57:21 +14 2022
+I: pbuilder-time-stamp: 1652191041